Wall clock time and date at job start Tue Mar 31 2020 03:23:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86806 * 119.99747 * 2 1 4 4 H 1.48498 * 109.46978 * 273.67308 * 3 2 1 5 5 H 1.48500 * 109.47472 * 33.67653 * 3 2 1 6 6 H 1.48507 * 109.46904 * 153.67599 * 3 2 1 7 7 C 1.38804 * 120.00120 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99971 * 339.32842 * 7 2 1 9 9 N 1.36940 * 120.00075 * 159.33155 * 7 2 1 10 10 C 1.46965 * 120.59408 * 332.31831 * 9 7 2 11 11 C 1.53372 * 108.63676 * 235.20701 * 10 9 7 12 12 N 1.46957 * 108.63378 * 310.57526 * 11 10 9 13 13 C 1.34774 * 120.59522 * 235.20299 * 12 11 10 14 14 O 1.21280 * 120.00042 * 0.02562 * 13 12 11 15 15 C 1.50699 * 120.00220 * 180.02562 * 13 12 11 16 16 C 1.52998 * 109.47247 * 179.97438 * 15 13 12 17 17 O 1.42901 * 109.47291 * 299.99798 * 16 15 13 18 18 C 1.53008 * 109.47290 * 59.99484 * 16 15 13 19 19 C 1.52998 * 109.47290 * 179.97438 * 18 16 15 20 20 C 1.53005 * 109.47073 * 300.00297 * 19 18 16 21 21 C 1.52994 * 109.47405 * 59.99781 * 20 19 18 22 22 C 1.52998 * 109.47184 * 300.00151 * 21 20 19 23 23 C 1.46970 * 118.81447 * 55.48005 * 12 11 10 24 24 C 1.46965 * 120.59367 * 152.30046 * 9 7 2 25 25 H 0.97003 * 120.00053 * 0.02562 * 1 2 3 26 26 H 1.09001 * 109.60997 * 115.46124 * 10 9 7 27 27 H 1.09002 * 109.61078 * 354.95609 * 10 9 7 28 28 H 1.09006 * 109.60701 * 190.83088 * 11 10 9 29 29 H 1.09002 * 109.60920 * 70.32103 * 11 10 9 30 30 H 1.08996 * 109.47297 * 59.99667 * 15 13 12 31 31 H 1.09008 * 109.46914 * 299.99669 * 15 13 12 32 32 H 0.96705 * 113.99899 * 59.99648 * 17 16 15 33 33 H 1.09000 * 109.47008 * 300.00697 * 18 16 15 34 34 H 1.09004 * 109.46695 * 59.99769 * 18 16 15 35 35 H 1.08996 * 109.47175 * 180.02562 * 19 18 16 36 36 H 1.08999 * 109.46744 * 60.00230 * 19 18 16 37 37 H 1.08999 * 109.46831 * 299.99318 * 20 19 18 38 38 H 1.08995 * 109.46695 * 180.02562 * 20 19 18 39 39 H 1.08994 * 109.47521 * 179.97438 * 21 20 19 40 40 H 1.09008 * 109.46927 * 59.99874 * 21 20 19 41 41 H 1.08995 * 109.47222 * 299.99728 * 22 21 20 42 42 H 1.09001 * 109.47474 * 179.97438 * 22 21 20 43 43 H 1.08999 * 109.60941 * 64.26239 * 23 12 11 44 44 H 1.08996 * 109.61160 * 184.77515 * 23 12 11 45 45 H 1.09002 * 109.60949 * 244.53728 * 24 9 7 46 46 H 1.08993 * 109.61047 * 5.05210 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4199 2.0913 -1.3972 5 1 1.4886 2.6291 0.7763 6 1 3.5844 1.4191 0.6209 7 6 2.0102 -1.2021 0.0005 8 1 1.5224 -2.1071 0.3311 9 7 3.3135 -1.2404 -0.4180 10 6 3.8145 -0.2632 -1.3947 11 6 4.4237 -1.0227 -2.5797 12 7 5.3465 -2.0415 -2.0600 13 6 6.6292 -2.0793 -2.4720 14 8 7.0313 -1.2675 -3.2783 15 6 7.5639 -3.1302 -1.9307 16 6 8.9487 -2.9521 -2.5563 17 8 8.8512 -3.0869 -3.9756 18 6 9.4891 -1.5627 -2.2120 19 6 10.8742 -1.3849 -2.8371 20 6 11.8229 -2.4519 -2.2869 21 6 11.2825 -3.8412 -2.6312 22 6 9.8974 -4.0190 -2.0061 23 6 4.8441 -3.0223 -1.0876 24 6 4.2363 -2.2593 0.1017 25 1 -0.4850 0.8401 -0.0004 26 1 4.5772 0.3611 -0.9292 27 1 2.9912 0.3601 -1.7439 28 1 4.9684 -0.3275 -3.2187 29 1 3.6309 -1.5048 -3.1517 30 1 7.1791 -4.1200 -2.1764 31 1 7.6380 -3.0276 -0.8480 32 1 8.2645 -2.4411 -4.3926 33 1 8.8130 -0.8026 -2.6035 34 1 9.5635 -1.4599 -1.1294 35 1 11.2594 -0.3953 -2.5914 36 1 10.8002 -1.4879 -3.9196 37 1 11.8969 -2.3488 -1.2043 38 1 12.8097 -2.3248 -2.7319 39 1 11.9585 -4.6013 -2.2397 40 1 11.2085 -3.9442 -3.7139 41 1 9.9714 -3.9160 -0.9236 42 1 9.5122 -5.0087 -2.2518 43 1 4.0806 -3.6435 -1.5558 44 1 5.6665 -3.6481 -0.7410 45 1 5.0291 -1.7772 0.6737 46 1 3.6917 -2.9544 0.7406 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000073851796.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:23:27 Heat of formation + Delta-G solvation = -70.252770 kcal Electronic energy + Delta-G solvation = -25633.298477 eV Core-core repulsion = 22137.047260 eV Total energy + Delta-G solvation = -3496.251217 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.61130 -38.85375 -37.07418 -34.97180 -34.14151 -32.01747 -31.49092 -30.89577 -30.63623 -27.97377 -26.59035 -23.75241 -23.29574 -22.80893 -21.73540 -20.76213 -19.80344 -18.75721 -17.33812 -16.49496 -16.29578 -15.88435 -15.72911 -15.28225 -14.94317 -14.56308 -14.35410 -14.25713 -13.93583 -13.63789 -13.42259 -13.05414 -12.84790 -12.59031 -12.43941 -12.29557 -12.07057 -12.04301 -11.77641 -11.60476 -11.17957 -11.13997 -11.02756 -10.82069 -10.58502 -10.53841 -10.32878 -10.31777 -10.05891 -9.68560 -9.63045 -9.35523 -8.94149 -8.39654 -7.07834 -6.06073 -3.44118 2.69442 3.16020 3.24840 3.42318 3.44171 4.21953 4.42415 4.45789 4.52732 4.71059 4.76210 4.85073 4.96912 5.10616 5.18088 5.22477 5.34089 5.38557 5.44924 5.45628 5.46758 5.56221 5.59704 5.66244 5.69933 5.76999 5.87301 5.93254 5.97416 6.02748 6.08279 6.10891 6.12496 6.16269 6.32357 6.38814 6.41192 6.43287 6.59821 6.78896 7.60152 7.80723 7.82813 8.20749 8.30320 8.79106 9.58840 9.94462 11.09393 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.031359 B = 0.003720 C = 0.003591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.667927 B = 7524.117807 C = 7795.093908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.027 3.973 3 Si 0.881 3.119 4 H -0.287 1.287 5 H -0.301 1.301 6 H -0.271 1.271 7 C -0.267 4.267 8 H 0.088 0.912 9 N -0.605 5.605 10 C 0.114 3.886 11 C 0.094 3.906 12 N -0.595 5.595 13 C 0.514 3.486 14 O -0.557 6.557 15 C -0.171 4.171 16 C 0.157 3.843 17 O -0.562 6.562 18 C -0.157 4.157 19 C -0.112 4.112 20 C -0.120 4.120 21 C -0.114 4.114 22 C -0.105 4.105 23 C 0.086 3.914 24 C 0.134 3.866 25 H 0.264 0.736 26 H 0.030 0.970 27 H 0.083 0.917 28 H 0.086 0.914 29 H 0.071 0.929 30 H 0.099 0.901 31 H 0.100 0.900 32 H 0.385 0.615 33 H 0.095 0.905 34 H 0.060 0.940 35 H 0.056 0.944 36 H 0.067 0.933 37 H 0.057 0.943 38 H 0.057 0.943 39 H 0.057 0.943 40 H 0.071 0.929 41 H 0.072 0.928 42 H 0.067 0.933 43 H 0.073 0.927 44 H 0.078 0.922 45 H 0.028 0.972 46 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.713 -7.556 -3.521 21.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.173 4.173 3 Si 0.711 3.289 4 H -0.214 1.214 5 H -0.229 1.229 6 H -0.196 1.196 7 C -0.395 4.395 8 H 0.105 0.895 9 N -0.329 5.329 10 C -0.012 4.012 11 C -0.030 4.030 12 N -0.326 5.326 13 C 0.304 3.696 14 O -0.439 6.439 15 C -0.211 4.211 16 C 0.116 3.884 17 O -0.373 6.373 18 C -0.195 4.195 19 C -0.150 4.150 20 C -0.157 4.157 21 C -0.151 4.151 22 C -0.142 4.142 23 C -0.039 4.039 24 C 0.007 3.993 25 H 0.074 0.926 26 H 0.048 0.952 27 H 0.101 0.899 28 H 0.104 0.896 29 H 0.089 0.911 30 H 0.117 0.883 31 H 0.118 0.882 32 H 0.237 0.763 33 H 0.113 0.887 34 H 0.079 0.921 35 H 0.074 0.926 36 H 0.085 0.915 37 H 0.076 0.924 38 H 0.076 0.924 39 H 0.076 0.924 40 H 0.089 0.911 41 H 0.091 0.909 42 H 0.086 0.914 43 H 0.091 0.909 44 H 0.096 0.904 45 H 0.046 0.954 46 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 20.110 -7.524 -3.788 21.803 hybrid contribution -0.212 1.423 0.144 1.446 sum 19.898 -6.101 -3.644 21.129 Atomic orbital electron populations 1.69826 1.05721 1.26752 1.52303 1.25279 0.95223 0.97616 0.99164 0.86983 0.80066 0.84678 0.77173 1.21440 1.22876 1.19633 1.18909 0.84703 0.94906 1.40962 0.89460 1.44293 1.08590 1.33847 1.46136 1.21726 0.97659 0.92282 0.89543 1.22265 0.92068 0.91054 0.97584 1.48076 1.09623 1.31851 1.43061 1.20581 0.82386 0.85188 0.81486 1.90494 1.75432 1.42215 1.35759 1.22495 0.96190 0.99585 1.02812 1.20760 0.91068 0.94902 0.81714 1.86356 1.71279 1.60816 1.18807 1.22459 0.97935 0.98335 1.00739 1.21409 0.94619 0.97905 1.01019 1.21556 0.98450 0.95192 1.00524 1.21423 0.95375 0.96558 1.01767 1.21526 0.94987 0.98081 0.99640 1.22546 0.98922 0.91093 0.91325 1.21384 0.93036 0.92002 0.92855 0.92581 0.95171 0.89880 0.89593 0.91116 0.88290 0.88216 0.76277 0.88688 0.92148 0.92552 0.91457 0.92417 0.92391 0.92410 0.91073 0.90897 0.91387 0.90892 0.90376 0.95412 0.90459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.93 13.97 55.49 0.78 -26.16 16 2 C 0.03 0.75 5.23 -17.44 -0.09 0.66 16 3 Si 0.88 21.85 24.38 -169.99 -4.14 17.71 16 4 H -0.29 -6.87 6.64 56.52 0.38 -6.50 16 5 H -0.30 -7.61 7.11 56.52 0.40 -7.21 16 6 H -0.27 -6.68 6.64 56.52 0.38 -6.31 16 7 C -0.27 -7.12 10.03 -15.06 -0.15 -7.27 16 8 H 0.09 2.46 8.06 -52.49 -0.42 2.04 16 9 N -0.60 -13.61 2.74 -171.76 -0.47 -14.08 16 10 C 0.11 2.43 4.37 -3.60 -0.02 2.41 16 11 C 0.09 1.70 6.59 -3.60 -0.02 1.68 16 12 N -0.59 -9.46 2.94 -172.21 -0.51 -9.96 16 13 C 0.51 7.58 7.20 -10.99 -0.08 7.50 16 14 O -0.56 -9.27 11.10 -12.69 -0.14 -9.41 16 15 C -0.17 -1.92 3.32 -27.88 -0.09 -2.01 16 16 C 0.16 1.79 0.68 -90.62 -0.06 1.73 16 17 O -0.56 -7.40 11.61 -53.48 -0.62 -8.02 16 18 C -0.16 -1.87 4.60 -26.73 -0.12 -1.99 16 19 C -0.11 -1.20 5.78 -26.73 -0.15 -1.36 16 20 C -0.12 -1.10 5.92 -26.73 -0.16 -1.26 16 21 C -0.11 -1.06 5.78 -26.74 -0.15 -1.21 16 22 C -0.10 -1.00 4.94 -26.73 -0.13 -1.13 16 23 C 0.09 1.22 6.54 -3.36 -0.02 1.20 16 24 C 0.13 2.37 6.69 -3.36 -0.02 2.34 16 25 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 26 H 0.03 0.66 7.18 -51.93 -0.37 0.29 16 27 H 0.08 1.92 4.41 -51.93 -0.23 1.69 16 28 H 0.09 1.52 6.99 -51.93 -0.36 1.15 16 29 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 30 H 0.10 1.00 7.90 -51.93 -0.41 0.59 16 31 H 0.10 0.98 7.73 -51.92 -0.40 0.58 16 32 H 0.38 5.30 6.54 45.56 0.30 5.60 16 33 H 0.09 1.37 5.51 -51.93 -0.29 1.08 16 34 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.07 0.78 7.68 -51.93 -0.40 0.39 16 37 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 40 H 0.07 0.76 7.68 -51.92 -0.40 0.36 16 41 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 44 H 0.08 0.84 5.91 -51.93 -0.31 0.53 16 45 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 46 H 0.08 1.31 7.93 -51.93 -0.41 0.89 16 LS Contribution 338.04 15.07 5.09 5.09 Total: -1.00 -30.27 338.04 -8.41 -38.68 By element: Atomic # 1 Polarization: 11.97 SS G_CDS: -7.12 Total: 4.85 kcal Atomic # 6 Polarization: 2.58 SS G_CDS: -1.28 Total: 1.29 kcal Atomic # 7 Polarization: -50.00 SS G_CDS: -0.20 Total: -50.20 kcal Atomic # 8 Polarization: -16.67 SS G_CDS: -0.76 Total: -17.43 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -4.14 Total: 17.71 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -30.27 -8.41 -38.68 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000073851796.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.568 kcal (2) G-P(sol) polarization free energy of solvation -30.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds