Wall clock time and date at job start Tue Mar 31 2020 03:14:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09001 * 115.55292 * 2 1 4 4 C 1.53006 * 117.49597 * 214.33538 * 2 1 3 5 5 C 1.52997 * 117.50138 * 145.71434 * 2 1 3 6 6 H 1.09002 * 117.49884 * 214.98139 * 5 2 1 7 7 C 1.53006 * 117.49537 * 359.97438 * 5 2 1 8 8 N 1.46503 * 109.46921 * 185.01720 * 7 5 2 9 9 C 1.34775 * 119.99892 * 180.02562 * 8 7 5 10 10 O 1.21352 * 120.00116 * 0.02562 * 9 8 7 11 11 C 1.49454 * 119.99996 * 179.97438 * 9 8 7 12 12 O 1.21343 * 120.00052 * 0.02562 * 11 9 8 13 13 N 1.34775 * 119.99996 * 179.97438 * 11 9 8 14 14 C 1.47027 * 125.64696 * 0.02562 * 13 11 9 15 15 C 1.54330 * 107.27062 * 181.02254 * 14 13 11 16 16 C 1.55159 * 102.94054 * 22.19316 * 15 14 13 17 17 O 1.42904 * 110.99838 * 82.60974 * 16 15 14 18 18 C 1.50695 * 111.00491 * 206.42129 * 16 15 14 19 19 H 1.08000 * 119.99941 * 0.02562 * 18 16 15 20 20 C 1.37877 * 119.99989 * 180.02562 * 18 16 15 21 21 N 1.31516 * 120.00042 * 359.97438 * 20 18 16 22 22 Si 1.86800 * 119.99841 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.47133 * 59.99971 * 22 20 18 24 24 H 1.48503 * 109.47108 * 179.97438 * 22 20 18 25 25 H 1.48494 * 109.46973 * 299.99687 * 22 20 18 26 26 C 1.47425 * 125.65133 * 179.71864 * 13 11 9 27 27 H 1.09004 * 109.47489 * 154.27815 * 1 2 3 28 28 H 1.09006 * 109.47230 * 274.27603 * 1 2 3 29 29 H 1.09001 * 109.47457 * 34.27664 * 1 2 3 30 30 H 1.08990 * 117.50086 * 359.97438 * 4 2 1 31 31 H 1.09004 * 117.49623 * 145.02417 * 4 2 1 32 32 H 1.09002 * 109.47541 * 305.01612 * 7 5 2 33 33 H 1.08999 * 109.46972 * 65.01828 * 7 5 2 34 34 H 0.96996 * 120.00063 * 359.97438 * 8 7 5 35 35 H 1.08999 * 109.88622 * 300.43984 * 14 13 11 36 36 H 1.09003 * 109.88027 * 61.60666 * 14 13 11 37 37 H 1.08994 * 110.71868 * 140.55889 * 15 14 13 38 38 H 1.09001 * 110.71773 * 263.83130 * 15 14 13 39 39 H 0.96706 * 113.99689 * 180.02562 * 17 16 15 40 40 H 0.96999 * 119.99935 * 180.02562 * 21 20 18 41 41 H 1.08996 * 110.36394 * 274.74993 * 26 13 11 42 42 H 1.09006 * 110.36251 * 37.06981 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2363 -1.1207 -0.7655 5 6 2.2364 -1.1213 0.7645 6 1 3.1715 -0.8756 1.2679 7 6 1.3587 -2.1565 1.4710 8 7 2.2058 -3.0711 2.2406 9 6 1.6467 -4.0720 2.9491 10 8 0.4418 -4.2160 2.9491 11 6 2.5108 -5.0054 3.7338 12 8 3.7157 -4.8617 3.7334 13 7 1.9517 -6.0061 4.4427 14 6 0.5125 -6.2931 4.5314 15 6 0.3443 -7.5067 5.4699 16 6 1.6517 -7.4838 6.3052 17 8 1.5488 -6.5620 7.3923 18 6 1.9998 -8.8634 6.8017 19 1 1.3634 -9.7014 6.5582 20 6 3.1305 -9.0558 7.5667 21 7 3.9057 -8.0354 7.8627 22 14 3.5623 -10.7661 8.1816 23 1 3.7541 -11.6748 7.0229 24 1 4.8161 -10.7050 8.9750 25 1 2.4603 -11.2780 9.0351 26 6 2.6824 -6.9980 5.2525 27 1 -0.3634 -0.9258 -0.4460 28 1 -0.3634 0.0766 1.0249 29 1 -0.3634 0.8492 -0.5788 30 1 1.6111 -1.8582 -1.2687 31 1 3.1715 -0.8747 -1.2687 32 1 0.6676 -1.6485 2.1436 33 1 0.7945 -2.7214 0.7290 34 1 3.1690 -2.9567 2.2397 35 1 -0.0129 -5.4311 4.9424 36 1 0.1205 -6.5320 3.5427 37 1 -0.5264 -7.3791 6.1129 38 1 0.2694 -8.4304 4.8961 39 1 2.3424 -6.5128 7.9427 40 1 4.7014 -8.1709 8.4007 41 1 3.0112 -7.8289 4.6284 42 1 3.5356 -6.5313 5.7448 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326071570.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:14:24 Heat of formation + Delta-G solvation = -115.916622 kcal Electronic energy + Delta-G solvation = -24129.068328 eV Core-core repulsion = 20495.003883 eV Total energy + Delta-G solvation = -3634.064445 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 296.157 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.82823 -40.16956 -39.07228 -38.80974 -36.34170 -35.31943 -34.16495 -31.96700 -29.86848 -29.64315 -28.62380 -27.31882 -25.12793 -23.26157 -22.50060 -21.57306 -21.32892 -20.28905 -19.20127 -18.62806 -18.07826 -17.32971 -17.21870 -17.05365 -16.32667 -16.22169 -15.89760 -15.37341 -14.87427 -14.82016 -14.69250 -14.62540 -14.20492 -13.96806 -13.82372 -13.49502 -13.36131 -13.10247 -12.82878 -12.72357 -12.54069 -12.44345 -12.32123 -12.25771 -12.15769 -12.12177 -11.25512 -11.06327 -10.95622 -10.69445 -10.56376 -10.35966 -10.24352 -9.64504 -8.26478 -6.43276 0.32092 1.24838 1.45764 1.46572 1.54433 2.09930 2.36859 2.47641 2.82004 2.99425 3.31340 3.59877 3.77350 3.88744 3.90941 4.07972 4.14439 4.21998 4.31917 4.44135 4.54939 4.64735 4.65291 4.72263 4.90340 4.93751 4.94442 4.97418 5.05352 5.06537 5.13887 5.23054 5.27880 5.33580 5.42423 5.43742 5.74785 5.95886 6.04032 6.35647 6.60069 6.66422 6.90276 7.29022 7.38515 8.79434 Molecular weight = 296.16amu Principal moments of inertia in cm(-1) A = 0.038600 B = 0.002988 C = 0.002882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.205598 B = 9367.712153 C = 9711.528903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.135 4.135 3 H 0.119 0.881 4 C -0.169 4.169 5 C -0.179 4.179 6 H 0.118 0.882 7 C 0.152 3.848 8 N -0.687 5.687 9 C 0.516 3.484 10 O -0.531 6.531 11 C 0.501 3.499 12 O -0.562 6.562 13 N -0.581 5.581 14 C 0.119 3.881 15 C -0.116 4.116 16 C 0.233 3.767 17 O -0.590 6.590 18 C -0.556 4.556 19 H 0.072 0.928 20 C 0.026 3.974 21 N -0.918 5.918 22 Si 0.968 3.032 23 H -0.269 1.269 24 H -0.285 1.285 25 H -0.270 1.270 26 C 0.102 3.898 27 H 0.056 0.944 28 H 0.059 0.941 29 H 0.073 0.927 30 H 0.097 0.903 31 H 0.107 0.893 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.418 0.582 35 H 0.068 0.932 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.093 0.907 39 H 0.378 0.622 40 H 0.272 0.728 41 H 0.061 0.939 42 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.571 12.624 -14.960 20.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.153 4.153 3 H 0.137 0.863 4 C -0.206 4.206 5 C -0.198 4.198 6 H 0.136 0.864 7 C 0.030 3.970 8 N -0.340 5.340 9 C 0.296 3.704 10 O -0.408 6.408 11 C 0.285 3.715 12 O -0.442 6.442 13 N -0.313 5.313 14 C -0.003 4.003 15 C -0.153 4.153 16 C 0.193 3.807 17 O -0.400 6.400 18 C -0.594 4.594 19 H 0.090 0.910 20 C -0.174 4.174 21 N -0.557 5.557 22 Si 0.793 3.207 23 H -0.194 1.194 24 H -0.211 1.211 25 H -0.195 1.195 26 C -0.020 4.020 27 H 0.075 0.925 28 H 0.078 0.922 29 H 0.092 0.908 30 H 0.115 0.885 31 H 0.125 0.875 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.255 0.745 35 H 0.087 0.913 36 H 0.104 0.896 37 H 0.103 0.897 38 H 0.112 0.888 39 H 0.229 0.771 40 H 0.082 0.918 41 H 0.079 0.921 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -5.235 12.812 -15.177 20.540 hybrid contribution 1.690 -0.886 0.882 2.102 sum -3.545 11.926 -14.296 18.952 Atomic orbital electron populations 1.21437 0.92453 1.02658 1.02237 1.22479 0.95797 0.94584 1.02473 0.86268 1.23315 1.03285 1.01506 0.92492 1.22487 1.01787 1.00315 0.95166 0.86364 1.21077 0.92336 0.89345 0.94260 1.45745 1.12468 1.28750 1.47070 1.19779 0.87594 0.82339 0.80685 1.90720 1.14565 1.72434 1.63044 1.20239 0.87865 0.82086 0.81342 1.90694 1.15408 1.73138 1.64978 1.48678 1.10387 1.27682 1.44569 1.22168 0.79224 0.98399 1.00477 1.22739 0.98276 0.97503 0.96819 1.19886 0.90372 0.87298 0.83180 1.86082 1.44346 1.65210 1.44322 1.21773 1.09627 0.94142 1.33818 0.90966 1.25841 0.95287 1.01176 0.95130 1.69661 1.15434 1.32212 1.38438 0.85456 0.77403 0.79436 0.78434 1.19432 1.21065 1.19530 1.23165 0.97173 0.88976 0.92696 0.92533 0.92234 0.90798 0.88486 0.87482 0.90852 0.90865 0.74477 0.91322 0.89642 0.89667 0.88803 0.77063 0.91848 0.92113 0.92864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.50 9.19 71.98 0.66 -0.84 16 2 C -0.13 -1.57 6.41 -10.79 -0.07 -1.64 16 3 H 0.12 1.13 8.14 -2.39 -0.02 1.11 16 4 C -0.17 -2.05 9.82 30.60 0.30 -1.75 16 5 C -0.18 -2.59 5.85 -10.79 -0.06 -2.65 16 6 H 0.12 1.60 8.04 -2.39 -0.02 1.58 16 7 C 0.15 2.99 5.04 86.38 0.44 3.42 16 8 N -0.69 -17.42 5.55 -464.39 -2.58 -20.00 16 9 C 0.52 17.26 7.86 87.27 0.69 17.94 16 10 O -0.53 -18.85 14.12 -3.25 -0.05 -18.90 16 11 C 0.50 20.38 7.91 87.27 0.69 21.07 16 12 O -0.56 -25.01 16.73 -3.23 -0.05 -25.06 16 13 N -0.58 -24.93 3.32 -812.90 -2.70 -27.63 16 14 C 0.12 4.53 5.49 86.73 0.48 5.01 16 15 C -0.12 -4.62 6.12 31.79 0.19 -4.42 16 16 C 0.23 11.40 0.89 -10.07 -0.01 11.39 16 17 O -0.59 -31.01 13.19 -148.98 -1.97 -32.98 16 18 C -0.56 -28.58 8.25 25.60 0.21 -28.37 16 19 H 0.07 3.57 7.76 -2.91 -0.02 3.54 16 20 C 0.03 1.35 5.30 84.65 0.45 1.80 16 21 N -0.92 -49.16 10.72 21.45 0.23 -48.93 16 22 Si 0.97 41.08 29.54 68.60 2.03 43.11 16 23 H -0.27 -11.13 7.11 99.48 0.71 -10.43 16 24 H -0.29 -12.01 7.11 99.48 0.71 -11.30 16 25 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 26 C 0.10 4.97 5.65 86.93 0.49 5.46 16 27 H 0.06 0.68 7.90 -2.39 -0.02 0.66 16 28 H 0.06 0.74 7.83 -2.38 -0.02 0.72 16 29 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.10 1.20 7.94 -2.39 -0.02 1.18 16 31 H 0.11 1.08 8.14 -2.38 -0.02 1.06 16 32 H 0.07 1.51 7.77 -2.39 -0.02 1.49 16 33 H 0.07 1.46 7.88 -2.39 -0.02 1.44 16 34 H 0.42 9.78 7.87 -92.71 -0.73 9.05 16 35 H 0.07 2.64 7.58 -2.39 -0.02 2.62 16 36 H 0.09 2.90 7.69 -2.39 -0.02 2.88 16 37 H 0.08 3.24 8.14 -2.39 -0.02 3.22 16 38 H 0.09 3.41 8.01 -2.39 -0.02 3.39 16 39 H 0.38 20.72 6.93 -74.05 -0.51 20.21 16 40 H 0.27 13.96 8.31 -92.71 -0.77 13.19 16 41 H 0.06 2.98 8.03 -2.39 -0.02 2.96 16 42 H 0.05 2.92 7.64 -2.38 -0.02 2.90 16 Total: -1.00 -61.50 348.03 -0.84 -62.33 By element: Atomic # 1 Polarization: 41.82 SS G_CDS: -0.20 Total: 41.62 kcal Atomic # 6 Polarization: 21.98 SS G_CDS: 4.45 Total: 26.43 kcal Atomic # 7 Polarization: -91.51 SS G_CDS: -5.05 Total: -96.56 kcal Atomic # 8 Polarization: -74.87 SS G_CDS: -2.07 Total: -76.94 kcal Atomic # 14 Polarization: 41.08 SS G_CDS: 2.03 Total: 43.11 kcal Total: -61.50 -0.84 -62.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326071570.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.582 kcal (2) G-P(sol) polarization free energy of solvation -61.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds