Wall clock time and date at job start Tue Mar 31 2020 04:06:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53007 * 109.47282 * 2 1 4 4 N 1.46498 * 109.47164 * 180.02562 * 3 2 1 5 5 C 1.34257 * 125.75491 * 125.27659 * 4 3 2 6 6 C 1.38040 * 107.41768 * 180.18078 * 5 4 3 7 7 C 1.47429 * 126.41932 * 179.87214 * 6 5 4 8 8 O 1.21602 * 119.99426 * 359.70532 * 7 6 5 9 9 N 1.34776 * 120.00364 * 179.71388 * 7 6 5 10 10 C 1.46500 * 119.99845 * 179.97438 * 9 7 6 11 11 C 1.53002 * 109.46766 * 179.97438 * 10 9 7 12 12 H 1.09000 * 109.47312 * 59.99784 * 11 10 9 13 13 O 1.42905 * 109.47079 * 299.99614 * 11 10 9 14 14 C 1.53005 * 109.46982 * 180.02562 * 11 10 9 15 15 N 1.46501 * 109.46915 * 185.00350 * 14 11 10 16 16 C 1.36938 * 119.99830 * 180.02562 * 15 14 11 17 17 H 1.08003 * 119.99873 * 359.97438 * 16 15 14 18 18 C 1.38811 * 120.00152 * 179.97438 * 16 15 14 19 19 N 1.31617 * 119.99814 * 0.02562 * 18 16 15 20 20 Si 1.86794 * 120.00083 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47168 * 90.00358 * 20 18 16 22 22 H 1.48504 * 109.46990 * 210.00082 * 20 18 16 23 23 H 1.48502 * 109.47288 * 329.99934 * 20 18 16 24 24 C 1.41295 * 107.16899 * 359.60280 * 6 5 4 25 25 N 1.30444 * 108.02401 * 0.24445 * 24 6 5 26 26 H 1.08997 * 109.47177 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.46894 * 299.99816 * 1 2 3 28 28 H 1.09003 * 109.47117 * 59.99933 * 1 2 3 29 29 H 1.09002 * 109.46894 * 240.00184 * 2 1 3 30 30 H 1.08999 * 109.47476 * 119.99751 * 2 1 3 31 31 H 1.08997 * 109.47017 * 59.99523 * 3 2 1 32 32 H 1.08999 * 109.46662 * 300.00250 * 3 2 1 33 33 H 1.08003 * 126.29323 * 0.02562 * 5 4 3 34 34 H 0.96995 * 119.99730 * 359.97438 * 9 7 6 35 35 H 1.09004 * 109.47137 * 59.99860 * 10 9 7 36 36 H 1.08992 * 109.47130 * 299.99285 * 10 9 7 37 37 H 0.96691 * 114.00079 * 299.99986 * 13 11 10 38 38 H 1.09000 * 109.46735 * 304.99472 * 14 11 10 39 39 H 1.08998 * 109.47316 * 64.99505 * 14 11 10 40 40 H 0.96997 * 120.00111 * 359.97438 * 15 14 11 41 41 H 0.97004 * 119.99907 * 179.97438 * 19 18 16 42 42 H 1.08005 * 125.98937 * 180.23722 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.2892 2.0719 -0.8903 6 6 5.5996 1.8176 -0.5388 7 6 6.8034 2.3056 -1.2361 8 8 6.6917 3.0007 -2.2276 9 7 8.0275 1.9812 -0.7749 10 6 9.2236 2.4658 -1.4683 11 6 10.4729 1.9586 -0.7450 12 1 10.4724 0.8686 -0.7397 13 8 10.4736 2.4415 0.6000 14 6 11.7221 2.4652 -1.4688 15 7 12.9152 1.8834 -0.8488 16 6 14.1584 2.1948 -1.3312 17 1 14.2593 2.8690 -2.1689 18 6 15.2890 1.6440 -0.7436 19 7 15.1660 0.8220 0.2770 20 14 16.9847 2.0683 -1.4020 21 1 17.5048 3.2661 -0.6950 22 1 17.9035 0.9233 -1.1777 23 1 16.8940 2.3525 -2.8568 24 6 5.5713 1.0072 0.6183 25 7 4.3230 0.7907 0.9290 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.6767 1.9564 0.8899 32 1 1.6767 1.9563 -0.8900 33 1 3.9559 2.6657 -1.7286 34 1 8.1165 1.4270 0.0162 35 1 9.2243 3.5558 -1.4731 36 1 9.2229 2.0978 -2.4942 37 1 10.4741 3.4057 0.6717 38 1 11.6782 2.1721 -2.5177 39 1 11.7683 3.5518 -1.3967 40 1 12.8246 1.2781 -0.0963 41 1 15.9560 0.4368 0.6874 42 1 6.4323 0.6325 1.1520 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001497064320.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:06:55 Heat of formation + Delta-G solvation = -9.918521 kcal Electronic energy + Delta-G solvation = -22691.611747 eV Core-core repulsion = 19094.436476 eV Total energy + Delta-G solvation = -3597.175271 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 296.164 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.64362 -39.30139 -37.50117 -35.84582 -34.31871 -33.94562 -32.11914 -31.30345 -30.61423 -29.00449 -27.00437 -25.32560 -23.15801 -22.77219 -22.04065 -21.38563 -20.93370 -19.96662 -18.25695 -17.13863 -16.62629 -16.22861 -15.94663 -15.87545 -15.24782 -15.14579 -14.80597 -14.48245 -14.37223 -13.78032 -13.65335 -13.58035 -13.09342 -12.96105 -12.84669 -12.60939 -12.50013 -12.27237 -11.96546 -11.80505 -11.53369 -11.17044 -10.94752 -10.80555 -10.58073 -10.16580 -9.97908 -9.89101 -9.78339 -9.46776 -9.14417 -8.89485 -8.80909 -6.92113 -5.74703 -3.04200 1.29763 1.96443 1.98228 3.26083 3.42340 3.45027 3.50046 3.51839 3.94348 4.25732 4.41582 4.48141 4.57156 4.63279 4.75001 4.75882 4.87341 4.91518 4.98237 5.05473 5.18731 5.29608 5.43263 5.46240 5.51544 5.57721 5.66847 5.67383 5.87889 5.99993 6.14032 6.22514 6.48356 6.49579 6.54584 6.70638 7.24101 7.59520 7.70103 7.97270 8.30202 8.43508 9.55136 10.11984 10.47680 11.47675 Molecular weight = 296.16amu Principal moments of inertia in cm(-1) A = 0.047161 B = 0.002083 C = 0.002031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 593.566442 B =13439.009675 C =13785.796116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.137 4.137 3 C 0.129 3.871 4 N -0.362 5.362 5 C 0.126 3.874 6 C -0.291 4.291 7 C 0.593 3.407 8 O -0.556 6.556 9 N -0.717 5.717 10 C 0.092 3.908 11 C 0.089 3.911 12 H 0.105 0.895 13 O -0.553 6.553 14 C 0.127 3.873 15 N -0.726 5.726 16 C -0.244 4.244 17 H 0.070 0.930 18 C -0.013 4.013 19 N -0.930 5.930 20 Si 0.908 3.092 21 H -0.290 1.290 22 H -0.291 1.291 23 H -0.282 1.282 24 C 0.083 3.917 25 N -0.295 5.295 26 H 0.063 0.937 27 H 0.059 0.941 28 H 0.057 0.943 29 H 0.069 0.931 30 H 0.080 0.920 31 H 0.089 0.911 32 H 0.099 0.901 33 H 0.187 0.813 34 H 0.404 0.596 35 H 0.071 0.929 36 H 0.077 0.923 37 H 0.373 0.627 38 H 0.029 0.971 39 H 0.023 0.977 40 H 0.388 0.612 41 H 0.255 0.745 42 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.098 0.632 -0.054 30.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.175 4.175 3 C 0.009 3.991 4 N -0.141 5.141 5 C -0.026 4.026 6 C -0.306 4.306 7 C 0.380 3.620 8 O -0.436 6.436 9 N -0.368 5.368 10 C -0.032 4.032 11 C 0.029 3.971 12 H 0.123 0.877 13 O -0.358 6.358 14 C -0.002 4.002 15 N -0.371 5.371 16 C -0.375 4.375 17 H 0.088 0.912 18 C -0.209 4.209 19 N -0.578 5.578 20 Si 0.739 3.261 21 H -0.217 1.217 22 H -0.218 1.218 23 H -0.208 1.208 24 C -0.105 4.105 25 N -0.115 5.115 26 H 0.082 0.918 27 H 0.078 0.922 28 H 0.077 0.923 29 H 0.088 0.912 30 H 0.098 0.902 31 H 0.107 0.893 32 H 0.117 0.883 33 H 0.204 0.796 34 H 0.239 0.761 35 H 0.089 0.911 36 H 0.096 0.904 37 H 0.220 0.780 38 H 0.047 0.953 39 H 0.041 0.959 40 H 0.223 0.777 41 H 0.065 0.935 42 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -30.985 -0.027 0.094 30.985 hybrid contribution 1.603 0.763 -0.479 1.839 sum -29.382 0.735 -0.385 29.394 Atomic orbital electron populations 1.21713 0.94238 1.02697 1.02192 1.21810 0.96545 0.95112 1.04040 1.21946 0.73425 0.99468 1.04302 1.48613 1.06931 1.37865 1.20705 1.22976 0.90146 0.95075 0.94370 1.20281 0.93461 1.13430 1.03453 1.17228 0.82270 0.79340 0.83142 1.90765 1.86988 1.39283 1.26544 1.45660 1.05039 1.54122 1.31945 1.22077 0.84162 0.99935 0.97058 1.22408 0.92300 0.99903 0.82508 0.87705 1.86572 1.96840 1.26626 1.25730 1.21206 0.86822 0.96403 0.95749 1.42237 1.00207 1.55718 1.38893 1.19227 0.83651 1.22738 1.11852 0.91200 1.24757 0.97876 0.99872 0.98380 1.69678 1.28487 1.34737 1.24929 0.86178 0.84398 0.77317 0.78202 1.21705 1.21751 1.20759 1.24149 0.95409 0.96016 0.94911 1.77157 1.01792 1.19222 1.13322 0.91802 0.92209 0.92345 0.91244 0.90174 0.89267 0.88267 0.79609 0.76110 0.91074 0.90428 0.77985 0.95350 0.95904 0.77728 0.93492 0.79165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.49 9.91 37.16 0.37 -0.12 16 2 C -0.14 -0.69 6.11 -26.73 -0.16 -0.85 16 3 C 0.13 0.65 6.49 -4.04 -0.03 0.63 16 4 N -0.36 -3.14 3.65 -60.81 -0.22 -3.36 16 5 C 0.13 1.18 11.25 -16.56 -0.19 0.99 16 6 C -0.29 -3.25 6.13 -105.07 -0.64 -3.90 16 7 C 0.59 7.94 7.81 -12.52 -0.10 7.84 16 8 O -0.56 -9.26 16.90 5.28 0.09 -9.17 16 9 N -0.72 -8.69 5.44 -61.38 -0.33 -9.02 16 10 C 0.09 1.22 5.34 -4.04 -0.02 1.20 16 11 C 0.09 1.36 3.09 -26.73 -0.08 1.27 16 12 H 0.11 1.66 8.14 -51.93 -0.42 1.24 16 13 O -0.55 -8.62 13.03 -35.23 -0.46 -9.08 16 14 C 0.13 2.46 5.90 -4.04 -0.02 2.43 16 15 N -0.73 -18.40 5.55 -59.91 -0.33 -18.73 16 16 C -0.24 -6.87 9.99 -15.06 -0.15 -7.02 16 17 H 0.07 1.91 7.83 -52.48 -0.41 1.50 16 18 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 19 N -0.93 -28.44 13.06 55.49 0.72 -27.72 16 20 Si 0.91 22.54 29.55 -169.99 -5.02 17.52 16 21 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 22 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 23 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 24 C 0.08 0.84 11.50 -16.98 -0.20 0.64 16 25 N -0.30 -3.14 12.33 30.86 0.38 -2.76 16 26 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 27 H 0.06 0.17 8.14 -51.93 -0.42 -0.25 16 28 H 0.06 0.15 8.14 -51.93 -0.42 -0.28 16 29 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.09 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.10 0.26 8.06 -51.93 -0.42 -0.15 16 33 H 0.19 1.32 8.06 -52.48 -0.42 0.90 16 34 H 0.40 4.24 7.30 -40.82 -0.30 3.94 16 35 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.37 4.86 9.04 45.56 0.41 5.27 16 38 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.39 10.53 7.67 -40.82 -0.31 10.21 16 41 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 42 H 0.19 1.44 7.50 -52.48 -0.39 1.04 16 LS Contribution 363.18 15.07 5.47 5.47 Total: -1.00 -35.79 363.18 -6.65 -42.45 By element: Atomic # 1 Polarization: 17.38 SS G_CDS: -5.63 Total: 11.75 kcal Atomic # 6 Polarization: 3.97 SS G_CDS: -1.32 Total: 2.65 kcal Atomic # 7 Polarization: -61.81 SS G_CDS: 0.22 Total: -61.59 kcal Atomic # 8 Polarization: -17.88 SS G_CDS: -0.37 Total: -18.25 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.02 Total: 17.52 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -35.79 -6.65 -42.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497064320.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.528 kcal (2) G-P(sol) polarization free energy of solvation -35.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds