Wall clock time and date at job start Tue Mar 31 2020 03:58:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.39862 * 126.03833 * 2 1 4 4 N 1.30837 * 108.20185 * 179.73747 * 3 2 1 5 5 N 1.40081 * 108.20735 * 0.40731 * 4 3 2 6 6 C 1.46493 * 126.04124 * 179.85556 * 5 4 3 7 7 C 1.52999 * 109.46853 * 304.68675 * 6 5 4 8 8 C 1.50703 * 109.47148 * 180.02562 * 7 6 5 9 9 O 1.21273 * 120.00280 * 359.97438 * 8 7 6 10 10 N 1.34781 * 120.00160 * 179.97438 * 8 7 6 11 11 C 1.46493 * 120.00398 * 179.97438 * 10 8 7 12 12 C 1.52993 * 109.47346 * 180.02562 * 11 10 8 13 13 H 1.09004 * 109.47177 * 65.00353 * 12 11 10 14 14 C 1.53006 * 109.47133 * 185.00123 * 12 11 10 15 15 O 1.42903 * 109.47139 * 55.00254 * 14 12 11 16 16 N 1.46493 * 109.47542 * 305.00099 * 12 11 10 17 17 C 1.36936 * 120.00314 * 154.99721 * 16 12 11 18 18 H 1.08001 * 120.00159 * 0.02562 * 17 16 12 19 19 C 1.38811 * 119.99842 * 180.02562 * 17 16 12 20 20 N 1.31624 * 119.99540 * 179.72505 * 19 17 16 21 21 Si 1.86800 * 120.00451 * 0.02562 * 19 17 16 22 22 H 1.48501 * 109.46758 * 269.72270 * 21 19 17 23 23 H 1.48499 * 109.47026 * 29.72118 * 21 19 17 24 24 H 1.48496 * 109.47474 * 149.72153 * 21 19 17 25 25 C 1.34953 * 107.92446 * 359.58500 * 5 4 3 26 26 H 1.09001 * 109.46641 * 269.99731 * 1 2 3 27 27 H 1.08995 * 109.47214 * 30.00348 * 1 2 3 28 28 H 1.09007 * 109.46799 * 150.00291 * 1 2 3 29 29 H 1.08007 * 125.89731 * 359.97438 * 3 2 1 30 30 H 1.09001 * 109.47481 * 184.68666 * 6 5 4 31 31 H 1.08999 * 109.47549 * 64.68181 * 6 5 4 32 32 H 1.08997 * 109.47785 * 59.99648 * 7 6 5 33 33 H 1.09008 * 109.47087 * 299.99698 * 7 6 5 34 34 H 0.96998 * 119.99643 * 359.97438 * 10 8 7 35 35 H 1.09009 * 109.46774 * 60.00205 * 11 10 8 36 36 H 1.09002 * 109.47338 * 300.00832 * 11 10 8 37 37 H 1.08997 * 109.47285 * 175.00337 * 14 12 11 38 38 H 1.09002 * 109.47155 * 295.00382 * 14 12 11 39 39 H 0.96700 * 113.99965 * 180.02562 * 15 14 12 40 40 H 0.97000 * 120.00040 * 334.99853 * 16 12 11 41 41 H 0.96999 * 119.99889 * 180.27497 * 20 19 17 42 42 H 1.07995 * 126.13273 * 180.22026 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3299 1.1310 0.0000 4 7 3.5754 0.7302 0.0057 5 7 3.5845 -0.6706 0.0000 6 6 4.7746 -1.5248 0.0006 7 6 5.6715 -1.1504 -1.1810 8 6 6.8956 -2.0295 -1.1809 9 8 7.0369 -2.8722 -0.3203 10 7 7.8333 -1.8794 -2.1373 11 6 9.0234 -2.7335 -2.1369 12 6 9.9202 -2.3593 -3.3186 13 1 10.2939 -1.3442 -3.1839 14 6 11.0996 -3.3313 -3.3917 15 8 10.6088 -4.6721 -3.4512 16 7 9.1478 -2.4344 -4.5610 17 6 9.5239 -1.6904 -5.6473 18 1 10.3904 -1.0484 -5.5883 19 6 8.7916 -1.7613 -6.8244 20 7 9.1501 -1.0420 -7.8668 21 14 7.2925 -2.8711 -6.9264 22 1 7.7044 -4.2169 -7.4004 23 1 6.6710 -2.9883 -5.5829 24 1 6.3105 -2.2906 -7.8771 25 6 2.3032 -1.0942 0.0001 26 1 -0.3633 0.0000 1.0277 27 1 -0.3633 0.8899 -0.5139 28 1 -0.3633 -0.8901 -0.5138 29 1 1.9950 2.1578 -0.0004 30 1 4.4729 -2.5684 -0.0886 31 1 5.3230 -1.3834 0.9319 32 1 5.9733 -0.1068 -1.0920 33 1 5.1232 -1.2918 -2.1125 34 1 7.7201 -1.2057 -2.8259 35 1 8.7215 -3.7772 -2.2257 36 1 9.5720 -2.5920 -1.2057 37 1 11.6895 -3.1204 -4.2837 38 1 11.7242 -3.2120 -2.5064 39 1 11.3032 -5.3433 -3.4990 40 1 8.3697 -3.0113 -4.6143 41 1 8.6360 -1.0884 -8.6880 42 1 1.9724 -2.1223 -0.0003 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001486065612.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:58:07 Heat of formation + Delta-G solvation = -27.879010 kcal Electronic energy + Delta-G solvation = -23412.352696 eV Core-core repulsion = 19814.398600 eV Total energy + Delta-G solvation = -3597.954097 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 296.164 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.14424 -40.84566 -38.76414 -36.50011 -35.53188 -35.24183 -33.44697 -32.62090 -31.61682 -30.47866 -27.71499 -26.50934 -25.38621 -24.74256 -21.85470 -21.73397 -21.40502 -20.88611 -19.86283 -18.47388 -18.30126 -17.47906 -17.13010 -16.88626 -16.61089 -16.12547 -15.59333 -15.31650 -15.12584 -15.04309 -14.69328 -14.47811 -14.34305 -14.21781 -14.03781 -13.76127 -13.62693 -13.21726 -13.05970 -12.85557 -12.70240 -12.64370 -12.40431 -12.34997 -11.90581 -11.80325 -11.44269 -11.17143 -10.97496 -10.76235 -10.41400 -10.08817 -9.35163 -9.23337 -8.02771 -5.35449 0.95439 1.35704 1.39854 1.45117 1.48701 1.53434 1.88957 2.26366 2.46828 3.29050 3.43409 3.50582 3.64729 3.68535 3.83880 3.92588 4.03223 4.11610 4.30497 4.37045 4.45497 4.51301 4.53566 4.60108 4.65609 4.76414 4.80258 4.95283 4.96800 5.02809 5.15686 5.27689 5.33189 5.42408 5.76536 5.78355 6.11796 6.20764 6.47636 6.76468 7.01136 7.07410 7.12949 7.81557 8.00449 9.18199 Molecular weight = 296.16amu Principal moments of inertia in cm(-1) A = 0.014721 B = 0.003464 C = 0.003007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1901.604892 B = 8082.052980 C = 9309.543426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.255 4.255 3 C 0.039 3.961 4 N -0.334 5.334 5 N -0.381 5.381 6 C 0.157 3.843 7 C -0.143 4.143 8 C 0.520 3.480 9 O -0.579 6.579 10 N -0.716 5.716 11 C 0.127 3.873 12 C 0.165 3.835 13 H 0.080 0.920 14 C 0.065 3.935 15 O -0.583 6.583 16 N -0.740 5.740 17 C -0.222 4.222 18 H 0.066 0.934 19 C -0.056 4.056 20 N -0.980 5.980 21 Si 0.947 3.053 22 H -0.289 1.289 23 H -0.256 1.256 24 H -0.298 1.298 25 C 0.048 3.952 26 H 0.067 0.933 27 H 0.069 0.931 28 H 0.068 0.932 29 H 0.202 0.798 30 H 0.117 0.883 31 H 0.087 0.913 32 H 0.109 0.891 33 H 0.103 0.897 34 H 0.411 0.589 35 H 0.061 0.939 36 H 0.083 0.917 37 H 0.034 0.966 38 H 0.069 0.931 39 H 0.388 0.612 40 H 0.364 0.636 41 H 0.256 0.744 42 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.908 -1.371 17.935 21.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.267 4.267 3 C -0.146 4.146 4 N -0.155 5.155 5 N -0.163 5.163 6 C 0.035 3.965 7 C -0.183 4.183 8 C 0.306 3.694 9 O -0.460 6.460 10 N -0.367 5.367 11 C 0.002 3.998 12 C 0.056 3.944 13 H 0.097 0.903 14 C -0.015 4.015 15 O -0.390 6.390 16 N -0.383 5.383 17 C -0.353 4.353 18 H 0.084 0.916 19 C -0.248 4.248 20 N -0.631 5.631 21 Si 0.776 3.224 22 H -0.216 1.216 23 H -0.181 1.181 24 H -0.225 1.225 25 C -0.097 4.097 26 H 0.085 0.915 27 H 0.088 0.912 28 H 0.087 0.913 29 H 0.219 0.781 30 H 0.135 0.865 31 H 0.106 0.894 32 H 0.127 0.873 33 H 0.121 0.879 34 H 0.247 0.753 35 H 0.080 0.920 36 H 0.101 0.899 37 H 0.052 0.948 38 H 0.087 0.913 39 H 0.237 0.763 40 H 0.197 0.803 41 H 0.065 0.935 42 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -10.878 -1.238 18.454 21.458 hybrid contribution -0.740 -0.720 -1.180 1.568 sum -11.619 -1.957 17.274 20.910 Atomic orbital electron populations 1.20080 0.87446 1.02935 1.02133 1.20556 0.98510 0.91488 1.16116 1.24307 0.89701 1.01255 0.99375 1.77279 1.22666 0.89899 1.25696 1.48728 1.06090 1.04463 1.57025 1.21373 0.83138 0.93144 0.98819 1.21781 0.94063 1.01376 1.01107 1.20608 0.84378 0.83686 0.80692 1.90674 1.79267 1.37338 1.38675 1.46066 1.21624 1.38914 1.30123 1.21448 0.85825 0.94383 0.98101 1.20829 0.91205 0.97639 0.84727 0.90262 1.22796 0.96342 0.82746 0.99658 1.86454 1.38680 1.16407 1.97475 1.42688 1.32884 1.52550 1.10183 1.19013 1.09127 1.17163 0.90010 0.91557 1.25322 1.02181 1.01442 0.95827 1.69855 1.43177 1.46225 1.03803 0.85536 0.80435 0.78606 0.77810 1.21592 1.18070 1.22543 1.22958 0.83568 1.01641 1.01566 0.91470 0.91205 0.91345 0.78147 0.86522 0.89426 0.87279 0.87888 0.75311 0.92033 0.89933 0.94769 0.91278 0.76335 0.80335 0.93463 0.78358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.80 10.37 71.24 0.74 -0.06 16 2 C -0.26 -4.61 6.10 -20.14 -0.12 -4.74 16 3 C 0.04 0.81 11.96 85.23 1.02 1.83 16 4 N -0.33 -8.54 12.42 -57.02 -0.71 -9.25 16 5 N -0.38 -8.55 3.68 -348.07 -1.28 -9.82 16 6 C 0.16 3.30 5.80 86.38 0.50 3.80 16 7 C -0.14 -3.27 5.89 29.85 0.18 -3.09 16 8 C 0.52 14.67 7.83 87.66 0.69 15.36 16 9 O -0.58 -19.17 15.98 -3.01 -0.05 -19.22 16 10 N -0.72 -21.07 5.39 -463.07 -2.49 -23.57 16 11 C 0.13 3.87 5.12 86.38 0.44 4.31 16 12 C 0.16 5.56 2.84 44.99 0.13 5.69 16 13 H 0.08 2.62 8.08 -2.39 -0.02 2.60 16 14 C 0.07 1.97 6.86 71.98 0.49 2.46 16 15 O -0.58 -17.68 12.64 -148.98 -1.88 -19.56 16 16 N -0.74 -31.76 4.31 -322.95 -1.39 -33.15 16 17 C -0.22 -11.72 10.41 84.03 0.87 -10.85 16 18 H 0.07 3.79 8.06 -2.91 -0.02 3.76 16 19 C -0.06 -3.16 5.50 84.86 0.47 -2.69 16 20 N -0.98 -60.75 13.97 21.65 0.30 -60.44 16 21 Si 0.95 45.00 27.74 68.60 1.90 46.90 16 22 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 23 H -0.26 -11.03 6.51 99.48 0.65 -10.38 16 24 H -0.30 -14.42 7.11 99.48 0.71 -13.71 16 25 C 0.05 0.88 11.36 83.54 0.95 1.83 16 26 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 27 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 28 H 0.07 0.69 8.14 -2.38 -0.02 0.67 16 29 H 0.20 2.93 8.06 -2.91 -0.02 2.90 16 30 H 0.12 2.12 8.03 -2.39 -0.02 2.10 16 31 H 0.09 1.93 8.10 -2.39 -0.02 1.91 16 32 H 0.11 2.51 8.14 -2.39 -0.02 2.49 16 33 H 0.10 2.31 8.14 -2.38 -0.02 2.29 16 34 H 0.41 12.24 8.14 -92.71 -0.75 11.48 16 35 H 0.06 2.10 7.40 -2.38 -0.02 2.08 16 36 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 37 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 38 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 39 H 0.39 7.96 9.12 -74.06 -0.68 7.28 16 40 H 0.36 15.97 5.65 -92.71 -0.52 15.45 16 41 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 42 H 0.20 2.28 8.06 -2.91 -0.02 2.26 16 Total: -1.00 -73.16 359.02 -0.21 -73.37 By element: Atomic # 1 Polarization: 41.86 SS G_CDS: -0.96 Total: 40.90 kcal Atomic # 6 Polarization: 7.50 SS G_CDS: 6.35 Total: 13.85 kcal Atomic # 7 Polarization: -130.66 SS G_CDS: -5.57 Total: -136.23 kcal Atomic # 8 Polarization: -36.85 SS G_CDS: -1.93 Total: -38.79 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 1.90 Total: 46.90 kcal Total: -73.16 -0.21 -73.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486065612.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.492 kcal (2) G-P(sol) polarization free energy of solvation -73.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds