Wall clock time and date at job start Tue Mar 31 2020 03:20:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08995 * 110.53444 * 2 1 4 4 C 1.54096 * 110.48329 * 237.38465 * 2 1 3 5 5 O 1.43745 * 107.29454 * 243.34835 * 4 2 1 6 6 C 1.44377 * 106.97327 * 333.49084 * 5 4 2 7 7 C 1.54809 * 110.48815 * 122.61762 * 2 1 3 8 8 H 1.08995 * 110.93974 * 21.34655 * 7 2 1 9 9 N 1.46497 * 110.90813 * 257.75072 * 7 2 1 10 10 C 1.34773 * 120.00073 * 160.83890 * 9 7 2 11 11 O 1.21347 * 120.00171 * 0.02562 * 10 9 7 12 12 C 1.49449 * 120.00064 * 180.02562 * 10 9 7 13 13 O 1.21351 * 120.00187 * 0.02562 * 12 10 9 14 14 N 1.34779 * 119.99844 * 180.02562 * 12 10 9 15 15 C 1.46509 * 119.99835 * 180.02562 * 14 12 10 16 16 C 1.53000 * 109.46953 * 184.78974 * 15 14 12 17 17 C 1.50694 * 115.54930 * 294.80479 * 16 15 14 18 18 H 1.08006 * 120.00204 * 99.44092 * 17 16 15 19 19 C 1.37879 * 120.00198 * 279.43473 * 17 16 15 20 20 N 1.31519 * 119.99870 * 5.42362 * 19 17 16 21 21 Si 1.86801 * 120.00114 * 185.42195 * 19 17 16 22 22 H 1.48498 * 109.46834 * 269.99882 * 21 19 17 23 23 H 1.48502 * 109.46775 * 150.00405 * 21 19 17 24 24 H 1.48491 * 109.47242 * 30.00307 * 21 19 17 25 25 C 1.53003 * 117.51627 * 80.50756 * 16 15 14 26 26 C 1.53003 * 60.00075 * 107.48004 * 25 16 15 27 27 H 1.09001 * 109.46921 * 297.38059 * 1 2 3 28 28 H 1.08993 * 109.47685 * 57.38278 * 1 2 3 29 29 H 1.09003 * 109.47188 * 177.38572 * 1 2 3 30 30 H 1.09002 * 109.87910 * 123.92824 * 4 2 1 31 31 H 1.08998 * 110.00671 * 2.84966 * 4 2 1 32 32 H 1.09000 * 110.61967 * 281.55777 * 6 5 4 33 33 H 1.09007 * 110.74930 * 158.62313 * 6 5 4 34 34 H 0.97001 * 119.99833 * 340.85003 * 9 7 2 35 35 H 0.96993 * 120.00167 * 0.02562 * 14 12 10 36 36 H 1.08990 * 109.46985 * 64.78623 * 15 14 12 37 37 H 1.08999 * 109.46499 * 304.78508 * 15 14 12 38 38 H 0.97006 * 119.99323 * 354.99497 * 20 19 17 39 39 H 1.09000 * 117.49543 * 214.97120 * 25 16 15 40 40 H 1.09001 * 117.50307 * 359.97438 * 25 16 15 41 41 H 1.08995 * 117.49619 * 252.51220 * 26 25 16 42 42 H 1.08999 * 117.51778 * 107.47838 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9124 1.0207 0.0000 4 6 2.0693 -0.7781 -1.2159 5 8 2.7956 -1.9109 -0.7105 6 6 3.2660 -1.5561 0.6076 7 6 2.0719 -0.7817 1.2215 8 1 1.3201 -1.4694 1.6086 9 7 2.5269 0.1356 2.2692 10 6 2.6678 -0.3043 3.5353 11 8 2.4182 -1.4603 3.8074 12 6 3.1314 0.6315 4.6043 13 8 3.3805 1.7876 4.3325 14 7 3.2727 0.1914 5.8704 15 6 3.7267 1.1090 6.9185 16 6 3.9160 0.3367 8.2256 17 6 2.6608 -0.2415 8.8264 18 1 2.4224 -1.2846 8.6793 19 6 1.8166 0.5611 9.5643 20 7 2.0494 1.8523 9.6549 21 14 0.3423 -0.1856 10.4351 22 1 -0.8328 -0.1620 9.5275 23 1 0.0392 0.6008 11.6578 24 1 0.6484 -1.5888 10.8122 25 6 5.2118 -0.4589 8.3952 26 6 4.9971 0.8317 9.1884 27 1 -0.3633 0.4726 0.9126 28 1 -0.3634 0.5539 -0.8655 29 1 -0.3634 -1.0266 -0.0469 30 1 2.7350 -0.1409 -1.7982 31 1 1.2415 -1.1164 -1.8391 32 1 4.1456 -0.9157 0.5417 33 1 3.4858 -2.4492 1.1926 34 1 2.7266 1.0595 2.0517 35 1 3.0740 -0.7327 6.0876 36 1 2.9822 1.8918 7.0634 37 1 4.6741 1.5590 6.6219 38 1 2.8535 2.2287 9.2641 39 1 5.1564 -1.4005 8.9415 40 1 5.9297 -0.4325 7.5754 41 1 5.5737 1.7074 8.8905 42 1 4.8002 0.7395 10.2565 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001333118473.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:20:25 Heat of formation + Delta-G solvation = -123.065430 kcal Electronic energy + Delta-G solvation = -24031.317458 eV Core-core repulsion = 20396.943017 eV Total energy + Delta-G solvation = -3634.374441 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 296.157 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.93410 -40.71686 -39.55326 -38.73246 -36.26589 -35.09189 -33.99299 -33.77069 -30.21141 -28.68447 -27.25093 -26.99411 -25.34771 -23.32969 -23.00788 -22.00143 -21.63860 -21.17397 -19.67920 -18.50967 -18.30409 -17.37594 -17.22909 -17.00335 -16.52306 -16.13459 -15.86107 -15.77484 -15.61817 -15.02087 -14.95709 -14.70995 -14.60490 -14.29168 -13.65597 -13.61727 -13.50693 -13.20413 -12.92100 -12.86259 -12.66432 -12.42843 -12.23768 -11.94764 -11.94150 -11.86990 -11.54142 -10.88641 -10.84820 -10.61642 -10.50611 -10.35485 -10.30206 -10.13465 -8.54079 -6.30449 0.25855 1.19947 1.55500 1.61769 1.79169 2.05715 2.48351 2.57496 2.97346 3.17703 3.23288 3.29283 3.45270 3.68571 3.78314 3.96413 3.98353 4.14153 4.31174 4.39940 4.41716 4.47821 4.64105 4.65192 4.71295 4.72335 4.82341 4.82980 4.88287 4.95697 5.04591 5.11880 5.19929 5.28386 5.30788 5.44618 5.76320 5.87505 6.12372 6.23603 6.34465 6.65995 6.69397 6.88657 7.51271 8.85807 Molecular weight = 296.16amu Principal moments of inertia in cm(-1) A = 0.021261 B = 0.003368 C = 0.003166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1316.622031 B = 8310.398710 C = 8840.608657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.126 4.126 3 H 0.109 0.891 4 C 0.048 3.952 5 O -0.390 6.390 6 C 0.039 3.961 7 C 0.111 3.889 8 H 0.096 0.904 9 N -0.676 5.676 10 C 0.518 3.482 11 O -0.536 6.536 12 C 0.497 3.503 13 O -0.554 6.554 14 N -0.668 5.668 15 C 0.169 3.831 16 C -0.024 4.024 17 C -0.580 4.580 18 H 0.048 0.952 19 C -0.016 4.016 20 N -0.929 5.929 21 Si 1.108 2.892 22 H -0.281 1.281 23 H -0.286 1.286 24 H -0.272 1.272 25 C -0.166 4.166 26 C -0.172 4.172 27 H 0.052 0.948 28 H 0.083 0.917 29 H 0.060 0.940 30 H 0.079 0.921 31 H 0.104 0.896 32 H 0.075 0.925 33 H 0.091 0.909 34 H 0.422 0.578 35 H 0.415 0.585 36 H 0.039 0.961 37 H 0.059 0.941 38 H 0.267 0.733 39 H 0.084 0.916 40 H 0.094 0.906 41 H 0.086 0.914 42 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.442 -3.227 -20.149 20.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.145 4.145 3 H 0.127 0.873 4 C -0.028 4.028 5 O -0.309 6.309 6 C -0.039 4.039 7 C 0.006 3.994 8 H 0.114 0.886 9 N -0.330 5.330 10 C 0.299 3.701 11 O -0.412 6.412 12 C 0.277 3.723 13 O -0.434 6.434 14 N -0.318 5.318 15 C 0.046 3.954 16 C -0.025 4.025 17 C -0.618 4.618 18 H 0.066 0.934 19 C -0.216 4.216 20 N -0.564 5.564 21 Si 0.932 3.068 22 H -0.207 1.207 23 H -0.212 1.212 24 H -0.197 1.197 25 C -0.203 4.203 26 C -0.210 4.210 27 H 0.071 0.929 28 H 0.101 0.899 29 H 0.079 0.921 30 H 0.097 0.903 31 H 0.122 0.878 32 H 0.094 0.906 33 H 0.109 0.891 34 H 0.261 0.739 35 H 0.252 0.748 36 H 0.057 0.943 37 H 0.077 0.923 38 H 0.078 0.922 39 H 0.102 0.898 40 H 0.112 0.888 41 H 0.105 0.895 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -0.853 -3.064 -19.349 19.609 hybrid contribution 1.363 0.037 -0.327 1.402 sum 0.510 -3.026 -19.676 19.914 Atomic orbital electron populations 1.21842 0.92398 1.02791 1.03047 1.22794 0.98363 1.00906 0.92441 0.87319 1.23453 0.96620 0.87419 0.95337 1.88902 1.72678 1.38446 1.30875 1.23905 0.96174 1.00387 0.83465 1.22840 0.97106 0.92000 0.87443 0.88579 1.45559 1.65836 1.15617 1.06038 1.19979 0.78602 0.87304 0.84246 1.90768 1.49430 1.18695 1.82305 1.20313 0.79733 0.87911 0.84324 1.90706 1.51466 1.18734 1.82445 1.45741 1.63485 1.15841 1.06695 1.20892 0.97327 0.91042 0.86181 1.19319 0.90200 1.00024 0.92934 1.21516 1.07562 0.97347 1.35329 0.93394 1.26922 1.04084 0.94747 0.95891 1.70819 1.27627 1.12266 1.45724 0.83022 0.72978 0.75020 0.75804 1.20748 1.21194 1.19732 1.22886 0.99936 0.95046 1.02440 1.22736 1.03708 0.97454 0.97128 0.92854 0.89856 0.92127 0.90320 0.87831 0.90647 0.89100 0.73911 0.74834 0.94299 0.92271 0.92250 0.89766 0.88772 0.89528 0.91355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.70 8.92 71.98 0.64 -1.06 16 2 C -0.13 -1.61 3.38 -9.80 -0.03 -1.64 16 3 H 0.11 1.07 7.73 -2.39 -0.02 1.05 16 4 C 0.05 0.61 7.36 72.35 0.53 1.14 16 5 O -0.39 -7.70 11.52 -148.98 -1.72 -9.42 16 6 C 0.04 0.75 7.41 72.67 0.54 1.29 16 7 C 0.11 2.13 2.96 46.29 0.14 2.26 16 8 H 0.10 2.17 7.45 -2.39 -0.02 2.16 16 9 N -0.68 -15.12 5.21 -437.74 -2.28 -17.40 16 10 C 0.52 15.87 7.89 87.27 0.69 16.56 16 11 O -0.54 -18.68 16.22 -3.24 -0.05 -18.73 16 12 C 0.50 17.93 7.89 87.27 0.69 18.61 16 13 O -0.55 -21.48 16.48 -3.25 -0.05 -21.54 16 14 N -0.67 -26.34 5.47 -464.40 -2.54 -28.88 16 15 C 0.17 7.38 5.36 86.38 0.46 7.85 16 16 C -0.02 -1.09 0.91 -52.93 -0.05 -1.14 16 17 C -0.58 -30.21 8.57 25.60 0.22 -29.99 16 18 H 0.05 2.51 7.82 -2.91 -0.02 2.49 16 19 C -0.02 -0.84 5.42 84.65 0.46 -0.38 16 20 N -0.93 -53.55 13.61 21.45 0.29 -53.26 16 21 Si 1.11 48.95 29.91 68.60 2.05 51.01 16 22 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 23 H -0.29 -12.66 7.11 99.48 0.71 -11.95 16 24 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 25 C -0.17 -6.48 9.96 30.60 0.30 -6.18 16 26 C -0.17 -7.35 8.97 30.60 0.27 -7.07 16 27 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.10 1.02 7.70 -2.39 -0.02 1.00 16 32 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.09 1.96 8.14 -2.38 -0.02 1.94 16 34 H 0.42 8.13 7.81 -92.71 -0.72 7.40 16 35 H 0.42 16.41 7.80 -92.71 -0.72 15.69 16 36 H 0.04 1.95 7.64 -2.39 -0.02 1.93 16 37 H 0.06 2.42 8.09 -2.39 -0.02 2.40 16 38 H 0.27 15.32 6.08 -92.70 -0.56 14.76 16 39 H 0.08 3.27 8.14 -2.39 -0.02 3.25 16 40 H 0.09 3.21 8.14 -2.39 -0.02 3.20 16 41 H 0.09 3.36 8.14 -2.39 -0.02 3.34 16 42 H 0.07 3.16 8.14 -2.39 -0.02 3.14 16 Total: -1.00 -64.23 354.27 0.36 -63.86 By element: Atomic # 1 Polarization: 34.30 SS G_CDS: -0.20 Total: 34.10 kcal Atomic # 6 Polarization: -4.61 SS G_CDS: 4.87 Total: 0.25 kcal Atomic # 7 Polarization: -95.01 SS G_CDS: -4.53 Total: -99.54 kcal Atomic # 8 Polarization: -47.86 SS G_CDS: -1.82 Total: -49.68 kcal Atomic # 14 Polarization: 48.95 SS G_CDS: 2.05 Total: 51.01 kcal Total: -64.23 0.36 -63.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333118473.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.202 kcal (2) G-P(sol) polarization free energy of solvation -64.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds