Wall clock time and date at job start Tue Mar 31 2020 03:55:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 120.00041 * 2 1 4 4 H 1.48503 * 109.46985 * 269.99904 * 3 2 1 5 5 H 1.48493 * 109.47257 * 30.00042 * 3 2 1 6 6 H 1.48502 * 109.47059 * 149.99873 * 3 2 1 7 7 C 1.37878 * 119.99626 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00348 * 0.02562 * 7 2 1 9 9 C 1.50707 * 119.99593 * 180.02562 * 7 2 1 10 10 H 1.09006 * 109.46889 * 299.99799 * 9 7 2 11 11 O 1.42895 * 109.47224 * 60.00102 * 9 7 2 12 12 C 1.53000 * 109.46937 * 180.02562 * 9 7 2 13 13 N 1.46898 * 109.47225 * 179.97438 * 12 9 7 14 14 C 1.46846 * 111.00215 * 293.95374 * 13 12 9 15 15 C 1.53034 * 109.52438 * 174.15953 * 14 13 12 16 16 C 1.53118 * 109.27810 * 59.17873 * 15 14 13 17 17 C 1.53116 * 109.15988 * 302.34374 * 16 15 14 18 18 H 1.09001 * 109.50671 * 297.67572 * 17 16 15 19 19 N 1.46500 * 109.50331 * 177.59708 * 17 16 15 20 20 C 1.35312 * 125.86582 * 324.99854 * 19 17 16 21 21 C 1.35359 * 106.17441 * 179.77310 * 20 19 17 22 22 C 1.50700 * 126.74967 * 180.21133 * 21 20 19 23 23 O 1.42895 * 109.47326 * 359.97438 * 22 21 20 24 24 N 1.33772 * 106.49554 * 0.22938 * 21 20 19 25 25 N 1.28640 * 108.88426 * 359.97438 * 24 21 20 26 26 C 1.46847 * 110.99982 * 169.74009 * 13 12 9 27 27 H 0.97003 * 120.00013 * 0.02562 * 1 2 3 28 28 H 0.96699 * 113.99978 * 59.99681 * 11 9 7 29 29 H 1.08996 * 109.47203 * 59.99595 * 12 9 7 30 30 H 1.09003 * 109.47003 * 300.00309 * 12 9 7 31 31 H 1.09004 * 109.45951 * 54.14548 * 14 13 12 32 32 H 1.08997 * 109.45081 * 294.17087 * 14 13 12 33 33 H 1.09003 * 109.50128 * 299.23620 * 15 14 13 34 34 H 1.08996 * 109.50219 * 179.12277 * 15 14 13 35 35 H 1.09000 * 109.52085 * 182.44665 * 16 15 14 36 36 H 1.08992 * 109.57759 * 62.28479 * 16 15 14 37 37 H 1.08002 * 126.91567 * 0.04325 * 20 19 17 38 38 H 1.08993 * 109.46933 * 120.00397 * 22 21 20 39 39 H 1.09002 * 109.46854 * 239.99787 * 22 21 20 40 40 H 0.96697 * 114.00202 * 180.02562 * 23 22 21 41 41 H 1.08999 * 109.45781 * 65.82643 * 26 13 12 42 42 H 1.08999 * 109.46391 * 305.85804 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0044 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 1 3.8752 -0.6805 -0.8889 11 8 3.9874 -0.5202 1.1679 12 6 4.0215 -2.6366 0.0010 13 7 5.4905 -2.6367 0.0009 14 6 6.0167 -2.0800 -1.2519 15 6 7.5396 -1.9609 -1.1587 16 6 8.1402 -3.3457 -0.9017 17 6 7.5395 -3.9234 0.3828 18 1 7.8034 -3.2860 1.2268 19 7 8.0661 -5.2723 0.6054 20 6 8.3620 -6.1766 -0.3568 21 6 8.8202 -7.2757 0.2869 22 6 9.2860 -8.5620 -0.3451 23 8 9.1744 -8.4623 -1.7662 24 7 8.7779 -6.9955 1.5942 25 7 8.3241 -5.8019 1.7498 26 6 6.0167 -3.9857 0.2450 27 1 -0.4850 0.8401 -0.0004 28 1 3.7017 -0.9236 1.9990 29 1 3.6584 -3.1503 -0.8892 30 1 3.6577 -3.1506 0.8907 31 1 5.5849 -1.0935 -1.4206 32 1 5.7539 -2.7380 -2.0801 33 1 7.8028 -1.2922 -0.3391 34 1 7.9313 -1.5623 -2.0945 35 1 9.2211 -3.2591 -0.7913 36 1 7.9111 -4.0044 -1.7393 37 1 8.2580 -6.0460 -1.4238 38 1 10.3257 -8.7444 -0.0738 39 1 8.6678 -9.3863 0.0106 40 1 9.4573 -9.2566 -2.2397 41 1 5.7538 -4.6346 -0.5904 42 1 5.5848 -4.3834 1.1634 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001654578122.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:55:27 Heat of formation + Delta-G solvation = 9.518406 kcal Electronic energy + Delta-G solvation = -24304.776385 eV Core-core repulsion = 20708.443962 eV Total energy + Delta-G solvation = -3596.332423 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 296.164 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.43793 -39.26559 -37.29663 -36.35856 -34.54638 -32.74351 -32.26904 -31.60196 -30.14216 -28.59595 -26.92568 -25.56983 -24.31035 -23.05070 -22.02541 -21.38064 -20.30641 -19.75305 -17.85773 -17.46852 -17.11210 -16.61211 -15.57520 -15.26850 -15.08019 -14.95384 -14.81286 -14.70530 -14.53703 -14.00249 -13.81231 -13.42367 -13.39282 -12.80489 -12.70725 -12.40429 -11.87515 -11.79338 -11.63292 -11.35632 -11.17194 -11.02177 -10.94876 -10.88585 -10.77065 -10.68647 -10.42582 -10.06597 -9.89512 -9.23680 -9.07030 -8.66367 -8.33661 -8.01517 -6.16997 -4.29056 1.49439 2.15216 2.33484 3.35553 3.46095 3.52327 3.72792 4.01738 4.13839 4.45014 4.50079 4.52902 4.66869 4.73848 4.85906 4.97508 5.02596 5.10411 5.18035 5.23228 5.28847 5.38805 5.45160 5.51227 5.62540 5.67937 5.74598 5.83691 5.88251 5.94100 6.08335 6.10300 6.22728 6.47340 6.50608 7.11630 7.18110 7.18247 7.38671 7.59070 8.24732 8.38574 8.79023 9.05849 9.47365 10.93615 Molecular weight = 296.16amu Principal moments of inertia in cm(-1) A = 0.029873 B = 0.003178 C = 0.003118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.087203 B = 8809.381267 C = 8977.367749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.084 3.916 3 Si 0.871 3.129 4 H -0.288 1.288 5 H -0.296 1.296 6 H -0.214 1.214 7 C -0.568 4.568 8 H 0.071 0.929 9 C 0.203 3.797 10 H 0.053 0.947 11 O -0.570 6.570 12 C 0.042 3.958 13 N -0.523 5.523 14 C 0.047 3.953 15 C -0.110 4.110 16 C -0.127 4.127 17 C 0.146 3.854 18 H 0.125 0.875 19 N -0.281 5.281 20 C -0.019 4.019 21 C -0.039 4.039 22 C 0.170 3.830 23 O -0.572 6.572 24 N -0.267 5.267 25 N -0.078 5.078 26 C 0.050 3.950 27 H 0.265 0.735 28 H 0.355 0.645 29 H 0.035 0.965 30 H 0.072 0.928 31 H 0.091 0.909 32 H 0.032 0.968 33 H 0.080 0.920 34 H 0.077 0.923 35 H 0.075 0.925 36 H 0.072 0.928 37 H 0.190 0.810 38 H 0.066 0.934 39 H 0.067 0.933 40 H 0.389 0.611 41 H 0.037 0.963 42 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.660 -12.548 -4.551 23.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.121 4.121 3 Si 0.697 3.303 4 H -0.215 1.215 5 H -0.222 1.222 6 H -0.137 1.137 7 C -0.606 4.606 8 H 0.089 0.911 9 C 0.145 3.855 10 H 0.071 0.929 11 O -0.375 6.375 12 C -0.085 4.085 13 N -0.248 5.248 14 C -0.081 4.081 15 C -0.149 4.149 16 C -0.166 4.166 17 C 0.045 3.955 18 H 0.142 0.858 19 N -0.075 5.075 20 C -0.171 4.171 21 C -0.177 4.177 22 C 0.090 3.910 23 O -0.377 6.377 24 N -0.135 5.135 25 N -0.057 5.057 26 C -0.080 4.080 27 H 0.075 0.925 28 H 0.201 0.799 29 H 0.053 0.947 30 H 0.090 0.910 31 H 0.109 0.891 32 H 0.050 0.950 33 H 0.098 0.902 34 H 0.096 0.904 35 H 0.093 0.907 36 H 0.091 0.909 37 H 0.207 0.793 38 H 0.084 0.916 39 H 0.085 0.915 40 H 0.237 0.763 41 H 0.055 0.945 42 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 19.706 -10.944 -2.922 22.729 hybrid contribution -0.327 -0.769 -1.699 1.894 sum 19.378 -11.713 -4.621 23.110 Atomic orbital electron populations 1.69956 1.06826 1.27545 1.48620 1.24988 0.94613 1.00019 0.92444 0.87027 0.83226 0.81718 0.78315 1.21506 1.22236 1.13658 1.21494 0.89829 0.94839 1.54430 0.91118 1.19706 0.93102 0.86546 0.86102 0.92899 1.86654 1.77888 1.56907 1.16085 1.22880 0.83298 1.01631 1.00697 1.61888 1.09851 1.18370 1.34648 1.22228 0.94385 1.01380 0.90128 1.21552 0.95254 0.95111 1.02969 1.21990 1.00724 0.98477 0.95392 1.21849 0.94995 0.76982 1.01713 0.85761 1.47618 1.41136 1.13872 1.04834 1.23254 1.05931 0.90027 0.97847 1.21606 1.07670 0.97644 0.90818 1.19847 0.99660 0.91319 0.80145 1.86370 1.89868 1.43759 1.17745 1.74994 1.16258 1.06466 1.15809 1.78340 1.16418 1.03812 1.07155 1.22330 0.91567 0.92116 1.01979 0.92524 0.79873 0.94665 0.90964 0.89106 0.94982 0.90156 0.90423 0.90670 0.90930 0.79302 0.91592 0.91543 0.76307 0.94489 0.89809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.89 13.96 55.43 0.77 -26.12 16 2 C 0.08 2.37 5.47 -17.82 -0.10 2.27 16 3 Si 0.87 21.31 26.99 -169.99 -4.59 16.73 16 4 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 5 H -0.30 -7.34 7.11 56.52 0.40 -6.94 16 6 H -0.21 -5.11 5.31 56.52 0.30 -4.81 16 7 C -0.57 -15.30 9.34 -34.44 -0.32 -15.62 16 8 H 0.07 2.06 7.99 -52.49 -0.42 1.65 16 9 C 0.20 4.49 2.19 -27.88 -0.06 4.43 16 10 H 0.05 1.20 5.86 -51.93 -0.30 0.89 16 11 O -0.57 -12.46 10.01 -35.23 -0.35 -12.81 16 12 C 0.04 0.77 4.56 -3.82 -0.02 0.75 16 13 N -0.52 -7.97 4.52 -234.67 -1.06 -9.04 16 14 C 0.05 0.63 5.29 -3.84 -0.02 0.61 16 15 C -0.11 -1.14 6.09 -26.65 -0.16 -1.31 16 16 C -0.13 -1.20 4.97 -26.61 -0.13 -1.34 16 17 C 0.15 1.69 3.29 -67.85 -0.22 1.47 16 18 H 0.12 1.50 8.14 -51.93 -0.42 1.08 16 19 N -0.28 -3.58 3.26 -54.68 -0.18 -3.75 16 20 C -0.02 -0.22 10.03 -17.04 -0.17 -0.40 16 21 C -0.04 -0.48 7.22 -82.77 -0.60 -1.07 16 22 C 0.17 1.37 7.67 36.01 0.28 1.65 16 23 O -0.57 -4.07 13.04 -35.23 -0.46 -4.52 16 24 N -0.27 -3.93 12.41 33.29 0.41 -3.52 16 25 N -0.08 -1.18 13.17 60.35 0.79 -0.39 16 26 C 0.05 0.66 5.07 -3.83 -0.02 0.64 16 27 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 28 H 0.36 7.05 9.04 45.56 0.41 7.46 16 29 H 0.04 0.66 8.12 -51.93 -0.42 0.24 16 30 H 0.07 1.34 7.98 -51.93 -0.41 0.93 16 31 H 0.09 1.39 6.22 -51.93 -0.32 1.07 16 32 H 0.03 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.07 0.64 7.06 -51.93 -0.37 0.27 16 37 H 0.19 1.80 7.12 -52.49 -0.37 1.43 16 38 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 40 H 0.39 0.78 9.12 45.56 0.42 1.19 16 41 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.08 1.20 8.01 -51.93 -0.42 0.78 16 LS Contribution 338.03 15.07 5.09 5.09 Total: -1.00 -33.45 338.03 -5.94 -39.39 By element: Atomic # 1 Polarization: 11.67 SS G_CDS: -4.83 Total: 6.84 kcal Atomic # 6 Polarization: -6.35 SS G_CDS: -1.55 Total: -7.90 kcal Atomic # 7 Polarization: -43.56 SS G_CDS: 0.74 Total: -42.82 kcal Atomic # 8 Polarization: -16.52 SS G_CDS: -0.81 Total: -17.33 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -4.59 Total: 16.73 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -33.45 -5.94 -39.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001654578122.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.911 kcal (2) G-P(sol) polarization free energy of solvation -33.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.393 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds