Wall clock time and date at job start Tue Mar 31 2020 03:28:54
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31621 * 1
3 3 Si 1.86800 * 119.99894 * 2 1
4 4 H 1.48504 * 109.46788 * 179.97438 * 3 2 1
5 5 H 1.48499 * 109.47041 * 299.99656 * 3 2 1
6 6 H 1.48497 * 109.47258 * 59.99785 * 3 2 1
7 7 C 1.38815 * 119.99984 * 179.97438 * 2 1 3
8 8 H 1.08001 * 119.99853 * 163.17555 * 7 2 1
9 9 N 1.36933 * 119.99826 * 343.17890 * 7 2 1
10 10 C 1.46923 * 120.63142 * 331.58665 * 9 7 2
11 11 C 1.53197 * 108.77587 * 233.88375 * 10 9 7
12 12 C 1.53031 * 109.31337 * 305.36720 * 11 10 9
13 13 C 1.53001 * 109.44880 * 181.37778 * 12 11 10
14 14 N 1.46505 * 109.47363 * 64.93695 * 13 12 11
15 15 C 1.34769 * 120.00170 * 179.97438 * 14 13 12
16 16 O 1.21286 * 119.99985 * 359.97438 * 15 14 13
17 17 C 1.50703 * 119.99983 * 180.02562 * 15 14 13
18 18 H 1.09002 * 109.52051 * 299.99669 * 17 15 14
19 19 C 1.53180 * 109.51948 * 179.87382 * 17 15 14
20 20 C 1.53191 * 109.02803 * 183.17497 * 19 17 15
21 21 C 1.53084 * 109.21288 * 56.88691 * 20 19 17
22 22 O 1.42908 * 109.41783 * 302.42353 * 21 20 19
23 23 C 1.42900 * 114.09493 * 61.15790 * 22 21 20
24 24 C 1.53033 * 109.54059 * 61.36357 * 12 11 10
25 25 C 1.46930 * 120.63005 * 151.86766 * 9 7 2
26 26 H 0.97002 * 120.00123 * 0.02562 * 1 2 3
27 27 H 1.08999 * 109.59186 * 353.67075 * 10 9 7
28 28 H 1.08997 * 109.58930 * 114.09788 * 10 9 7
29 29 H 1.08998 * 109.49661 * 185.40909 * 11 10 9
30 30 H 1.09005 * 109.52101 * 65.33305 * 11 10 9
31 31 H 1.09007 * 109.45825 * 301.34055 * 12 11 10
32 32 H 1.09001 * 109.47087 * 184.93785 * 13 12 11
33 33 H 1.08996 * 109.47081 * 304.93436 * 13 12 11
34 34 H 0.96999 * 119.99796 * 0.02562 * 14 13 12
35 35 H 1.08992 * 109.54739 * 302.97957 * 19 17 15
36 36 H 1.09005 * 109.54116 * 63.24864 * 19 17 15
37 37 H 1.09006 * 109.46988 * 296.98258 * 20 19 17
38 38 H 1.09003 * 109.57212 * 176.85824 * 20 19 17
39 39 H 1.09003 * 109.47878 * 182.43899 * 21 20 19
40 40 H 1.09000 * 109.48518 * 62.40852 * 21 20 19
41 41 H 1.09004 * 109.47587 * 178.86091 * 23 22 21
42 42 H 1.09005 * 109.47911 * 58.82808 * 23 22 21
43 43 H 1.09004 * 109.50103 * 178.68363 * 24 12 11
44 44 H 1.09000 * 109.50172 * 58.58297 * 24 12 11
45 45 H 1.08998 * 109.58579 * 245.89878 * 25 9 7
46 46 H 1.08997 * 109.58590 * 6.32998 * 25 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2502 1.6178 0.0000
4 1 3.7102 1.3463 0.0006
5 1 1.8915 2.3964 -1.2125
6 1 1.8914 2.3965 1.2124
7 6 2.0103 -1.2022 0.0005
8 1 3.0556 -1.2223 -0.2702
9 7 1.3695 -2.3625 0.3442
10 6 0.2276 -2.3416 1.2685
11 6 0.5037 -3.3189 2.4155
12 6 0.8198 -4.7005 1.8382
13 6 1.0624 -5.6872 2.9821
14 7 -0.1741 -5.8595 3.7489
15 6 -0.1984 -6.6890 4.8107
16 8 0.8032 -7.2933 5.1313
17 6 -1.4704 -6.8667 5.5991
18 1 -1.7820 -5.9060 6.0091
19 6 -1.2298 -7.8573 6.7425
20 6 -2.5481 -8.0903 7.4872
21 6 -3.6044 -8.5886 6.4977
22 8 -3.7566 -7.6344 5.4447
23 6 -2.5684 -7.4123 4.6825
24 6 2.0730 -4.6154 0.9640
25 6 1.8147 -3.6528 -0.1995
26 1 -0.4850 0.8401 -0.0004
27 1 0.0995 -1.3357 1.6685
28 1 -0.6761 -2.6446 0.7398
29 1 -0.3752 -3.3849 3.0567
30 1 1.3539 -2.9651 2.9988
31 1 -0.0211 -5.0431 1.2352
32 1 1.3731 -6.6485 2.5729
33 1 1.8443 -5.3008 3.6356
34 1 -0.9754 -5.3771 3.4918
35 1 -0.8695 -8.8024 6.3364
36 1 -0.4891 -7.4481 7.4296
37 1 -2.8820 -7.1547 7.9361
38 1 -2.3995 -8.8363 8.2679
39 1 -4.5559 -8.7144 7.0144
40 1 -3.2887 -9.5443 6.0793
41 1 -2.7736 -6.6908 3.8916
42 1 -2.2390 -8.3527 4.2404
43 1 2.3110 -5.6043 0.5720
44 1 2.9086 -4.2491 1.5604
45 1 1.0404 -4.0628 -0.8479
46 1 2.7338 -3.5121 -0.7682
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000078997254.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:28:54
Heat of formation + Delta-G solvation = -85.466260 kcal
Electronic energy + Delta-G solvation = -24503.270336 eV
Core-core repulsion = 21006.359412 eV
Total energy + Delta-G solvation = -3496.910924 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 296.189 amu
Computer time = 0.65 seconds
Orbital eigenvalues (eV)
-40.49735 -38.87166 -37.77806 -35.02656 -33.86037 -33.01409 -31.73602 -30.50394
-29.86467 -26.99417 -25.31083 -24.74851 -23.71060 -22.28324 -21.32774 -20.89751
-20.04435 -19.11605 -17.49785 -16.77678 -16.58335 -16.32915 -15.72971 -15.41076
-14.87360 -14.74297 -14.41138 -14.03019 -13.79248 -13.60079 -13.51836 -13.24219
-13.02238 -12.81543 -12.41794 -12.34959 -11.98623 -11.76914 -11.45570 -11.41340
-11.26521 -11.00886 -10.74742 -10.73962 -10.53700 -10.25739 -10.23554 -10.04226
-9.92090 -9.74603 -9.56045 -9.44697 -9.01756 -8.48668 -6.67861 -5.80427
-3.22763 2.53973 3.11454 3.35971 3.44179 3.46379 3.53306 4.30162
4.48522 4.49656 4.51108 4.59215 4.78303 4.93530 5.03974 5.11129
5.22422 5.24847 5.33616 5.35057 5.41174 5.43567 5.52052 5.56698
5.62381 5.80371 5.85014 5.89644 5.96978 6.03574 6.13140 6.26878
6.39367 6.50492 6.55373 6.65391 6.74218 6.78726 6.80144 6.96876
7.33991 7.47454 7.62834 7.78809 8.15906 8.44181 9.20436 9.83862
10.40528 11.28145
Molecular weight = 296.19amu
Principal moments of inertia in cm(-1)
A = 0.026474 B = 0.002882 C = 0.002767
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1057.380042 B = 9713.441306 C =10117.276101
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.903 5.903
2 C 0.001 3.999
3 Si 0.901 3.099
4 H -0.278 1.278
5 H -0.290 1.290
6 H -0.289 1.289
7 C -0.251 4.251
8 H 0.065 0.935
9 N -0.593 5.593
10 C 0.171 3.829
11 C -0.135 4.135
12 C -0.091 4.091
13 C 0.123 3.877
14 N -0.723 5.723
15 C 0.517 3.483
16 O -0.543 6.543
17 C -0.145 4.145
18 H 0.107 0.893
19 C -0.102 4.102
20 C -0.157 4.157
21 C 0.056 3.944
22 O -0.376 6.376
23 C 0.072 3.928
24 C -0.125 4.125
25 C 0.146 3.854
26 H 0.253 0.747
27 H 0.087 0.913
28 H 0.017 0.983
29 H 0.045 0.955
30 H 0.056 0.944
31 H 0.069 0.931
32 H 0.062 0.938
33 H 0.065 0.935
34 H 0.402 0.598
35 H 0.072 0.928
36 H 0.075 0.925
37 H 0.073 0.927
38 H 0.077 0.923
39 H 0.095 0.905
40 H 0.052 0.948
41 H 0.100 0.900
42 H 0.057 0.943
43 H 0.052 0.948
44 H 0.060 0.940
45 H 0.017 0.983
46 H 0.054 0.946
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.140 -16.127 11.754 20.880
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.548 5.548
2 C -0.197 4.197
3 Si 0.731 3.269
4 H -0.203 1.203
5 H -0.217 1.217
6 H -0.216 1.216
7 C -0.381 4.381
8 H 0.083 0.917
9 N -0.316 5.316
10 C 0.045 3.955
11 C -0.175 4.175
12 C -0.110 4.110
13 C 0.000 4.000
14 N -0.374 5.374
15 C 0.302 3.698
16 O -0.420 6.420
17 C -0.167 4.167
18 H 0.125 0.875
19 C -0.139 4.139
20 C -0.195 4.195
21 C -0.020 4.020
22 O -0.294 6.294
23 C -0.005 4.005
24 C -0.165 4.165
25 C 0.020 3.980
26 H 0.063 0.937
27 H 0.105 0.895
28 H 0.035 0.965
29 H 0.064 0.936
30 H 0.075 0.925
31 H 0.087 0.913
32 H 0.081 0.919
33 H 0.084 0.916
34 H 0.237 0.763
35 H 0.090 0.910
36 H 0.094 0.906
37 H 0.092 0.908
38 H 0.096 0.904
39 H 0.113 0.887
40 H 0.070 0.930
41 H 0.118 0.882
42 H 0.075 0.925
43 H 0.070 0.930
44 H 0.079 0.921
45 H 0.035 0.965
46 H 0.073 0.927
Dipole moment (debyes) X Y Z Total
from point charges -5.674 -16.309 11.913 20.978
hybrid contribution 0.309 1.066 -0.024 1.110
sum -5.365 -15.243 11.888 20.061
Atomic orbital electron populations
1.70037 1.05249 1.25357 1.54113 1.25047 0.95299 0.98413 1.00953
0.86240 0.79401 0.83980 0.77268 1.20262 1.21724 1.21578 1.19229
0.92533 0.84827 1.41487 0.91702 1.44049 1.35986 1.01558 1.49959
1.20763 0.88659 0.98190 0.87887 1.22261 1.00026 0.95319 0.99851
1.21312 0.99376 0.95239 0.95041 1.21576 0.85939 0.99311 0.93210
1.46151 1.14938 1.45932 1.30384 1.20385 0.89829 0.79036 0.80523
1.90694 1.35742 1.47275 1.68291 1.22035 0.94326 1.02600 0.97729
0.87520 1.21396 0.97129 0.99220 0.96203 1.22236 0.95681 1.02709
0.98829 1.22646 0.99684 0.91389 0.88303 1.87979 1.32972 1.62342
1.46149 1.22518 0.84456 1.00846 0.92718 1.21988 0.96596 0.99232
0.98639 1.20887 0.97617 0.86877 0.92662 0.93718 0.89524 0.96496
0.93613 0.92533 0.91287 0.91947 0.91632 0.76319 0.90951 0.90635
0.90835 0.90438 0.88664 0.93011 0.88151 0.92478 0.92960 0.92085
0.96489 0.92731
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.90 -25.89 11.20 55.49 0.62 -25.27 16
2 C 0.00 0.04 4.92 -17.43 -0.09 -0.05 16
3 Si 0.90 21.56 29.59 -169.99 -5.03 16.53 16
4 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16
5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16
6 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16
7 C -0.25 -6.82 9.58 -15.06 -0.14 -6.97 16
8 H 0.07 1.74 7.88 -52.49 -0.41 1.33 16
9 N -0.59 -14.53 2.99 -172.32 -0.52 -15.04 16
10 C 0.17 3.91 5.31 -3.71 -0.02 3.89 16
11 C -0.14 -2.39 5.25 -26.61 -0.14 -2.53 16
12 C -0.09 -1.39 2.19 -90.59 -0.20 -1.59 16
13 C 0.12 1.69 5.06 -4.04 -0.02 1.67 16
14 N -0.72 -8.68 5.17 -60.29 -0.31 -8.99 16
15 C 0.52 6.55 7.16 -10.99 -0.08 6.47 16
16 O -0.54 -8.87 15.97 5.55 0.09 -8.78 16
17 C -0.15 -1.41 2.73 -91.63 -0.25 -1.66 16
18 H 0.11 0.96 8.14 -51.93 -0.42 0.54 16
19 C -0.10 -0.94 4.63 -26.54 -0.12 -1.07 16
20 C -0.16 -1.12 6.13 -26.59 -0.16 -1.29 16
21 C 0.06 0.42 6.84 37.20 0.25 0.67 16
22 O -0.38 -3.69 10.77 -35.23 -0.38 -4.07 16
23 C 0.07 0.65 6.00 37.20 0.22 0.87 16
24 C -0.12 -2.06 5.36 -26.61 -0.14 -2.20 16
25 C 0.15 2.97 6.52 -3.71 -0.02 2.95 16
26 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16
27 H 0.09 2.26 6.06 -51.93 -0.31 1.94 16
28 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16
29 H 0.05 0.70 7.15 -51.93 -0.37 0.33 16
30 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16
31 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16
32 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16
33 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16
34 H 0.40 4.13 7.12 -40.82 -0.29 3.84 16
35 H 0.07 0.73 8.03 -51.93 -0.42 0.31 16
36 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16
37 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16
38 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16
39 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16
40 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16
41 H 0.10 0.80 7.65 -51.93 -0.40 0.40 16
42 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16
43 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16
44 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16
45 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16
46 H 0.05 1.10 7.93 -51.93 -0.41 0.68 16
LS Contribution 356.95 15.07 5.38 5.38
Total: -1.00 -31.39 356.95 -9.15 -40.54
By element:
Atomic # 1 Polarization: 8.63 SS G_CDS: -8.09 Total: 0.53 kcal
Atomic # 6 Polarization: 0.08 SS G_CDS: -0.91 Total: -0.84 kcal
Atomic # 7 Polarization: -49.10 SS G_CDS: -0.21 Total: -49.30 kcal
Atomic # 8 Polarization: -12.56 SS G_CDS: -0.29 Total: -12.85 kcal
Atomic # 14 Polarization: 21.56 SS G_CDS: -5.03 Total: 16.53 kcal
Total LS contribution 5.38 Total: 5.38 kcal
Total: -31.39 -9.15 -40.54 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000078997254.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -44.926 kcal
(2) G-P(sol) polarization free energy of solvation -31.390 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.316 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.151 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.540 kcal
(6) G-S(sol) free energy of system = (1) + (5) -85.466 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.65 seconds