Wall clock time and date at job start Tue Mar 31 2020 03:20:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08991 * 110.83302 * 2 1 4 4 C 1.55005 * 110.90522 * 123.64437 * 2 1 3 5 5 O 1.44379 * 103.48984 * 155.21838 * 4 2 1 6 6 C 1.43738 * 106.97917 * 319.94275 * 5 4 2 7 7 C 1.54104 * 107.29455 * 26.51045 * 6 5 4 8 8 H 1.08998 * 110.48659 * 239.16516 * 7 6 5 9 9 N 1.46501 * 110.48769 * 116.64583 * 7 6 5 10 10 C 1.34773 * 119.99660 * 86.45703 * 9 7 6 11 11 O 1.21351 * 120.00215 * 359.97438 * 10 9 7 12 12 C 1.49452 * 120.00220 * 179.97438 * 10 9 7 13 13 O 1.21353 * 119.99462 * 5.09405 * 12 10 9 14 14 N 1.34769 * 120.00494 * 185.09411 * 12 10 9 15 15 C 1.46501 * 120.00165 * 184.72107 * 14 12 10 16 16 C 1.53008 * 109.46920 * 184.75435 * 15 14 12 17 17 C 1.50693 * 115.55051 * 297.60819 * 16 15 14 18 18 H 1.08005 * 120.00453 * 92.22124 * 17 16 15 19 19 C 1.37887 * 119.99830 * 272.22231 * 17 16 15 20 20 N 1.31515 * 119.99842 * 180.30007 * 19 17 16 21 21 Si 1.86798 * 120.00014 * 0.29478 * 19 17 16 22 22 H 1.48493 * 109.47114 * 266.11745 * 21 19 17 23 23 H 1.48505 * 109.46594 * 146.12049 * 21 19 17 24 24 H 1.48500 * 109.47035 * 26.12237 * 21 19 17 25 25 C 1.53003 * 117.51608 * 83.31359 * 16 15 14 26 26 C 1.53000 * 60.00014 * 107.47976 * 25 16 15 27 27 H 1.09002 * 109.47231 * 183.64902 * 1 2 3 28 28 H 1.08998 * 109.47325 * 303.65434 * 1 2 3 29 29 H 1.08999 * 109.46744 * 63.65299 * 1 2 3 30 30 H 1.09004 * 110.61846 * 36.72195 * 4 2 1 31 31 H 1.08992 * 110.61722 * 273.72483 * 4 2 1 32 32 H 1.08996 * 109.88020 * 267.08922 * 6 5 4 33 33 H 1.08995 * 110.00613 * 146.00504 * 6 5 4 34 34 H 0.96996 * 120.00289 * 266.45783 * 9 7 6 35 35 H 0.97010 * 119.99924 * 4.71884 * 14 12 10 36 36 H 1.08999 * 109.47117 * 64.75975 * 15 14 12 37 37 H 1.08997 * 109.46840 * 304.75217 * 15 14 12 38 38 H 0.96999 * 120.00037 * 179.97438 * 20 19 17 39 39 H 1.09004 * 117.49328 * 214.96506 * 25 16 15 40 40 H 1.08994 * 117.50102 * 359.97438 * 25 16 15 41 41 H 1.09004 * 117.49482 * 252.50939 * 26 25 16 42 42 H 1.08995 * 117.50229 * 107.49098 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9176 1.0187 0.0000 4 6 2.0831 -0.8023 1.2055 5 8 3.3940 -1.2145 0.7627 6 6 3.2718 -1.5884 -0.6198 7 6 2.0825 -0.8014 -1.2038 8 1 1.3257 -1.4844 -1.5896 9 7 2.5375 0.1071 -2.2592 10 6 2.6493 -0.3354 -3.5273 11 8 2.3736 -1.4865 -3.7948 12 6 3.1129 0.5915 -4.6041 13 8 3.4766 1.7146 -4.3228 14 7 3.1270 0.1802 -5.8874 15 6 3.6776 1.0503 -6.9295 16 6 3.4666 0.4020 -8.2993 17 6 4.1597 -0.9200 -8.5063 18 1 3.6413 -1.8418 -8.2869 19 6 5.4557 -0.9529 -8.9759 20 7 6.0585 -2.1068 -9.1622 21 14 6.3552 0.6416 -9.3475 22 1 6.1936 0.9776 -10.7849 23 1 7.7982 0.4799 -9.0361 24 1 5.7889 1.7345 -8.5168 25 6 2.1076 0.6005 -8.9735 26 6 3.3409 1.3308 -9.5086 27 1 -0.3634 -1.0256 0.0654 28 1 -0.3634 0.5695 0.8554 29 1 -0.3633 0.4561 -0.9209 30 1 1.4561 -1.6704 1.4089 31 1 2.1581 -0.1665 2.0876 32 1 3.0825 -2.6588 -0.6989 33 1 4.1850 -1.3329 -1.1573 34 1 2.7582 1.0271 -2.0453 35 1 2.7725 -0.6920 -6.1211 36 1 4.7440 1.1946 -6.7563 37 1 3.1712 2.0151 -6.9023 38 1 6.9701 -2.1299 -9.4929 39 1 1.7148 -0.2252 -9.5668 40 1 1.3633 1.1927 -8.4411 41 1 3.4081 2.4037 -9.3283 42 1 3.7595 0.9857 -10.4539 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001333118474.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:20:28 Heat of formation + Delta-G solvation = -90.896484 kcal Electronic energy + Delta-G solvation = -24059.635207 eV Core-core repulsion = 20426.655717 eV Total energy + Delta-G solvation = -3632.979490 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 296.157 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.75684 -39.62758 -38.19044 -37.09238 -35.14184 -33.67311 -32.94010 -32.16410 -29.25166 -27.33684 -26.61965 -25.57581 -24.04594 -22.29184 -21.74859 -21.11311 -19.94829 -19.41758 -18.09520 -17.31483 -16.54156 -16.30517 -16.16026 -15.64131 -15.50939 -15.04430 -14.93105 -14.57437 -13.97320 -13.86323 -13.61072 -13.47197 -13.17123 -12.84120 -12.67915 -12.46993 -12.28617 -12.15512 -11.77036 -11.49482 -11.30572 -11.22326 -11.17810 -10.87468 -10.56476 -10.24919 -10.09796 -9.71159 -9.38870 -9.29954 -9.26146 -8.74468 -8.61844 -8.50453 -6.18353 -4.24147 1.63711 2.48951 3.24755 3.35772 3.38723 3.42939 3.58791 3.84930 4.02199 4.35957 4.39082 4.52638 4.65806 4.72791 4.93274 4.96215 4.99174 5.09967 5.19746 5.32127 5.38131 5.43876 5.58669 5.61091 5.62538 5.76423 5.93961 6.00218 6.10751 6.16681 6.33769 6.38328 6.49860 6.64052 6.75518 6.89830 7.02471 7.09655 7.62615 7.69422 7.99508 8.34991 8.39331 8.82942 9.43624 10.92804 Molecular weight = 296.16amu Principal moments of inertia in cm(-1) A = 0.024580 B = 0.003387 C = 0.003230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.876763 B = 8263.935928 C = 8667.240732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.133 4.133 3 H 0.095 0.905 4 C 0.051 3.949 5 O -0.375 6.375 6 C 0.035 3.965 7 C 0.115 3.885 8 H 0.108 0.892 9 N -0.699 5.699 10 C 0.509 3.491 11 O -0.511 6.511 12 C 0.498 3.502 13 O -0.541 6.541 14 N -0.664 5.664 15 C 0.152 3.848 16 C -0.018 4.018 17 C -0.495 4.495 18 H 0.080 0.920 19 C 0.081 3.919 20 N -0.892 5.892 21 Si 0.879 3.121 22 H -0.278 1.278 23 H -0.293 1.293 24 H -0.257 1.257 25 C -0.177 4.177 26 C -0.190 4.190 27 H 0.061 0.939 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.066 0.934 31 H 0.097 0.903 32 H 0.072 0.928 33 H 0.092 0.908 34 H 0.413 0.587 35 H 0.418 0.582 36 H 0.068 0.932 37 H 0.054 0.946 38 H 0.266 0.734 39 H 0.089 0.911 40 H 0.073 0.927 41 H 0.075 0.925 42 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.378 5.283 17.201 20.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.153 4.153 3 H 0.113 0.887 4 C -0.026 4.026 5 O -0.293 6.293 6 C -0.043 4.043 7 C 0.010 3.990 8 H 0.126 0.874 9 N -0.354 5.354 10 C 0.290 3.710 11 O -0.385 6.385 12 C 0.277 3.723 13 O -0.420 6.420 14 N -0.314 5.314 15 C 0.029 3.971 16 C -0.019 4.019 17 C -0.532 4.532 18 H 0.098 0.902 19 C -0.123 4.123 20 N -0.528 5.528 21 Si 0.706 3.294 22 H -0.204 1.204 23 H -0.220 1.220 24 H -0.181 1.181 25 C -0.215 4.215 26 C -0.228 4.228 27 H 0.081 0.919 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.084 0.916 31 H 0.115 0.885 32 H 0.090 0.910 33 H 0.110 0.890 34 H 0.250 0.750 35 H 0.256 0.744 36 H 0.087 0.913 37 H 0.072 0.928 38 H 0.076 0.924 39 H 0.108 0.892 40 H 0.092 0.908 41 H 0.094 0.906 42 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -9.928 5.109 17.222 20.525 hybrid contribution 0.467 0.777 -0.511 1.041 sum -9.461 5.886 16.711 20.085 Atomic orbital electron populations 1.21732 0.92938 1.02630 1.02726 1.23024 0.97442 1.00691 0.94102 0.88702 1.23631 0.84468 0.97674 0.96783 1.88916 1.28803 1.86428 1.25167 1.23686 0.99318 0.99065 0.82276 1.22532 0.96765 0.92230 0.87516 0.87375 1.45785 1.67327 1.15632 1.06655 1.20477 0.78397 0.88187 0.83896 1.90787 1.47143 1.18205 1.82396 1.19900 0.80838 0.87239 0.84316 1.90718 1.48827 1.19736 1.82680 1.45761 1.58322 1.22071 1.05245 1.21340 0.98182 0.91065 0.86479 1.19594 0.97274 0.96797 0.88275 1.20209 0.98071 0.89689 1.45201 0.90170 1.24992 0.97068 0.96081 0.94159 1.69889 1.13280 1.24840 1.44791 0.86855 0.78594 0.84699 0.79203 1.20424 1.21971 1.18070 1.22863 0.90969 1.02527 1.05100 1.22941 1.03626 0.96467 0.99725 0.91950 0.91763 0.91774 0.91602 0.88522 0.91029 0.89000 0.74972 0.74443 0.91334 0.92778 0.92414 0.89236 0.90845 0.90637 0.89062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.85 9.19 37.16 0.34 -0.51 16 2 C -0.13 -0.98 3.44 -88.61 -0.30 -1.28 16 3 H 0.09 0.66 7.75 -51.93 -0.40 0.26 16 4 C 0.05 0.38 7.18 38.22 0.27 0.66 16 5 O -0.37 -4.13 11.52 -35.23 -0.41 -4.54 16 6 C 0.03 0.38 7.50 37.73 0.28 0.66 16 7 C 0.11 1.15 2.93 -66.40 -0.19 0.96 16 8 H 0.11 1.14 7.39 -51.93 -0.38 0.75 16 9 N -0.70 -8.32 5.04 -52.75 -0.27 -8.59 16 10 C 0.51 7.91 7.88 -11.59 -0.09 7.82 16 11 O -0.51 -9.03 16.21 5.50 0.09 -8.94 16 12 C 0.50 8.83 7.88 -11.59 -0.09 8.73 16 13 O -0.54 -10.27 16.47 5.49 0.09 -10.18 16 14 N -0.66 -12.65 5.44 -60.73 -0.33 -12.98 16 15 C 0.15 3.11 5.19 -4.04 -0.02 3.09 16 16 C -0.02 -0.39 0.86 -155.66 -0.13 -0.53 16 17 C -0.49 -12.95 9.06 -34.44 -0.31 -13.26 16 18 H 0.08 2.29 8.06 -52.48 -0.42 1.87 16 19 C 0.08 2.21 5.47 -17.82 -0.10 2.12 16 20 N -0.89 -26.33 13.96 55.43 0.77 -25.55 16 21 Si 0.88 20.99 24.87 -169.99 -4.23 16.76 16 22 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 23 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 24 H -0.26 -5.78 5.69 56.52 0.32 -5.46 16 25 C -0.18 -3.36 9.95 -26.73 -0.27 -3.62 16 26 C -0.19 -3.79 7.44 -26.73 -0.20 -3.99 16 27 H 0.06 0.35 8.09 -51.93 -0.42 -0.07 16 28 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.42 8.01 -51.93 -0.42 0.00 16 31 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.09 1.13 7.93 -51.93 -0.41 0.72 16 34 H 0.41 4.46 7.83 -40.82 -0.32 4.14 16 35 H 0.42 8.07 7.74 -40.82 -0.32 7.76 16 36 H 0.07 1.51 6.85 -51.93 -0.36 1.16 16 37 H 0.05 1.03 8.07 -51.93 -0.42 0.61 16 38 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 39 H 0.09 1.71 8.14 -51.93 -0.42 1.29 16 40 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 41 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 42 H 0.09 1.91 7.12 -51.93 -0.37 1.54 16 LS Contribution 347.50 15.07 5.24 5.24 Total: -1.00 -30.78 347.50 -6.26 -37.04 By element: Atomic # 1 Polarization: 17.30 SS G_CDS: -6.41 Total: 10.89 kcal Atomic # 6 Polarization: 1.66 SS G_CDS: -0.81 Total: 0.84 kcal Atomic # 7 Polarization: -47.29 SS G_CDS: 0.18 Total: -47.12 kcal Atomic # 8 Polarization: -23.43 SS G_CDS: -0.23 Total: -23.66 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -4.23 Total: 16.76 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -30.78 -6.26 -37.04 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333118474.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.853 kcal (2) G-P(sol) polarization free energy of solvation -30.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds