Wall clock time and date at job start Tue Mar 31 2020 03:57:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.34670 * 126.59441 * 2 1 4 4 N 1.34126 * 108.02306 * 180.28629 * 3 2 1 5 5 C 1.30507 * 109.25437 * 359.73190 * 4 3 2 6 6 N 1.35051 * 108.69789 * 0.02562 * 5 4 3 7 7 C 1.46500 * 126.39290 * 180.02562 * 6 5 4 8 8 C 1.50708 * 109.46487 * 265.02103 * 7 6 5 9 9 O 1.21277 * 120.00423 * 0.02562 * 8 7 6 10 10 N 1.34775 * 119.99399 * 180.02562 * 8 7 6 11 11 C 1.46503 * 120.00474 * 359.97438 * 10 8 7 12 12 C 1.46504 * 119.99567 * 179.97438 * 10 8 7 13 13 C 1.53005 * 109.47028 * 269.99510 * 12 10 8 14 14 H 1.09005 * 109.47310 * 305.00257 * 13 12 10 15 15 O 1.42903 * 109.46806 * 64.99877 * 13 12 10 16 16 C 1.52992 * 109.47277 * 185.00044 * 13 12 10 17 17 N 1.46499 * 109.47267 * 180.02562 * 16 13 12 18 18 C 1.36935 * 119.99938 * 179.97438 * 17 16 13 19 19 H 1.08000 * 120.00518 * 359.72965 * 18 17 16 20 20 C 1.38817 * 119.99990 * 179.97438 * 18 17 16 21 21 N 1.31617 * 119.99869 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99909 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47028 * 60.00888 * 22 20 18 24 24 H 1.48503 * 109.46851 * 180.02562 * 22 20 18 25 25 H 1.48492 * 109.47412 * 300.00497 * 22 20 18 26 26 H 1.09004 * 109.46359 * 270.16324 * 1 2 3 27 27 H 1.08997 * 109.47041 * 30.15762 * 1 2 3 28 28 H 1.08997 * 109.47464 * 150.16443 * 1 2 3 29 29 H 1.08001 * 125.98694 * 0.05498 * 3 2 1 30 30 H 1.07998 * 125.64942 * 179.97438 * 5 4 3 31 31 H 1.08994 * 109.47328 * 145.02212 * 7 6 5 32 32 H 1.08993 * 109.47261 * 25.01682 * 7 6 5 33 33 H 1.08997 * 109.47032 * 270.00001 * 11 10 8 34 34 H 1.08997 * 109.46896 * 30.00104 * 11 10 8 35 35 H 1.08998 * 109.46684 * 150.00329 * 11 10 8 36 36 H 1.09005 * 109.47213 * 150.00096 * 12 10 8 37 37 H 1.08996 * 109.47319 * 29.99428 * 12 10 8 38 38 H 0.96702 * 113.99305 * 60.00499 * 15 13 12 39 39 H 1.09004 * 109.47330 * 60.00123 * 16 13 12 40 40 H 1.09005 * 109.47124 * 300.00327 * 16 13 12 41 41 H 0.96999 * 119.99984 * 359.97438 * 17 16 13 42 42 H 0.96996 * 119.99743 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3099 1.0812 0.0000 4 7 3.5813 0.6541 -0.0064 5 6 3.5968 -0.6509 -0.0046 6 7 2.3229 -1.0991 0.0025 7 6 1.8943 -2.5000 0.0073 8 6 1.6225 -2.9468 -1.4062 9 8 1.7725 -2.1716 -2.3267 10 7 1.2127 -4.2079 -1.6471 11 6 1.0320 -5.1446 -0.5352 12 6 0.9480 -4.6421 -3.0210 13 6 -0.5177 -4.3722 -3.3677 14 1 -1.1600 -4.8516 -2.6289 15 8 -0.7564 -2.9633 -3.3638 16 6 -0.8260 -4.9379 -4.7554 17 7 -2.2292 -4.6790 -5.0875 18 6 -2.7367 -5.0967 -6.2888 19 1 -2.1015 -5.6132 -6.9932 20 6 -4.0664 -4.8518 -6.6034 21 7 -4.8392 -4.2177 -5.7472 22 14 -4.7586 -5.4210 -8.2424 23 1 -4.6310 -6.8968 -8.3478 24 1 -6.1909 -5.0398 -8.3340 25 1 -4.0041 -4.7786 -9.3483 26 1 -0.3632 0.0029 1.0277 27 1 -0.3633 0.8885 -0.5163 28 1 -0.3634 -0.8914 -0.5113 29 1 1.9866 2.1117 0.0008 30 1 4.4819 -1.2698 -0.0089 31 1 0.9858 -2.6000 0.6010 32 1 2.6806 -3.1190 0.4391 33 1 1.9656 -5.6768 -0.3532 34 1 0.7471 -4.5937 0.3612 35 1 0.2490 -5.8599 -0.7864 36 1 1.1519 -5.7092 -3.1106 37 1 1.5910 -4.0905 -3.7067 38 1 -0.2177 -2.4715 -3.9987 39 1 -0.6440 -6.0126 -4.7584 40 1 -0.1837 -4.4586 -5.4941 41 1 -2.7987 -4.2116 -4.4566 42 1 -5.7682 -4.0463 -5.9671 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001677100411.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:57:42 Heat of formation + Delta-G solvation = -28.566523 kcal Electronic energy + Delta-G solvation = -24216.987200 eV Core-core repulsion = 20619.003291 eV Total energy + Delta-G solvation = -3597.983909 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 296.164 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.08641 -40.94796 -38.72685 -36.46913 -35.87034 -34.99764 -33.22664 -32.83978 -31.21753 -28.93728 -27.94627 -27.31999 -26.50764 -24.51251 -22.71158 -22.40104 -21.43557 -20.15636 -19.25456 -18.54596 -18.13293 -17.66854 -17.01696 -16.64122 -16.48363 -16.14848 -15.85923 -15.57196 -15.13715 -14.94630 -14.63031 -14.38039 -14.16884 -14.00413 -13.88308 -13.70401 -13.60939 -13.29319 -13.26496 -13.13127 -12.96145 -12.75644 -12.62538 -12.23060 -12.05094 -11.83528 -11.38114 -11.12863 -10.98365 -10.93919 -10.38271 -9.59910 -9.22009 -9.03488 -7.96655 -5.26653 0.98221 1.45093 1.48896 1.51302 1.55112 1.69459 2.11364 2.23773 2.54083 3.33015 3.37994 3.51577 3.72452 3.78832 3.80250 3.89035 4.04931 4.06437 4.18027 4.26325 4.32794 4.46712 4.49691 4.53731 4.67116 4.71118 4.79020 4.86463 4.88988 4.97423 5.03581 5.21804 5.40081 5.42048 5.45699 5.81098 6.19410 6.24016 6.36919 6.74478 7.09188 7.12908 7.30700 8.07097 8.29724 9.26449 Molecular weight = 296.16amu Principal moments of inertia in cm(-1) A = 0.024229 B = 0.003115 C = 0.002923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.361418 B = 8986.464372 C = 9576.132143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.015 4.015 3 C -0.060 4.060 4 N -0.532 5.532 5 C 0.183 3.817 6 N -0.444 5.444 7 C 0.090 3.910 8 C 0.493 3.507 9 O -0.565 6.565 10 N -0.604 5.604 11 C 0.062 3.938 12 C 0.097 3.903 13 C 0.097 3.903 14 H 0.093 0.907 15 O -0.564 6.564 16 C 0.122 3.878 17 N -0.741 5.741 18 C -0.251 4.251 19 H 0.077 0.923 20 C -0.076 4.076 21 N -0.969 5.969 22 Si 0.976 3.024 23 H -0.274 1.274 24 H -0.295 1.295 25 H -0.279 1.279 26 H 0.093 0.907 27 H 0.082 0.918 28 H 0.053 0.947 29 H 0.174 0.826 30 H 0.234 0.766 31 H 0.141 0.859 32 H 0.166 0.834 33 H 0.088 0.912 34 H 0.092 0.908 35 H 0.079 0.921 36 H 0.117 0.883 37 H 0.073 0.927 38 H 0.373 0.627 39 H 0.041 0.959 40 H 0.018 0.982 41 H 0.375 0.625 42 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.423 -1.990 18.245 24.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.130 4.130 3 C -0.206 4.206 4 N -0.250 5.250 5 C -0.099 4.099 6 N -0.127 5.127 7 C -0.036 4.036 8 C 0.280 3.720 9 O -0.443 6.443 10 N -0.336 5.336 11 C -0.079 4.079 12 C -0.027 4.027 13 C 0.036 3.964 14 H 0.111 0.889 15 O -0.370 6.370 16 C -0.005 4.005 17 N -0.384 5.384 18 C -0.383 4.383 19 H 0.095 0.905 20 C -0.269 4.269 21 N -0.619 5.619 22 Si 0.805 3.195 23 H -0.199 1.199 24 H -0.221 1.221 25 H -0.206 1.206 26 H 0.112 0.888 27 H 0.101 0.899 28 H 0.072 0.928 29 H 0.191 0.809 30 H 0.250 0.750 31 H 0.158 0.842 32 H 0.184 0.816 33 H 0.107 0.893 34 H 0.111 0.889 35 H 0.098 0.902 36 H 0.135 0.865 37 H 0.091 0.909 38 H 0.221 0.779 39 H 0.059 0.941 40 H 0.036 0.964 41 H 0.207 0.793 42 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 16.751 -1.477 18.082 24.692 hybrid contribution -1.214 -0.314 -1.499 1.954 sum 15.537 -1.791 16.583 22.795 Atomic orbital electron populations 1.20230 0.86100 1.03344 1.03446 1.21542 0.95392 0.86948 1.09113 1.22283 0.88605 0.99351 1.10355 1.70194 1.23232 1.10467 1.21088 1.25472 0.88070 0.91647 1.04688 1.45039 1.07096 1.06236 1.54358 1.22017 1.06787 0.80298 0.94478 1.21202 0.76938 0.81946 0.91889 1.90755 1.52950 1.53422 1.47125 1.47777 1.65999 1.11609 1.08240 1.22253 1.03872 0.93516 0.88296 1.22040 0.94804 1.02320 0.83531 1.22427 0.96281 0.81723 0.95942 0.88898 1.86509 1.67787 1.18752 1.63921 1.21448 0.85793 0.98322 0.94953 1.42436 1.07549 1.69420 1.18954 1.19629 0.94053 1.29602 0.94992 0.90544 1.25634 0.97116 1.02024 1.02086 1.69839 1.06501 1.47968 1.37611 0.85175 0.76754 0.78249 0.79344 1.19935 1.22128 1.20561 0.88807 0.89941 0.92827 0.80869 0.75017 0.84157 0.81646 0.89339 0.88900 0.90185 0.86466 0.90876 0.77915 0.94102 0.96404 0.79344 0.93989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.45 10.08 71.24 0.72 -0.73 16 2 C -0.02 -0.36 6.95 40.95 0.28 -0.08 16 3 C -0.06 -1.58 11.79 83.52 0.98 -0.60 16 4 N -0.53 -14.89 11.25 -200.30 -2.25 -17.14 16 5 C 0.18 3.93 12.56 180.26 2.26 6.19 16 6 N -0.44 -8.91 2.24 -518.61 -1.16 -10.07 16 7 C 0.09 1.11 4.83 85.64 0.41 1.52 16 8 C 0.49 10.24 7.37 87.66 0.65 10.89 16 9 O -0.56 -17.81 14.99 4.35 0.07 -17.75 16 10 N -0.60 -10.18 2.86 -846.74 -2.42 -12.60 16 11 C 0.06 0.44 10.24 127.77 1.31 1.75 16 12 C 0.10 2.10 5.11 86.38 0.44 2.54 16 13 C 0.10 2.96 3.30 30.59 0.10 3.06 16 14 H 0.09 2.88 8.14 -2.38 -0.02 2.86 16 15 O -0.56 -20.79 11.95 -141.61 -1.69 -22.49 16 16 C 0.12 4.68 5.92 86.38 0.51 5.20 16 17 N -0.74 -38.30 5.49 -343.45 -1.89 -40.19 16 18 C -0.25 -14.22 9.99 84.04 0.84 -13.38 16 19 H 0.08 4.11 7.83 -2.91 -0.02 4.08 16 20 C -0.08 -4.45 5.50 84.86 0.47 -3.99 16 21 N -0.97 -60.63 13.06 21.65 0.28 -60.35 16 22 Si 0.98 46.50 29.55 68.60 2.03 48.53 16 23 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 24 H -0.30 -14.15 7.11 99.48 0.71 -13.44 16 25 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 26 H 0.09 1.37 8.14 -2.38 -0.02 1.35 16 27 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 28 H 0.05 1.23 7.96 -2.39 -0.02 1.21 16 29 H 0.17 3.95 8.06 -2.91 -0.02 3.93 16 30 H 0.23 2.97 8.06 -2.91 -0.02 2.95 16 31 H 0.14 1.15 7.29 -2.39 -0.02 1.13 16 32 H 0.17 0.54 8.10 -2.39 -0.02 0.52 16 33 H 0.09 0.20 8.14 -2.39 -0.02 0.18 16 34 H 0.09 0.26 6.44 -2.39 -0.02 0.24 16 35 H 0.08 0.63 8.07 -2.39 -0.02 0.61 16 36 H 0.12 1.85 8.07 -2.38 -0.02 1.83 16 37 H 0.07 1.84 7.42 -2.39 -0.02 1.83 16 38 H 0.37 13.65 8.75 -74.06 -0.65 13.00 16 39 H 0.04 1.45 8.14 -2.38 -0.02 1.43 16 40 H 0.02 0.70 8.14 -2.38 -0.02 0.69 16 41 H 0.37 21.20 7.54 -92.71 -0.70 20.50 16 42 H 0.25 15.23 8.31 -92.71 -0.77 14.46 16 Total: -1.00 -84.16 357.09 1.63 -82.53 By element: Atomic # 1 Polarization: 37.46 SS G_CDS: -0.31 Total: 37.15 kcal Atomic # 6 Polarization: 3.39 SS G_CDS: 8.98 Total: 12.37 kcal Atomic # 7 Polarization: -132.90 SS G_CDS: -7.44 Total: -140.34 kcal Atomic # 8 Polarization: -38.61 SS G_CDS: -1.63 Total: -40.23 kcal Atomic # 14 Polarization: 46.50 SS G_CDS: 2.03 Total: 48.53 kcal Total: -84.16 1.63 -82.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677100411.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.960 kcal (2) G-P(sol) polarization free energy of solvation -84.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds