Wall clock time and date at job start Tue Mar 31 2020 03:28:53
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31621 * 1
3 3 Si 1.86800 * 119.99894 * 2 1
4 4 H 1.48504 * 109.46788 * 179.97438 * 3 2 1
5 5 H 1.48499 * 109.47041 * 299.99656 * 3 2 1
6 6 H 1.48497 * 109.47258 * 59.99785 * 3 2 1
7 7 C 1.38815 * 119.99984 * 179.97438 * 2 1 3
8 8 H 1.08001 * 119.99853 * 163.17555 * 7 2 1
9 9 N 1.36933 * 119.99826 * 343.17890 * 7 2 1
10 10 C 1.46923 * 120.63142 * 331.58665 * 9 7 2
11 11 C 1.53197 * 108.77587 * 233.88375 * 10 9 7
12 12 C 1.53031 * 109.31337 * 305.36720 * 11 10 9
13 13 C 1.53001 * 109.44880 * 181.37778 * 12 11 10
14 14 N 1.46505 * 109.47363 * 64.93695 * 13 12 11
15 15 C 1.34769 * 120.00170 * 179.97438 * 14 13 12
16 16 O 1.21286 * 119.99985 * 359.97438 * 15 14 13
17 17 C 1.50703 * 119.99983 * 180.02562 * 15 14 13
18 18 H 1.09002 * 109.52051 * 299.99669 * 17 15 14
19 19 C 1.53180 * 109.51948 * 179.87382 * 17 15 14
20 20 C 1.53191 * 109.02803 * 183.17497 * 19 17 15
21 21 C 1.53084 * 109.21288 * 56.88691 * 20 19 17
22 22 O 1.42908 * 109.41783 * 302.42353 * 21 20 19
23 23 C 1.42900 * 114.09493 * 61.15790 * 22 21 20
24 24 C 1.53033 * 109.54059 * 61.36357 * 12 11 10
25 25 C 1.46930 * 120.63005 * 151.86766 * 9 7 2
26 26 H 0.97002 * 120.00123 * 0.02562 * 1 2 3
27 27 H 1.08999 * 109.59186 * 353.67075 * 10 9 7
28 28 H 1.08997 * 109.58930 * 114.09788 * 10 9 7
29 29 H 1.08998 * 109.49661 * 185.40909 * 11 10 9
30 30 H 1.09005 * 109.52101 * 65.33305 * 11 10 9
31 31 H 1.09007 * 109.45825 * 301.34055 * 12 11 10
32 32 H 1.09001 * 109.47087 * 184.93785 * 13 12 11
33 33 H 1.08996 * 109.47081 * 304.93436 * 13 12 11
34 34 H 0.96999 * 119.99796 * 0.02562 * 14 13 12
35 35 H 1.08992 * 109.54739 * 302.97957 * 19 17 15
36 36 H 1.09005 * 109.54116 * 63.24864 * 19 17 15
37 37 H 1.09006 * 109.46988 * 296.98258 * 20 19 17
38 38 H 1.09003 * 109.57212 * 176.85824 * 20 19 17
39 39 H 1.09003 * 109.47878 * 182.43899 * 21 20 19
40 40 H 1.09000 * 109.48518 * 62.40852 * 21 20 19
41 41 H 1.09004 * 109.47587 * 178.86091 * 23 22 21
42 42 H 1.09005 * 109.47911 * 58.82808 * 23 22 21
43 43 H 1.09004 * 109.50103 * 178.68363 * 24 12 11
44 44 H 1.09000 * 109.50172 * 58.58297 * 24 12 11
45 45 H 1.08998 * 109.58579 * 245.89878 * 25 9 7
46 46 H 1.08997 * 109.58590 * 6.32998 * 25 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2502 1.6178 0.0000
4 1 3.7102 1.3463 0.0006
5 1 1.8915 2.3964 -1.2125
6 1 1.8914 2.3965 1.2124
7 6 2.0103 -1.2022 0.0005
8 1 3.0556 -1.2223 -0.2702
9 7 1.3695 -2.3625 0.3442
10 6 0.2276 -2.3416 1.2685
11 6 0.5037 -3.3189 2.4155
12 6 0.8198 -4.7005 1.8382
13 6 1.0624 -5.6872 2.9821
14 7 -0.1741 -5.8595 3.7489
15 6 -0.1984 -6.6890 4.8107
16 8 0.8032 -7.2933 5.1313
17 6 -1.4704 -6.8667 5.5991
18 1 -1.7820 -5.9060 6.0091
19 6 -1.2298 -7.8573 6.7425
20 6 -2.5481 -8.0903 7.4872
21 6 -3.6044 -8.5886 6.4977
22 8 -3.7566 -7.6344 5.4447
23 6 -2.5684 -7.4123 4.6825
24 6 2.0730 -4.6154 0.9640
25 6 1.8147 -3.6528 -0.1995
26 1 -0.4850 0.8401 -0.0004
27 1 0.0995 -1.3357 1.6685
28 1 -0.6761 -2.6446 0.7398
29 1 -0.3752 -3.3849 3.0567
30 1 1.3539 -2.9651 2.9988
31 1 -0.0211 -5.0431 1.2352
32 1 1.3731 -6.6485 2.5729
33 1 1.8443 -5.3008 3.6356
34 1 -0.9754 -5.3771 3.4918
35 1 -0.8695 -8.8024 6.3364
36 1 -0.4891 -7.4481 7.4296
37 1 -2.8820 -7.1547 7.9361
38 1 -2.3995 -8.8363 8.2679
39 1 -4.5559 -8.7144 7.0144
40 1 -3.2887 -9.5443 6.0793
41 1 -2.7736 -6.6908 3.8916
42 1 -2.2390 -8.3527 4.2404
43 1 2.3110 -5.6043 0.5720
44 1 2.9086 -4.2491 1.5604
45 1 1.0404 -4.0628 -0.8479
46 1 2.7338 -3.5121 -0.7682
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000078997254.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:28:53
Heat of formation + Delta-G solvation = -105.679508 kcal
Electronic energy + Delta-G solvation = -24504.146848 eV
Core-core repulsion = 21006.359412 eV
Total energy + Delta-G solvation = -3497.787436 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 296.189 amu
Computer time = 0.58 seconds
Orbital eigenvalues (eV)
-41.40622 -39.83297 -39.15090 -36.43529 -34.65791 -34.52008 -32.79673 -31.92162
-31.50618 -28.46605 -26.24609 -25.81141 -24.95303 -23.83700 -22.69763 -21.88997
-21.01138 -20.56563 -18.76571 -18.29684 -17.32706 -17.24726 -16.82781 -16.58522
-16.27048 -15.78325 -15.62199 -15.31366 -15.19066 -14.92279 -14.64039 -14.62444
-14.08569 -13.92111 -13.81995 -13.51387 -13.33409 -13.06555 -12.84994 -12.60015
-12.56607 -12.27795 -12.14188 -11.95297 -11.90265 -11.84160 -11.60227 -11.40884
-11.23959 -11.12638 -10.87608 -10.53933 -10.49936 -10.09131 -8.65837 -7.87329
-5.32054 1.44870 1.47337 1.54961 1.57324 2.15341 2.51061 2.88763
3.27054 3.56293 3.71885 3.75294 3.77496 3.86098 3.95894 3.98253
4.06962 4.14743 4.26338 4.44509 4.53508 4.55071 4.61702 4.68823
4.70944 4.74575 4.77721 4.82251 4.92101 4.93555 5.03971 5.04816
5.11774 5.17765 5.25212 5.29806 5.31134 5.41798 5.42722 5.56588
5.67033 5.80128 6.16025 6.40544 6.50588 7.16606 7.18053 7.88712
8.39066 9.18746
Molecular weight = 296.19amu
Principal moments of inertia in cm(-1)
A = 0.026474 B = 0.002882 C = 0.002767
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1057.380042 B = 9713.441306 C =10117.276101
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.933 5.933
2 C -0.051 4.051
3 Si 0.963 3.037
4 H -0.269 1.269
5 H -0.292 1.292
6 H -0.290 1.290
7 C -0.261 4.261
8 H 0.063 0.937
9 N -0.613 5.613
10 C 0.176 3.824
11 C -0.121 4.121
12 C -0.079 4.079
13 C 0.135 3.865
14 N -0.716 5.716
15 C 0.518 3.482
16 O -0.581 6.581
17 C -0.138 4.138
18 H 0.117 0.883
19 C -0.102 4.102
20 C -0.150 4.150
21 C 0.050 3.950
22 O -0.391 6.391
23 C 0.074 3.926
24 C -0.116 4.116
25 C 0.141 3.859
26 H 0.249 0.751
27 H 0.049 0.951
28 H 0.001 0.999
29 H 0.071 0.929
30 H 0.043 0.957
31 H 0.079 0.921
32 H 0.069 0.931
33 H 0.053 0.947
34 H 0.412 0.588
35 H 0.062 0.938
36 H 0.065 0.935
37 H 0.075 0.925
38 H 0.093 0.907
39 H 0.112 0.888
40 H 0.057 0.943
41 H 0.111 0.889
42 H 0.056 0.944
43 H 0.084 0.916
44 H 0.053 0.947
45 H 0.018 0.982
46 H 0.051 0.949
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.482 -17.385 12.595 22.426
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.579 5.579
2 C -0.246 4.246
3 Si 0.792 3.208
4 H -0.193 1.193
5 H -0.219 1.219
6 H -0.217 1.217
7 C -0.392 4.392
8 H 0.081 0.919
9 N -0.337 5.337
10 C 0.050 3.950
11 C -0.160 4.160
12 C -0.098 4.098
13 C 0.011 3.989
14 N -0.368 5.368
15 C 0.305 3.695
16 O -0.461 6.461
17 C -0.160 4.160
18 H 0.135 0.865
19 C -0.140 4.140
20 C -0.187 4.187
21 C -0.026 4.026
22 O -0.310 6.310
23 C -0.003 4.003
24 C -0.155 4.155
25 C 0.015 3.985
26 H 0.059 0.941
27 H 0.068 0.932
28 H 0.019 0.981
29 H 0.089 0.911
30 H 0.062 0.938
31 H 0.097 0.903
32 H 0.088 0.912
33 H 0.072 0.928
34 H 0.249 0.751
35 H 0.080 0.920
36 H 0.084 0.916
37 H 0.093 0.907
38 H 0.112 0.888
39 H 0.130 0.870
40 H 0.075 0.925
41 H 0.129 0.871
42 H 0.075 0.925
43 H 0.102 0.898
44 H 0.072 0.928
45 H 0.036 0.964
46 H 0.070 0.930
Dipole moment (debyes) X Y Z Total
from point charges -6.023 -17.585 12.750 22.541
hybrid contribution 0.417 1.415 -0.318 1.509
sum -5.606 -16.170 12.432 21.153
Atomic orbital electron populations
1.70175 1.06504 1.25688 1.55529 1.25758 0.96074 1.01334 1.01428
0.85267 0.78608 0.80139 0.76803 1.19328 1.21869 1.21680 1.19523
0.92710 0.86213 1.40734 0.91938 1.44340 1.36172 1.02337 1.50821
1.20594 0.87823 0.97566 0.88974 1.22046 1.00638 0.95350 0.97965
1.21165 0.99163 0.94003 0.95438 1.21311 0.86337 0.98860 0.92377
1.46077 1.14796 1.45815 1.30075 1.20846 0.90233 0.78136 0.80257
1.90680 1.37342 1.48789 1.69305 1.22026 0.92982 1.03331 0.97619
0.86502 1.21397 0.98107 0.98498 0.96042 1.22203 0.94271 1.03356
0.98903 1.22843 1.00669 0.91137 0.87950 1.87964 1.33204 1.62993
1.46809 1.22536 0.84012 1.01121 0.92667 1.21860 0.96839 0.99607
0.97190 1.21052 0.97263 0.85951 0.94200 0.94143 0.93222 0.98103
0.91050 0.93788 0.90285 0.91224 0.92848 0.75076 0.91962 0.91645
0.90651 0.88803 0.86953 0.92513 0.87081 0.92537 0.89761 0.92837
0.96439 0.93042
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -54.71 11.20 21.65 0.24 -54.47 16
2 C -0.05 -2.82 4.92 84.86 0.42 -2.40 16
3 Si 0.96 44.92 29.59 68.60 2.03 46.95 16
4 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16
5 H -0.29 -13.57 7.11 99.48 0.71 -12.87 16
6 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16
7 C -0.26 -14.38 9.58 84.03 0.81 -13.57 16
8 H 0.06 3.39 7.88 -2.91 -0.02 3.36 16
9 N -0.61 -30.27 2.99 -699.09 -2.09 -32.36 16
10 C 0.18 8.15 5.31 86.36 0.46 8.61 16
11 C -0.12 -4.15 5.25 30.67 0.16 -3.99 16
12 C -0.08 -2.24 2.19 -10.77 -0.02 -2.26 16
13 C 0.13 3.41 5.06 86.38 0.44 3.84 16
14 N -0.72 -15.60 5.17 -463.05 -2.40 -18.00 16
15 C 0.52 12.31 7.16 87.66 0.63 12.94 16
16 O -0.58 -18.44 15.97 -3.05 -0.05 -18.49 16
17 C -0.14 -2.44 2.73 -11.45 -0.03 -2.48 16
18 H 0.12 1.86 8.14 -2.39 -0.02 1.84 16
19 C -0.10 -1.77 4.63 30.72 0.14 -1.63 16
20 C -0.15 -1.83 6.13 30.69 0.19 -1.64 16
21 C 0.05 0.63 6.84 72.01 0.49 1.12 16
22 O -0.39 -6.81 10.77 -148.98 -1.60 -8.42 16
23 C 0.07 1.18 6.00 72.01 0.43 1.61 16
24 C -0.12 -3.58 5.36 30.67 0.16 -3.42 16
25 C 0.14 5.62 6.52 86.36 0.56 6.18 16
26 H 0.25 14.15 8.31 -92.71 -0.77 13.38 16
27 H 0.05 2.66 6.06 -2.39 -0.01 2.64 16
28 H 0.00 0.04 8.14 -2.39 -0.02 0.02 16
29 H 0.07 2.07 7.15 -2.39 -0.02 2.05 16
30 H 0.04 1.63 8.14 -2.38 -0.02 1.61 16
31 H 0.08 2.16 8.14 -2.38 -0.02 2.14 16
32 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16
33 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16
34 H 0.41 7.34 7.12 -92.71 -0.66 6.68 16
35 H 0.06 1.19 8.03 -2.39 -0.02 1.18 16
36 H 0.06 1.25 8.14 -2.38 -0.02 1.23 16
37 H 0.07 0.91 8.14 -2.38 -0.02 0.90 16
38 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16
39 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16
40 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16
41 H 0.11 1.49 7.65 -2.38 -0.02 1.47 16
42 H 0.06 0.90 8.14 -2.38 -0.02 0.88 16
43 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16
44 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16
45 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16
46 H 0.05 2.04 7.93 -2.39 -0.02 2.02 16
Total: -1.00 -68.46 356.95 1.25 -67.21
By element:
Atomic # 1 Polarization: 14.39 SS G_CDS: 0.29 Total: 14.68 kcal
Atomic # 6 Polarization: -1.93 SS G_CDS: 4.83 Total: 2.90 kcal
Atomic # 7 Polarization: -100.59 SS G_CDS: -4.25 Total: -104.83 kcal
Atomic # 8 Polarization: -25.25 SS G_CDS: -1.65 Total: -26.91 kcal
Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.95 kcal
Total: -68.46 1.25 -67.21 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000078997254.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -38.469 kcal
(2) G-P(sol) polarization free energy of solvation -68.464 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.934 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.254 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.210 kcal
(6) G-S(sol) free energy of system = (1) + (5) -105.680 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.58 seconds