Wall clock time and date at job start Tue Mar 31 2020 03:35:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.45746 * 117.94732 * 2 1 4 4 C 1.52929 * 110.48857 * 160.92523 * 3 2 1 5 5 C 1.53344 * 108.67365 * 50.74461 * 4 3 2 6 6 H 1.08999 * 109.67068 * 52.24381 * 5 4 3 7 7 C 1.50703 * 109.67397 * 172.73850 * 5 4 3 8 8 O 1.21278 * 119.99699 * 359.50279 * 7 5 4 9 9 N 1.34774 * 120.00137 * 179.50790 * 7 5 4 10 10 C 1.47419 * 125.64759 * 359.97162 * 9 7 5 11 11 C 1.54914 * 104.83401 * 155.91026 * 10 9 7 12 12 C 1.55157 * 101.57895 * 37.00788 * 11 10 9 13 13 O 1.42897 * 110.71976 * 83.04069 * 12 11 10 14 14 C 1.50701 * 110.72362 * 206.13513 * 12 11 10 15 15 H 1.08002 * 119.99761 * 118.54298 * 14 12 11 16 16 C 1.37871 * 119.99694 * 298.82861 * 14 12 11 17 17 N 1.31514 * 120.00482 * 359.71466 * 16 14 12 18 18 Si 1.86801 * 119.99746 * 179.72062 * 16 14 12 19 19 H 1.48504 * 109.47266 * 60.00049 * 18 16 14 20 20 H 1.48504 * 109.46970 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.47383 * 299.99456 * 18 16 14 22 22 C 1.47022 * 125.64930 * 180.02562 * 9 7 5 23 23 C 1.53065 * 108.45906 * 292.49367 * 5 4 3 24 24 C 1.33351 * 117.94305 * 179.97438 * 2 1 3 25 25 O 1.21287 * 118.24822 * 2.25719 * 24 2 1 26 26 H 1.09004 * 109.47088 * 89.99731 * 1 2 3 27 27 H 1.09002 * 109.47610 * 210.00547 * 1 2 3 28 28 H 1.08999 * 109.47016 * 330.00333 * 1 2 3 29 29 H 1.08999 * 109.30828 * 40.61182 * 3 2 1 30 30 H 1.09000 * 109.13625 * 281.12669 * 3 2 1 31 31 H 1.09008 * 109.59909 * 290.99625 * 4 3 2 32 32 H 1.09000 * 109.74013 * 170.58724 * 4 3 2 33 33 H 1.09004 * 110.37070 * 37.07483 * 10 9 7 34 34 H 1.09001 * 110.36781 * 274.74961 * 10 9 7 35 35 H 1.09000 * 111.00326 * 278.93651 * 11 10 9 36 36 H 1.08996 * 111.03671 * 155.09626 * 11 10 9 37 37 H 0.96697 * 114.00521 * 63.84056 * 13 12 11 38 38 H 0.96995 * 120.00207 * 179.97438 * 17 16 14 39 39 H 1.09008 * 109.88024 * 61.60068 * 22 9 7 40 40 H 1.08998 * 109.87947 * 300.44157 * 22 9 7 41 41 H 1.09000 * 109.40378 * 169.01136 * 23 5 4 42 42 H 1.09000 * 109.39939 * 288.75365 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1480 1.2875 0.0000 4 6 3.5949 1.1258 0.4682 5 6 4.2492 -0.0015 -0.3395 6 1 4.1093 0.1814 -1.4049 7 6 5.7217 -0.0628 -0.0244 8 8 6.2067 0.7232 0.7615 9 7 6.4994 -0.9909 -0.6162 10 6 6.0427 -2.0030 -1.5858 11 6 7.3083 -2.3729 -2.3989 12 6 8.4069 -2.3244 -1.3043 13 8 8.4474 -3.5520 -0.5740 14 6 9.7526 -2.0234 -1.9122 15 1 10.2872 -1.1301 -1.6250 16 6 10.2984 -2.8855 -2.8394 17 7 9.6474 -3.9733 -3.1892 18 14 11.9629 -2.5084 -3.5988 19 1 12.9901 -2.4351 -2.5288 20 1 12.3241 -3.5828 -4.5583 21 1 11.8982 -1.2079 -4.3128 22 6 7.9436 -1.1623 -0.4007 23 6 3.5839 -1.3245 0.0479 24 6 2.0899 -1.1780 0.0005 25 8 1.4157 -2.1854 -0.0411 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3634 -0.8899 0.5139 28 1 -0.3633 0.8900 0.5138 29 1 1.6271 1.9718 0.6696 30 1 2.1399 1.6963 -1.0104 31 1 3.6101 0.8725 1.5283 32 1 4.1402 2.0557 0.3065 33 1 5.2799 -1.5832 -2.2416 34 1 5.6564 -2.8796 -1.0657 35 1 7.5010 -1.6359 -3.1786 36 1 7.2227 -3.3735 -2.8225 37 1 8.6952 -4.3193 -1.1077 38 1 10.0313 -4.5796 -3.8418 39 1 8.1362 -1.4056 0.6443 40 1 8.4702 -0.2479 -0.6737 41 1 3.8944 -2.1035 -0.6483 42 1 3.8880 -1.6007 1.0575 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001346082859.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:35:31 Heat of formation + Delta-G solvation = -140.359310 kcal Electronic energy + Delta-G solvation = -24964.909289 eV Core-core repulsion = 21329.784930 eV Total energy + Delta-G solvation = -3635.124360 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 296.157 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.93627 -40.79597 -39.10019 -37.37848 -36.17551 -35.10290 -34.20417 -31.58536 -30.75641 -30.00968 -28.45795 -26.97215 -25.71589 -24.28358 -23.30797 -21.53786 -20.28521 -19.76462 -19.16278 -18.30114 -17.56875 -17.43037 -17.03435 -16.87743 -16.67249 -16.21688 -15.98266 -15.39819 -15.27376 -14.86667 -14.76434 -14.34382 -13.87831 -13.80376 -13.62229 -13.41566 -13.25330 -13.21800 -13.10454 -12.82395 -12.65649 -12.58030 -12.44507 -12.29336 -12.04019 -11.99839 -11.94075 -11.37132 -11.20927 -10.69575 -10.55889 -10.14443 -9.75602 -9.64660 -8.24253 -6.39221 1.43071 1.45191 1.48787 1.51866 1.55474 1.97574 2.01271 2.39796 3.00923 3.26162 3.55019 3.57259 3.67738 3.83068 3.97795 4.05588 4.16230 4.28909 4.34471 4.40352 4.46622 4.54604 4.60236 4.63880 4.65267 4.72653 4.82112 4.90806 4.97806 4.99863 5.16141 5.17723 5.25895 5.41128 5.46096 5.54019 5.76660 6.07406 6.35998 6.56537 6.65355 7.05216 7.08243 7.31038 7.40180 8.81085 Molecular weight = 296.16amu Principal moments of inertia in cm(-1) A = 0.030167 B = 0.003656 C = 0.003460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.949567 B = 7656.530299 C = 8090.198836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.605 5.605 3 C 0.116 3.884 4 C -0.113 4.113 5 C -0.094 4.094 6 H 0.126 0.874 7 C 0.526 3.474 8 O -0.582 6.582 9 N -0.609 5.609 10 C 0.101 3.899 11 C -0.126 4.126 12 C 0.234 3.766 13 O -0.594 6.594 14 C -0.565 4.565 15 H 0.052 0.948 16 C 0.038 3.962 17 N -0.905 5.905 18 Si 0.958 3.042 19 H -0.278 1.278 20 H -0.279 1.279 21 H -0.272 1.272 22 C 0.129 3.871 23 C -0.125 4.125 24 C 0.520 3.480 25 O -0.594 6.594 26 H 0.063 0.937 27 H 0.058 0.942 28 H 0.103 0.897 29 H 0.111 0.889 30 H 0.091 0.909 31 H 0.069 0.931 32 H 0.101 0.899 33 H 0.099 0.901 34 H 0.071 0.929 35 H 0.059 0.941 36 H 0.077 0.923 37 H 0.380 0.620 38 H 0.272 0.728 39 H 0.043 0.957 40 H 0.062 0.938 41 H 0.110 0.890 42 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.340 9.563 1.457 18.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.336 5.336 3 C -0.005 4.005 4 C -0.151 4.151 5 C -0.115 4.115 6 H 0.144 0.856 7 C 0.316 3.684 8 O -0.463 6.463 9 N -0.341 5.341 10 C -0.020 4.020 11 C -0.164 4.164 12 C 0.194 3.806 13 O -0.402 6.402 14 C -0.603 4.603 15 H 0.070 0.930 16 C -0.163 4.163 17 N -0.544 5.544 18 Si 0.783 3.217 19 H -0.204 1.204 20 H -0.204 1.204 21 H -0.198 1.198 22 C 0.006 3.994 23 C -0.165 4.165 24 C 0.309 3.691 25 O -0.476 6.476 26 H 0.082 0.918 27 H 0.077 0.923 28 H 0.121 0.879 29 H 0.129 0.871 30 H 0.110 0.890 31 H 0.087 0.913 32 H 0.119 0.881 33 H 0.117 0.883 34 H 0.090 0.910 35 H 0.077 0.923 36 H 0.096 0.904 37 H 0.230 0.770 38 H 0.081 0.919 39 H 0.061 0.939 40 H 0.080 0.920 41 H 0.128 0.872 42 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -16.641 9.776 2.256 19.431 hybrid contribution 1.617 -0.614 -0.782 1.898 sum -15.023 9.162 1.475 17.658 Atomic orbital electron populations 1.21862 0.78233 1.03864 1.02822 1.47410 1.08500 1.06216 1.71510 1.21712 0.91388 0.83412 1.04004 1.21731 0.94872 0.98705 0.99766 1.21396 0.88856 0.96975 1.04302 0.85628 1.20748 0.89147 0.78925 0.79610 1.90654 1.76341 1.42201 1.37082 1.48709 1.09113 1.32530 1.43700 1.22613 0.97979 0.90876 0.90562 1.23083 0.93802 1.01810 0.97743 1.19602 0.92907 0.81255 0.86834 1.86108 1.92417 1.19401 1.42310 1.21710 1.04924 1.08882 1.24781 0.92965 1.25572 1.00553 0.94534 0.95675 1.69744 1.39273 1.12244 1.33091 0.85622 0.79920 0.78029 0.78095 1.20390 1.20382 1.19751 1.21779 0.80594 0.98136 0.98852 1.21698 0.90782 0.98576 1.05483 1.20037 0.90437 0.83122 0.75532 1.90705 1.66884 1.37412 1.52627 0.91830 0.92327 0.87886 0.87069 0.89045 0.91259 0.88093 0.88280 0.91043 0.92253 0.90399 0.77035 0.91896 0.93853 0.91971 0.87228 0.88519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.02 10.22 127.77 1.31 2.33 16 2 N -0.60 -10.56 3.21 -851.59 -2.73 -13.30 16 3 C 0.12 1.31 6.39 86.50 0.55 1.87 16 4 C -0.11 -1.96 4.71 30.69 0.14 -1.81 16 5 C -0.09 -2.10 1.94 -11.40 -0.02 -2.12 16 6 H 0.13 2.28 7.84 -2.39 -0.02 2.27 16 7 C 0.53 17.29 7.19 87.66 0.63 17.92 16 8 O -0.58 -22.93 16.22 -3.02 -0.05 -22.98 16 9 N -0.61 -22.20 3.32 -811.79 -2.70 -24.90 16 10 C 0.10 3.34 5.15 86.86 0.45 3.79 16 11 C -0.13 -5.19 5.47 31.99 0.17 -5.02 16 12 C 0.23 11.12 0.85 -10.35 -0.01 11.11 16 13 O -0.59 -29.67 13.09 -148.98 -1.95 -31.62 16 14 C -0.56 -29.39 8.21 25.60 0.21 -29.18 16 15 H 0.05 2.75 7.57 -2.91 -0.02 2.73 16 16 C 0.04 1.93 5.26 84.65 0.45 2.38 16 17 N -0.90 -45.48 10.65 21.45 0.23 -45.25 16 18 Si 0.96 40.75 29.54 68.60 2.03 42.77 16 19 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 20 H -0.28 -11.48 7.11 99.48 0.71 -10.78 16 21 H -0.27 -11.39 7.11 99.48 0.71 -10.69 16 22 C 0.13 5.74 6.22 86.73 0.54 6.28 16 23 C -0.13 -2.99 4.98 29.71 0.15 -2.84 16 24 C 0.52 12.87 7.47 87.72 0.66 13.53 16 25 O -0.59 -19.47 16.21 -3.05 -0.05 -19.52 16 26 H 0.06 0.80 8.14 -2.38 -0.02 0.78 16 27 H 0.06 1.08 7.20 -2.39 -0.02 1.06 16 28 H 0.10 0.72 7.86 -2.39 -0.02 0.70 16 29 H 0.11 0.69 7.92 -2.39 -0.02 0.67 16 30 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.07 1.37 8.12 -2.38 -0.02 1.35 16 32 H 0.10 1.74 7.89 -2.39 -0.02 1.72 16 33 H 0.10 2.53 7.28 -2.39 -0.02 2.52 16 34 H 0.07 2.32 7.34 -2.39 -0.02 2.30 16 35 H 0.06 2.52 8.04 -2.39 -0.02 2.50 16 36 H 0.08 3.39 7.53 -2.39 -0.02 3.37 16 37 H 0.38 19.09 7.43 -74.06 -0.55 18.54 16 38 H 0.27 13.06 8.31 -92.71 -0.77 12.29 16 39 H 0.04 2.04 8.07 -2.38 -0.02 2.02 16 40 H 0.06 2.84 7.66 -2.39 -0.02 2.82 16 41 H 0.11 2.69 5.52 -2.39 -0.01 2.67 16 42 H 0.10 2.47 8.09 -2.39 -0.02 2.45 16 Total: -1.00 -66.29 333.61 0.48 -65.81 By element: Atomic # 1 Polarization: 30.28 SS G_CDS: 0.49 Total: 30.76 kcal Atomic # 6 Polarization: 13.00 SS G_CDS: 5.22 Total: 18.22 kcal Atomic # 7 Polarization: -78.25 SS G_CDS: -5.20 Total: -83.45 kcal Atomic # 8 Polarization: -72.07 SS G_CDS: -2.05 Total: -74.12 kcal Atomic # 14 Polarization: 40.75 SS G_CDS: 2.03 Total: 42.77 kcal Total: -66.29 0.48 -65.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346082859.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.553 kcal (2) G-P(sol) polarization free energy of solvation -66.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds