Wall clock time and date at job start Tue Mar 31 2020 03:47:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86797 * 120.00315 * 2 1 4 4 H 1.48498 * 109.47133 * 270.00003 * 3 2 1 5 5 H 1.48501 * 109.47142 * 30.00739 * 3 2 1 6 6 H 1.48502 * 109.46812 * 150.00316 * 3 2 1 7 7 C 1.37887 * 119.99569 * 180.02562 * 2 1 3 8 8 H 1.07990 * 119.99635 * 179.97438 * 7 2 1 9 9 C 1.50693 * 119.99705 * 359.97438 * 7 2 1 10 10 N 1.46901 * 109.46918 * 185.09288 * 9 7 2 11 11 C 1.46908 * 110.99635 * 295.08246 * 10 9 7 12 12 C 1.53241 * 109.33844 * 187.25443 * 11 10 9 13 13 N 1.47086 * 108.51982 * 306.16937 * 12 11 10 14 14 C 1.34776 * 120.87961 * 231.18511 * 13 12 11 15 15 O 1.21273 * 120.00152 * 355.56317 * 14 13 12 16 16 C 1.50707 * 119.99577 * 175.56301 * 14 13 12 17 17 N 1.46494 * 115.54999 * 45.20987 * 16 14 13 18 18 C 1.34781 * 119.99693 * 66.45212 * 17 16 14 19 19 N 1.34783 * 119.99646 * 173.58300 * 18 17 16 20 20 O 1.21587 * 120.00208 * 353.58786 * 18 17 16 21 21 C 1.52997 * 117.49320 * 190.88187 * 16 14 13 22 22 C 1.52998 * 117.49533 * 259.54037 * 16 14 13 23 23 C 1.47078 * 118.23542 * 51.46055 * 13 12 11 24 24 C 1.46898 * 111.00457 * 59.38478 * 10 9 7 25 25 H 0.97007 * 119.99670 * 359.97438 * 1 2 3 26 26 H 1.09002 * 109.47453 * 65.09059 * 9 7 2 27 27 H 1.09004 * 109.47280 * 305.08825 * 9 7 2 28 28 H 1.08997 * 109.49053 * 67.29680 * 11 10 9 29 29 H 1.08998 * 109.49603 * 307.21280 * 11 10 9 30 30 H 1.08995 * 109.62708 * 186.46392 * 12 11 10 31 31 H 1.08997 * 109.78878 * 65.97737 * 12 11 10 32 32 H 0.97003 * 120.00271 * 246.45163 * 17 16 14 33 33 H 0.96997 * 119.99702 * 0.02562 * 19 18 17 34 34 H 0.96996 * 119.99629 * 179.72167 * 19 18 17 35 35 H 1.09004 * 117.49741 * 214.99897 * 21 16 14 36 36 H 1.08997 * 117.50501 * 0.02562 * 21 16 14 37 37 H 1.08997 * 117.50442 * 359.97438 * 22 16 14 38 38 H 1.09001 * 117.49565 * 144.97811 * 22 16 14 39 39 H 1.09008 * 109.63183 * 68.25208 * 23 13 12 40 40 H 1.09003 * 109.63131 * 188.82589 * 23 13 12 41 41 H 1.08999 * 109.49327 * 292.71279 * 24 10 9 42 42 H 1.08997 * 109.49090 * 52.75659 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4468 2.6526 0.7002 6 1 3.5468 1.4399 0.7000 7 6 2.0045 -1.1942 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2508 -2.4991 -0.0005 10 7 2.2006 -3.6131 0.1218 11 6 3.0773 -3.6889 -1.0546 12 6 3.9254 -4.9627 -0.9742 13 7 4.6208 -4.9800 0.3218 14 6 5.9517 -5.1809 0.3901 15 8 6.5797 -5.4305 -0.6169 16 6 6.6595 -5.0954 1.7179 17 7 6.0015 -5.7854 2.8302 18 6 5.8992 -7.1293 2.8235 19 7 5.4117 -7.7733 3.9025 20 8 6.2468 -7.7606 1.8443 21 6 8.1893 -5.0780 1.7030 22 6 7.4122 -3.8017 2.0351 23 6 3.8241 -4.7783 1.5416 24 6 2.9809 -3.5060 1.3618 25 1 -0.4850 0.8401 0.0004 26 1 0.6939 -2.5972 -0.9324 27 1 0.5579 -2.5186 0.8407 28 1 3.7314 -2.8173 -1.0775 29 1 2.4704 -3.7127 -1.9596 30 1 4.6569 -4.9672 -1.7822 31 1 3.2832 -5.8395 -1.0568 32 1 5.6395 -5.2750 3.5714 33 1 5.1342 -7.2695 4.6836 34 1 5.3343 -8.7401 3.8962 35 1 8.7063 -5.5800 2.5209 36 1 8.6838 -5.1280 0.7330 37 1 7.3959 -3.0126 1.2834 38 1 7.4175 -3.4638 3.0714 39 1 3.1697 -5.6359 1.6977 40 1 4.4886 -4.6608 2.3977 41 1 3.6363 -2.6369 1.3052 42 1 2.3041 -3.3964 2.2091 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001557981194.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:47:38 Heat of formation + Delta-G solvation = -11.596886 kcal Electronic energy + Delta-G solvation = -25295.026907 eV Core-core repulsion = 21697.778856 eV Total energy + Delta-G solvation = -3597.248051 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 296.164 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.85130 -39.27157 -37.80428 -36.54851 -34.49609 -33.96894 -32.48551 -32.16479 -30.64033 -28.25276 -25.65976 -24.20308 -23.05060 -22.80399 -22.30106 -21.42370 -20.07451 -18.84615 -18.54837 -17.67143 -16.71445 -16.33144 -16.05201 -15.36470 -14.99691 -14.86315 -14.69240 -14.40600 -14.31983 -14.19376 -13.78328 -13.37984 -13.13359 -12.65133 -12.18218 -11.88830 -11.72924 -11.30704 -11.14889 -11.13609 -11.03873 -10.83171 -10.69801 -10.62806 -10.38107 -10.28601 -10.00781 -9.93687 -9.87972 -9.70740 -8.91425 -8.50325 -8.35266 -7.28081 -6.10012 -4.19643 2.36935 2.72988 2.98929 3.16377 3.22009 3.29421 3.31168 3.72210 4.15805 4.34135 4.46100 4.61572 4.67583 4.89435 5.18924 5.20544 5.37834 5.38961 5.50289 5.61042 5.71634 5.75544 5.92409 5.93043 6.00381 6.13598 6.20345 6.39003 6.39698 6.58144 6.67739 6.69039 6.80889 7.17285 7.44107 7.63989 7.70314 7.82261 7.94391 8.16375 8.20615 8.37959 8.45107 8.90286 9.47745 10.95025 Molecular weight = 296.16amu Principal moments of inertia in cm(-1) A = 0.020061 B = 0.004330 C = 0.004169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1395.377277 B = 6464.292175 C = 6714.318527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.066 3.934 3 Si 0.889 3.111 4 H -0.280 1.280 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.551 4.551 8 H 0.056 0.944 9 C 0.187 3.813 10 N -0.541 5.541 11 C 0.051 3.949 12 C 0.116 3.884 13 N -0.595 5.595 14 C 0.555 3.445 15 O -0.538 6.538 16 C 0.089 3.911 17 N -0.710 5.710 18 C 0.705 3.295 19 N -0.866 5.866 20 O -0.574 6.574 21 C -0.140 4.140 22 C -0.150 4.150 23 C 0.108 3.892 24 C 0.051 3.949 25 H 0.263 0.737 26 H 0.029 0.971 27 H 0.036 0.964 28 H 0.041 0.959 29 H 0.078 0.922 30 H 0.086 0.914 31 H 0.067 0.933 32 H 0.402 0.598 33 H 0.397 0.603 34 H 0.415 0.585 35 H 0.103 0.897 36 H 0.114 0.886 37 H 0.112 0.888 38 H 0.110 0.890 39 H 0.065 0.935 40 H 0.083 0.917 41 H 0.044 0.956 42 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.057 -10.214 10.720 18.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.136 4.136 3 Si 0.716 3.284 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.590 4.590 8 H 0.074 0.926 9 C 0.062 3.938 10 N -0.265 5.265 11 C -0.079 4.079 12 C -0.006 4.006 13 N -0.327 5.327 14 C 0.340 3.660 15 O -0.415 6.415 16 C -0.003 4.003 17 N -0.370 5.370 18 C 0.403 3.597 19 N -0.435 5.435 20 O -0.449 6.449 21 C -0.179 4.179 22 C -0.188 4.188 23 C -0.015 4.015 24 C -0.079 4.079 25 H 0.073 0.927 26 H 0.047 0.953 27 H 0.054 0.946 28 H 0.060 0.940 29 H 0.097 0.903 30 H 0.104 0.896 31 H 0.085 0.915 32 H 0.239 0.761 33 H 0.224 0.776 34 H 0.248 0.752 35 H 0.122 0.878 36 H 0.133 0.867 37 H 0.130 0.870 38 H 0.129 0.871 39 H 0.083 0.917 40 H 0.101 0.899 41 H 0.062 0.938 42 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 11.291 -11.074 9.278 18.336 hybrid contribution 0.254 1.892 0.876 2.101 sum 11.545 -9.182 10.154 17.908 Atomic orbital electron populations 1.69940 1.06012 1.26907 1.49930 1.24954 0.94749 0.99133 0.94815 0.86653 0.79838 0.83623 0.78249 1.20584 1.21103 1.20013 1.21721 0.93233 0.92075 1.51983 0.92623 1.19769 0.90724 0.85345 0.97961 1.62480 1.16973 1.46560 1.00472 1.22256 0.95189 0.95242 0.95165 1.21836 0.95204 0.98853 0.84743 1.47966 1.06249 1.70056 1.08455 1.19329 0.81856 0.76200 0.88588 1.90660 1.65814 1.48685 1.36298 1.20302 0.92653 1.00783 0.86514 1.44610 1.63454 1.05035 1.23883 1.15960 0.78489 0.81720 0.83507 1.42956 1.71710 1.11432 1.17385 1.91049 1.54821 1.65839 1.33234 1.23319 0.91218 0.98772 1.04597 1.23422 1.00514 0.90917 1.03947 1.22304 0.93848 0.98872 0.86512 1.22331 0.96134 0.94780 0.94652 0.92744 0.95310 0.94613 0.94026 0.90348 0.89579 0.91454 0.76064 0.77577 0.75228 0.87821 0.86737 0.86964 0.87132 0.91683 0.89884 0.93751 0.90544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.41 13.29 55.43 0.74 -24.67 16 2 C 0.07 1.81 5.46 -17.82 -0.10 1.71 16 3 Si 0.89 20.84 29.54 -169.99 -5.02 15.82 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 6 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 7 C -0.55 -14.55 7.75 -34.44 -0.27 -14.82 16 8 H 0.06 1.47 5.88 -52.49 -0.31 1.16 16 9 C 0.19 4.62 5.11 -4.98 -0.03 4.60 16 10 N -0.54 -11.06 4.83 -235.47 -1.14 -12.20 16 11 C 0.05 0.98 5.24 -3.69 -0.02 0.96 16 12 C 0.12 2.03 6.58 -3.60 -0.02 2.01 16 13 N -0.60 -10.01 3.00 -172.18 -0.52 -10.52 16 14 C 0.55 9.59 6.63 -10.98 -0.07 9.52 16 15 O -0.54 -11.04 15.79 5.56 0.09 -10.96 16 16 C 0.09 1.15 1.40 -132.97 -0.19 0.96 16 17 N -0.71 -7.13 3.35 -53.50 -0.18 -7.31 16 18 C 0.70 8.43 8.73 -86.91 -0.76 7.67 16 19 N -0.87 -6.03 8.88 27.64 0.25 -5.79 16 20 O -0.57 -10.11 16.68 5.29 0.09 -10.02 16 21 C -0.14 -1.60 9.97 -26.69 -0.27 -1.87 16 22 C -0.15 -1.49 10.16 -26.69 -0.27 -1.77 16 23 C 0.11 1.58 6.08 -3.37 -0.02 1.56 16 24 C 0.05 0.90 5.17 -3.47 -0.02 0.88 16 25 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 26 H 0.03 0.76 8.07 -51.93 -0.42 0.34 16 27 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 28 H 0.04 0.88 6.92 -51.93 -0.36 0.52 16 29 H 0.08 1.49 8.05 -51.93 -0.42 1.08 16 30 H 0.09 1.53 7.09 -51.93 -0.37 1.16 16 31 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 32 H 0.40 2.62 7.82 -40.82 -0.32 2.30 16 33 H 0.40 1.40 8.85 -40.82 -0.36 1.04 16 34 H 0.42 2.60 8.93 -40.82 -0.36 2.23 16 35 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.11 1.47 7.71 -51.93 -0.40 1.07 16 37 H 0.11 1.21 8.14 -51.93 -0.42 0.79 16 38 H 0.11 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.06 0.96 8.14 -51.92 -0.42 0.54 16 40 H 0.08 0.96 4.16 -51.93 -0.22 0.74 16 41 H 0.04 0.87 6.79 -51.93 -0.35 0.52 16 42 H 0.08 1.32 8.11 -51.93 -0.42 0.90 16 LS Contribution 340.53 15.07 5.13 5.13 Total: -1.00 -35.48 340.53 -8.57 -44.06 By element: Atomic # 1 Polarization: 11.02 SS G_CDS: -5.98 Total: 5.04 kcal Atomic # 6 Polarization: 13.45 SS G_CDS: -2.03 Total: 11.42 kcal Atomic # 7 Polarization: -59.63 SS G_CDS: -0.85 Total: -60.49 kcal Atomic # 8 Polarization: -21.16 SS G_CDS: 0.18 Total: -20.98 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -35.48 -8.57 -44.06 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001557981194.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.459 kcal (2) G-P(sol) polarization free energy of solvation -35.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds