Wall clock time and date at job start Tue Mar 31 2020 03:23:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86806 * 119.99747 * 2 1 4 4 H 1.48498 * 109.46978 * 273.67308 * 3 2 1 5 5 H 1.48500 * 109.47472 * 33.67653 * 3 2 1 6 6 H 1.48507 * 109.46904 * 153.67599 * 3 2 1 7 7 C 1.38804 * 120.00120 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99971 * 339.32842 * 7 2 1 9 9 N 1.36940 * 120.00075 * 159.33155 * 7 2 1 10 10 C 1.46965 * 120.59408 * 332.31831 * 9 7 2 11 11 C 1.53372 * 108.63676 * 235.20701 * 10 9 7 12 12 N 1.46957 * 108.63378 * 310.57526 * 11 10 9 13 13 C 1.34774 * 120.59522 * 235.20299 * 12 11 10 14 14 O 1.21280 * 120.00042 * 0.02562 * 13 12 11 15 15 C 1.50699 * 120.00220 * 180.02562 * 13 12 11 16 16 C 1.52998 * 109.47247 * 179.97438 * 15 13 12 17 17 O 1.42901 * 109.47291 * 299.99798 * 16 15 13 18 18 C 1.53008 * 109.47290 * 59.99484 * 16 15 13 19 19 C 1.52998 * 109.47290 * 179.97438 * 18 16 15 20 20 C 1.53005 * 109.47073 * 300.00297 * 19 18 16 21 21 C 1.52994 * 109.47405 * 59.99781 * 20 19 18 22 22 C 1.52998 * 109.47184 * 300.00151 * 21 20 19 23 23 C 1.46970 * 118.81447 * 55.48005 * 12 11 10 24 24 C 1.46965 * 120.59367 * 152.30046 * 9 7 2 25 25 H 0.97003 * 120.00053 * 0.02562 * 1 2 3 26 26 H 1.09001 * 109.60997 * 115.46124 * 10 9 7 27 27 H 1.09002 * 109.61078 * 354.95609 * 10 9 7 28 28 H 1.09006 * 109.60701 * 190.83088 * 11 10 9 29 29 H 1.09002 * 109.60920 * 70.32103 * 11 10 9 30 30 H 1.08996 * 109.47297 * 59.99667 * 15 13 12 31 31 H 1.09008 * 109.46914 * 299.99669 * 15 13 12 32 32 H 0.96705 * 113.99899 * 59.99648 * 17 16 15 33 33 H 1.09000 * 109.47008 * 300.00697 * 18 16 15 34 34 H 1.09004 * 109.46695 * 59.99769 * 18 16 15 35 35 H 1.08996 * 109.47175 * 180.02562 * 19 18 16 36 36 H 1.08999 * 109.46744 * 60.00230 * 19 18 16 37 37 H 1.08999 * 109.46831 * 299.99318 * 20 19 18 38 38 H 1.08995 * 109.46695 * 180.02562 * 20 19 18 39 39 H 1.08994 * 109.47521 * 179.97438 * 21 20 19 40 40 H 1.09008 * 109.46927 * 59.99874 * 21 20 19 41 41 H 1.08995 * 109.47222 * 299.99728 * 22 21 20 42 42 H 1.09001 * 109.47474 * 179.97438 * 22 21 20 43 43 H 1.08999 * 109.60941 * 64.26239 * 23 12 11 44 44 H 1.08996 * 109.61160 * 184.77515 * 23 12 11 45 45 H 1.09002 * 109.60949 * 244.53728 * 24 9 7 46 46 H 1.08993 * 109.61047 * 5.05210 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4199 2.0913 -1.3972 5 1 1.4886 2.6291 0.7763 6 1 3.5844 1.4191 0.6209 7 6 2.0102 -1.2021 0.0005 8 1 1.5224 -2.1071 0.3311 9 7 3.3135 -1.2404 -0.4180 10 6 3.8145 -0.2632 -1.3947 11 6 4.4237 -1.0227 -2.5797 12 7 5.3465 -2.0415 -2.0600 13 6 6.6292 -2.0793 -2.4720 14 8 7.0313 -1.2675 -3.2783 15 6 7.5639 -3.1302 -1.9307 16 6 8.9487 -2.9521 -2.5563 17 8 8.8512 -3.0869 -3.9756 18 6 9.4891 -1.5627 -2.2120 19 6 10.8742 -1.3849 -2.8371 20 6 11.8229 -2.4519 -2.2869 21 6 11.2825 -3.8412 -2.6312 22 6 9.8974 -4.0190 -2.0061 23 6 4.8441 -3.0223 -1.0876 24 6 4.2363 -2.2593 0.1017 25 1 -0.4850 0.8401 -0.0004 26 1 4.5772 0.3611 -0.9292 27 1 2.9912 0.3601 -1.7439 28 1 4.9684 -0.3275 -3.2187 29 1 3.6309 -1.5048 -3.1517 30 1 7.1791 -4.1200 -2.1764 31 1 7.6380 -3.0276 -0.8480 32 1 8.2645 -2.4411 -4.3926 33 1 8.8130 -0.8026 -2.6035 34 1 9.5635 -1.4599 -1.1294 35 1 11.2594 -0.3953 -2.5914 36 1 10.8002 -1.4879 -3.9196 37 1 11.8969 -2.3488 -1.2043 38 1 12.8097 -2.3248 -2.7319 39 1 11.9585 -4.6013 -2.2397 40 1 11.2085 -3.9442 -3.7139 41 1 9.9714 -3.9160 -0.9236 42 1 9.5122 -5.0087 -2.2518 43 1 4.0806 -3.6435 -1.5558 44 1 5.6665 -3.6481 -0.7410 45 1 5.0291 -1.7772 0.6737 46 1 3.6917 -2.9544 0.7406 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000073851796.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:23:27 Heat of formation + Delta-G solvation = -89.912599 kcal Electronic energy + Delta-G solvation = -25634.150991 eV Core-core repulsion = 22137.047260 eV Total energy + Delta-G solvation = -3497.103731 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.68961 -39.94767 -38.44875 -35.92496 -35.66480 -33.59319 -32.95120 -32.00951 -31.59783 -29.28486 -27.85326 -25.37467 -24.76506 -23.63846 -22.84846 -22.06484 -20.61721 -20.11697 -18.80187 -18.03482 -17.38075 -17.08853 -16.92962 -16.57344 -16.23888 -16.03207 -15.64908 -15.29510 -15.18337 -14.76616 -14.64672 -14.39645 -14.17224 -13.90925 -13.82903 -13.58084 -13.23550 -12.97738 -12.77786 -12.70770 -12.56447 -12.41474 -12.28285 -12.00448 -11.96265 -11.82592 -11.63353 -11.62591 -11.36630 -11.22353 -10.85882 -10.57278 -10.42208 -9.88901 -8.89376 -8.20731 -5.53382 1.26069 1.37845 1.45060 1.56646 1.95868 2.36590 3.01234 3.27607 3.35817 3.44623 3.68347 3.91190 3.96740 4.05197 4.11347 4.21268 4.27538 4.31190 4.37223 4.43805 4.52166 4.52928 4.59706 4.62804 4.66789 4.67495 4.78960 4.82250 4.85467 4.91511 4.97208 5.12599 5.15512 5.19259 5.31213 5.32466 5.38244 5.44864 5.55446 5.62690 5.81560 6.09005 6.44119 6.79593 6.84300 7.15744 7.55427 7.96162 8.98690 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.031359 B = 0.003720 C = 0.003591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.667927 B = 7524.117807 C = 7795.093908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C -0.029 4.029 3 Si 0.938 3.062 4 H -0.278 1.278 5 H -0.310 1.310 6 H -0.266 1.266 7 C -0.248 4.248 8 H 0.063 0.937 9 N -0.619 5.619 10 C 0.114 3.886 11 C 0.105 3.895 12 N -0.602 5.602 13 C 0.512 3.488 14 O -0.578 6.578 15 C -0.164 4.164 16 C 0.152 3.848 17 O -0.572 6.572 18 C -0.156 4.156 19 C -0.112 4.112 20 C -0.117 4.117 21 C -0.114 4.114 22 C -0.104 4.104 23 C 0.095 3.905 24 C 0.126 3.874 25 H 0.262 0.738 26 H 0.028 0.972 27 H 0.060 0.940 28 H 0.088 0.912 29 H 0.066 0.934 30 H 0.119 0.881 31 H 0.125 0.875 32 H 0.379 0.621 33 H 0.066 0.934 34 H 0.070 0.930 35 H 0.057 0.943 36 H 0.050 0.950 37 H 0.069 0.931 38 H 0.065 0.935 39 H 0.076 0.924 40 H 0.052 0.948 41 H 0.093 0.907 42 H 0.074 0.926 43 H 0.071 0.929 44 H 0.125 0.875 45 H 0.039 0.961 46 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.592 -9.046 -2.875 24.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.225 4.225 3 Si 0.768 3.232 4 H -0.205 1.205 5 H -0.238 1.238 6 H -0.191 1.191 7 C -0.377 4.377 8 H 0.081 0.919 9 N -0.344 5.344 10 C -0.012 4.012 11 C -0.020 4.020 12 N -0.333 5.333 13 C 0.303 3.697 14 O -0.461 6.461 15 C -0.204 4.204 16 C 0.111 3.889 17 O -0.382 6.382 18 C -0.193 4.193 19 C -0.150 4.150 20 C -0.154 4.154 21 C -0.151 4.151 22 C -0.141 4.141 23 C -0.028 4.028 24 C 0.001 3.999 25 H 0.071 0.929 26 H 0.046 0.954 27 H 0.078 0.922 28 H 0.106 0.894 29 H 0.084 0.916 30 H 0.137 0.863 31 H 0.143 0.857 32 H 0.230 0.770 33 H 0.085 0.915 34 H 0.088 0.912 35 H 0.076 0.924 36 H 0.069 0.931 37 H 0.087 0.913 38 H 0.083 0.917 39 H 0.094 0.906 40 H 0.071 0.929 41 H 0.112 0.888 42 H 0.093 0.907 43 H 0.089 0.911 44 H 0.143 0.857 45 H 0.057 0.943 46 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 23.059 -9.046 -3.148 24.969 hybrid contribution -1.035 1.817 -0.080 2.092 sum 22.024 -7.229 -3.229 23.404 Atomic orbital electron populations 1.69942 1.07232 1.27207 1.55401 1.25831 0.95718 1.00566 1.00345 0.86041 0.78704 0.81088 0.77372 1.20490 1.23840 1.19113 1.18903 0.86450 0.93759 1.38596 0.91903 1.44435 1.08038 1.35101 1.46851 1.21649 0.96800 0.92305 0.90425 1.21915 0.92450 0.91578 0.96022 1.48147 1.09819 1.31708 1.43676 1.21257 0.82057 0.85485 0.80894 1.90509 1.75659 1.43252 1.36645 1.22559 0.94862 0.98954 1.03985 1.20966 0.91750 0.95294 0.80871 1.86364 1.71168 1.60563 1.20117 1.22403 0.97784 0.97978 1.01151 1.21397 0.94742 0.98821 1.00027 1.21544 0.98246 0.94480 1.01147 1.21423 0.95909 0.97078 1.00717 1.21583 0.94295 0.97523 1.00713 1.22531 1.00421 0.90436 0.89421 1.21647 0.92489 0.91172 0.94566 0.92881 0.95386 0.92195 0.89406 0.91589 0.86308 0.85750 0.76969 0.91543 0.91152 0.92388 0.93115 0.91257 0.91670 0.90582 0.92929 0.88827 0.90701 0.91069 0.85689 0.94339 0.89979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.37 13.97 21.65 0.30 -58.07 16 2 C -0.03 -1.66 5.23 84.86 0.44 -1.22 16 3 Si 0.94 45.93 24.38 68.60 1.67 47.60 16 4 H -0.28 -13.02 6.64 99.48 0.66 -12.36 16 5 H -0.31 -15.45 7.11 99.48 0.71 -14.74 16 6 H -0.27 -12.64 6.64 99.48 0.66 -11.98 16 7 C -0.25 -13.32 10.03 84.03 0.84 -12.48 16 8 H 0.06 3.63 8.06 -2.91 -0.02 3.61 16 9 N -0.62 -27.30 2.74 -697.34 -1.91 -29.21 16 10 C 0.11 4.77 4.37 86.42 0.38 5.15 16 11 C 0.11 3.68 6.59 86.42 0.57 4.25 16 12 N -0.60 -17.59 2.94 -817.15 -2.40 -19.99 16 13 C 0.51 13.74 7.20 87.66 0.63 14.37 16 14 O -0.58 -18.51 11.10 14.42 0.16 -18.35 16 15 C -0.16 -3.01 3.32 29.85 0.10 -2.91 16 16 C 0.15 3.02 0.68 -10.79 -0.01 3.02 16 17 O -0.57 -14.19 11.61 -131.53 -1.53 -15.71 16 18 C -0.16 -3.38 4.60 30.60 0.14 -3.24 16 19 C -0.11 -2.24 5.78 30.60 0.18 -2.07 16 20 C -0.12 -1.83 5.92 30.59 0.18 -1.64 16 21 C -0.11 -1.77 5.78 30.59 0.18 -1.60 16 22 C -0.10 -1.57 4.94 30.59 0.15 -1.41 16 23 C 0.10 2.39 6.54 86.57 0.57 2.95 16 24 C 0.13 4.15 6.69 86.57 0.58 4.73 16 25 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 26 H 0.03 1.19 7.18 -2.39 -0.02 1.17 16 27 H 0.06 2.77 4.41 -2.39 -0.01 2.76 16 28 H 0.09 3.04 6.99 -2.38 -0.02 3.02 16 29 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 30 H 0.12 1.79 7.90 -2.39 -0.02 1.77 16 31 H 0.12 1.74 7.73 -2.38 -0.02 1.72 16 32 H 0.38 10.21 6.54 -74.05 -0.48 9.73 16 33 H 0.07 1.85 5.51 -2.39 -0.01 1.83 16 34 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.05 1.16 7.68 -2.39 -0.02 1.14 16 37 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 39 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 40 H 0.05 1.02 7.68 -2.38 -0.02 1.00 16 41 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 42 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 43 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 44 H 0.13 1.99 5.91 -2.39 -0.01 1.97 16 45 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 46 H 0.08 2.60 7.93 -2.39 -0.02 2.58 16 Total: -1.00 -67.06 338.04 1.61 -65.45 By element: Atomic # 1 Polarization: 20.01 SS G_CDS: 0.39 Total: 20.40 kcal Atomic # 6 Polarization: 2.97 SS G_CDS: 4.93 Total: 7.89 kcal Atomic # 7 Polarization: -103.27 SS G_CDS: -4.01 Total: -107.28 kcal Atomic # 8 Polarization: -32.70 SS G_CDS: -1.37 Total: -34.07 kcal Atomic # 14 Polarization: 45.93 SS G_CDS: 1.67 Total: 47.60 kcal Total: -67.06 1.61 -65.45 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000073851796.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.464 kcal (2) G-P(sol) polarization free energy of solvation -67.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds