Wall clock time and date at job start Tue Mar 31 2020 03:56:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.39671 * 126.07085 * 2 1 4 4 C 1.38411 * 105.35936 * 179.84781 * 3 2 1 5 5 C 1.47162 * 126.88250 * 180.13593 * 4 3 2 6 6 O 1.21629 * 119.99534 * 163.53554 * 5 4 3 7 7 N 1.34770 * 119.99941 * 343.53463 * 5 4 3 8 8 C 1.46497 * 120.00312 * 359.86352 * 7 5 4 9 9 C 1.46511 * 119.99786 * 179.86729 * 7 5 4 10 10 C 1.52991 * 109.47235 * 89.99863 * 9 7 5 11 11 H 1.09002 * 109.47493 * 304.99912 * 10 9 7 12 12 O 1.42900 * 109.47389 * 65.00313 * 10 9 7 13 13 C 1.53006 * 109.47030 * 185.00143 * 10 9 7 14 14 N 1.46500 * 109.47133 * 179.97438 * 13 10 9 15 15 C 1.36937 * 119.99836 * 179.97438 * 14 13 10 16 16 H 1.07992 * 120.00200 * 0.02562 * 15 14 13 17 17 C 1.38819 * 119.99575 * 180.02562 * 15 14 13 18 18 N 1.31616 * 120.00413 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99542 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47224 * 359.97438 * 19 17 15 21 21 H 1.48494 * 109.47317 * 120.00201 * 19 17 15 22 22 H 1.48504 * 109.46728 * 240.00045 * 19 17 15 23 23 N 1.36599 * 106.23073 * 0.40065 * 4 3 2 24 24 C 1.46493 * 125.19058 * 179.73897 * 23 4 3 25 25 N 1.28450 * 109.61658 * 359.73556 * 23 4 3 26 26 H 1.09000 * 109.47202 * 269.72079 * 1 2 3 27 27 H 1.08999 * 109.47094 * 149.72200 * 1 2 3 28 28 H 1.09003 * 109.46714 * 29.72062 * 1 2 3 29 29 H 1.08000 * 127.31795 * 359.97438 * 3 2 1 30 30 H 1.08994 * 109.46921 * 83.28499 * 8 7 5 31 31 H 1.09009 * 109.46919 * 203.28452 * 8 7 5 32 32 H 1.08994 * 109.47125 * 323.28341 * 8 7 5 33 33 H 1.08997 * 109.46604 * 210.00275 * 9 7 5 34 34 H 1.09000 * 109.46909 * 329.99648 * 9 7 5 35 35 H 0.96699 * 114.00461 * 59.99469 * 12 10 9 36 36 H 1.08995 * 109.46855 * 299.99836 * 13 10 9 37 37 H 1.08992 * 109.46866 * 59.99975 * 13 10 9 38 38 H 0.97002 * 119.99794 * 359.97438 * 14 13 10 39 39 H 0.96994 * 119.99794 * 180.02562 * 18 17 15 40 40 H 1.08998 * 109.47439 * 265.65523 * 24 23 4 41 41 H 1.08998 * 109.47081 * 25.65487 * 24 23 4 42 42 H 1.08998 * 109.47047 * 145.65546 * 24 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3293 1.1289 0.0000 4 6 3.6240 0.6394 0.0035 5 6 4.8664 1.4281 0.0078 6 8 5.9203 0.9009 0.3091 7 7 4.8365 2.7344 -0.3223 8 6 3.5676 3.3686 -0.6882 9 6 6.0730 3.5203 -0.3152 10 6 6.7300 3.4497 -1.6951 11 1 6.8796 2.4065 -1.9735 12 8 5.8851 4.0831 -2.6579 13 6 8.0817 4.1654 -1.6536 14 7 8.7111 4.0974 -2.9747 15 6 9.9361 4.6738 -3.1800 16 1 10.4384 5.1783 -2.3680 17 6 10.5322 4.6098 -4.4321 18 7 9.9202 3.9946 -5.4217 19 14 12.2036 5.3956 -4.7119 20 1 12.6753 6.0189 -3.4493 21 1 13.1729 4.3568 -5.1439 22 1 12.0911 6.4363 -5.7653 23 7 3.5173 -0.7224 -0.0037 24 6 4.6449 -1.6575 -0.0086 25 7 2.2774 -1.0578 -0.0055 26 1 -0.3633 -0.0050 1.0276 27 1 -0.3633 -0.8875 -0.5181 28 1 -0.3633 0.8925 -0.5095 29 1 2.0206 2.1639 -0.0004 30 1 3.0356 3.6649 0.2158 31 1 3.7647 4.2497 -1.2991 32 1 2.9586 2.6633 -1.2535 33 1 5.8424 4.5582 -0.0751 34 1 6.7553 3.1172 0.4331 35 1 5.7085 5.0158 -2.4733 36 1 7.9320 5.2086 -1.3753 37 1 8.7261 3.6823 -0.9192 38 1 8.2600 3.6439 -3.7040 39 1 10.3370 3.9495 -6.2964 40 1 4.8750 -1.9439 -1.0348 41 1 5.5159 -1.1788 0.4389 42 1 4.3829 -2.5456 0.5664 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001486263572.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:56:43 Heat of formation + Delta-G solvation = -7.116746 kcal Electronic energy + Delta-G solvation = -24070.636276 eV Core-core repulsion = 20473.582499 eV Total energy + Delta-G solvation = -3597.053777 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 296.164 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.63162 -40.88909 -38.83107 -36.72052 -35.88200 -34.89094 -33.31532 -32.51880 -30.58080 -30.55935 -28.15712 -27.28124 -26.26872 -24.99239 -23.35868 -22.74671 -21.91541 -19.99091 -19.25487 -18.30967 -17.91499 -17.47891 -17.39504 -16.86359 -16.46939 -16.36941 -16.12377 -15.37729 -15.21811 -14.96926 -14.68433 -14.36061 -14.28030 -14.14182 -13.86601 -13.68052 -13.34545 -13.27038 -13.13769 -13.01620 -12.86299 -12.78383 -12.55520 -12.17056 -12.02331 -11.83813 -11.54278 -11.34411 -11.06572 -11.00421 -10.20312 -9.85363 -9.62884 -9.03012 -7.95979 -5.26162 0.17966 1.27140 1.46076 1.47716 1.54496 1.57770 1.96870 2.07760 2.54570 3.26814 3.35495 3.46922 3.50699 3.72989 3.97555 4.04162 4.15588 4.20268 4.26584 4.30135 4.37236 4.45136 4.53090 4.58314 4.62504 4.66288 4.76699 4.91311 4.92574 4.98499 5.03262 5.15128 5.19110 5.38865 5.46778 5.57189 5.74228 6.15648 6.24778 6.86769 6.91115 7.05706 7.31150 8.07182 8.29778 9.27746 Molecular weight = 296.16amu Principal moments of inertia in cm(-1) A = 0.028258 B = 0.002944 C = 0.002852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.640017 B = 9509.960803 C = 9814.281679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.011 3.989 3 C -0.184 4.184 4 C -0.055 4.055 5 C 0.578 3.422 6 O -0.577 6.577 7 N -0.584 5.584 8 C 0.057 3.943 9 C 0.099 3.901 10 C 0.104 3.896 11 H 0.061 0.939 12 O -0.562 6.562 13 C 0.124 3.876 14 N -0.743 5.743 15 C -0.246 4.246 16 H 0.079 0.921 17 C -0.080 4.080 18 N -0.971 5.971 19 Si 0.977 3.023 20 H -0.263 1.263 21 H -0.295 1.295 22 H -0.291 1.291 23 N -0.273 5.273 24 C 0.077 3.923 25 N -0.303 5.303 26 H 0.086 0.914 27 H 0.070 0.930 28 H 0.100 0.900 29 H 0.206 0.794 30 H 0.092 0.908 31 H 0.094 0.906 32 H 0.083 0.917 33 H 0.127 0.873 34 H 0.086 0.914 35 H 0.386 0.614 36 H 0.045 0.955 37 H 0.024 0.976 38 H 0.374 0.626 39 H 0.251 0.749 40 H 0.086 0.914 41 H 0.103 0.897 42 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.609 -2.964 14.918 26.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.145 4.145 3 C -0.212 4.212 4 C -0.183 4.183 5 C 0.366 3.634 6 O -0.458 6.458 7 N -0.314 5.314 8 C -0.084 4.084 9 C -0.025 4.025 10 C 0.043 3.957 11 H 0.079 0.921 12 O -0.369 6.369 13 C -0.004 4.004 14 N -0.385 5.385 15 C -0.377 4.377 16 H 0.097 0.903 17 C -0.272 4.272 18 N -0.622 5.622 19 Si 0.806 3.194 20 H -0.187 1.187 21 H -0.223 1.223 22 H -0.218 1.218 23 N -0.060 5.060 24 C -0.063 4.063 25 N -0.137 5.137 26 H 0.105 0.895 27 H 0.089 0.911 28 H 0.119 0.881 29 H 0.222 0.778 30 H 0.110 0.890 31 H 0.113 0.887 32 H 0.102 0.898 33 H 0.145 0.855 34 H 0.104 0.896 35 H 0.235 0.765 36 H 0.062 0.938 37 H 0.042 0.958 38 H 0.205 0.795 39 H 0.060 0.940 40 H 0.104 0.896 41 H 0.121 0.879 42 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -20.794 -4.971 14.880 26.048 hybrid contribution 1.325 1.068 -0.570 1.795 sum -19.469 -3.903 14.309 24.475 Atomic orbital electron populations 1.20238 0.83702 1.04390 1.03896 1.22790 0.98824 0.88519 1.04401 1.23136 0.88870 1.02289 1.06920 1.21454 0.96219 0.85581 1.15092 1.17284 0.86318 0.82514 0.77238 1.90758 1.32794 1.70982 1.51291 1.47440 1.10552 1.08015 1.65346 1.22712 0.83802 0.99819 1.02031 1.22180 0.85880 0.97888 0.96506 1.22184 0.88576 0.95936 0.88987 0.92097 1.86602 1.69214 1.29238 1.51810 1.21434 0.92869 0.98413 0.87653 1.42481 1.20255 1.67239 1.08561 1.19711 0.95477 1.27117 0.95431 0.90287 1.25661 1.02894 1.02609 0.95996 1.69863 1.40499 1.49802 1.01995 0.85017 0.79194 0.77292 0.77898 1.18715 1.22256 1.21806 1.45736 1.05462 1.04661 1.50180 1.22481 0.85556 0.93113 1.05121 1.73105 0.89732 1.29305 1.21605 0.89550 0.91150 0.88087 0.77775 0.89013 0.88707 0.89835 0.85497 0.89577 0.76533 0.93757 0.95775 0.79461 0.94050 0.89561 0.87871 0.86999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.71 10.45 71.24 0.74 0.04 16 2 C 0.01 0.22 7.22 43.05 0.31 0.53 16 3 C -0.18 -3.43 8.70 22.66 0.20 -3.23 16 4 C -0.06 -1.41 6.68 40.79 0.27 -1.13 16 5 C 0.58 16.36 7.62 86.59 0.66 17.02 16 6 O -0.58 -20.14 14.28 -4.12 -0.06 -20.20 16 7 N -0.58 -13.04 2.84 -850.99 -2.41 -15.45 16 8 C 0.06 0.77 8.50 127.77 1.09 1.86 16 9 C 0.10 2.30 5.03 86.37 0.43 2.73 16 10 C 0.10 3.37 3.30 30.59 0.10 3.47 16 11 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 12 O -0.56 -17.50 12.04 -148.98 -1.79 -19.30 16 13 C 0.12 4.81 5.92 86.38 0.51 5.32 16 14 N -0.74 -38.94 5.49 -343.46 -1.89 -40.82 16 15 C -0.25 -13.98 9.99 84.04 0.84 -13.14 16 16 H 0.08 4.26 7.83 -2.91 -0.02 4.23 16 17 C -0.08 -4.68 5.50 84.86 0.47 -4.22 16 18 N -0.97 -61.47 13.06 21.65 0.28 -61.19 16 19 Si 0.98 46.83 29.55 68.60 2.03 48.85 16 20 H -0.26 -11.69 7.11 99.48 0.71 -10.98 16 21 H -0.30 -14.22 7.11 99.48 0.71 -13.51 16 22 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 23 N -0.27 -7.16 3.75 -356.04 -1.33 -8.49 16 24 C 0.08 1.71 11.11 127.77 1.42 3.13 16 25 N -0.30 -7.65 11.90 -47.50 -0.57 -8.21 16 26 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 27 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 28 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 29 H 0.21 2.18 4.95 -2.91 -0.01 2.17 16 30 H 0.09 0.69 7.35 -2.39 -0.02 0.67 16 31 H 0.09 1.08 7.26 -2.38 -0.02 1.06 16 32 H 0.08 1.18 5.36 -2.39 -0.01 1.17 16 33 H 0.13 1.94 8.07 -2.39 -0.02 1.92 16 34 H 0.09 2.24 7.42 -2.39 -0.02 2.23 16 35 H 0.39 8.64 9.04 -74.06 -0.67 7.97 16 36 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 37 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 38 H 0.37 21.58 7.54 -92.71 -0.70 20.88 16 39 H 0.25 15.30 8.31 -92.71 -0.77 14.53 16 40 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 41 H 0.10 2.59 5.92 -2.39 -0.01 2.58 16 42 H 0.11 1.93 8.14 -2.39 -0.02 1.91 16 Total: -1.00 -80.88 348.45 0.99 -79.89 By element: Atomic # 1 Polarization: 32.86 SS G_CDS: -0.31 Total: 32.55 kcal Atomic # 6 Polarization: 5.34 SS G_CDS: 7.04 Total: 12.38 kcal Atomic # 7 Polarization: -128.25 SS G_CDS: -5.92 Total: -134.17 kcal Atomic # 8 Polarization: -37.64 SS G_CDS: -1.85 Total: -39.50 kcal Atomic # 14 Polarization: 46.83 SS G_CDS: 2.03 Total: 48.85 kcal Total: -80.88 0.99 -79.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486263572.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.771 kcal (2) G-P(sol) polarization free energy of solvation -80.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds