Wall clock time and date at job start Tue Mar 31 2020 03:21:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86797 * 119.99986 * 2 1 4 4 H 1.48501 * 109.46831 * 240.00609 * 3 2 1 5 5 H 1.48496 * 109.47242 * 0.02562 * 3 2 1 6 6 H 1.48490 * 109.46914 * 120.00477 * 3 2 1 7 7 C 1.37878 * 119.99480 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99431 * 179.71878 * 7 2 1 9 9 C 1.50697 * 120.00498 * 359.97438 * 7 2 1 10 10 N 1.46894 * 109.47407 * 179.72381 * 9 7 2 11 11 C 1.46897 * 111.00287 * 189.99890 * 10 9 7 12 12 C 1.53005 * 109.47178 * 74.77086 * 11 10 9 13 13 C 1.50694 * 109.46959 * 174.86209 * 12 11 10 14 14 O 1.21284 * 120.00264 * 359.97438 * 13 12 11 15 15 N 1.34779 * 119.99796 * 180.02562 * 13 12 11 16 16 C 1.47145 * 120.98385 * 359.72102 * 15 13 12 17 17 C 1.53715 * 108.16690 * 129.42917 * 16 15 13 18 18 O 1.42963 * 109.14340 * 52.53675 * 17 16 15 19 19 C 1.42957 * 114.16808 * 297.29169 * 18 17 16 20 20 C 1.47154 * 120.98286 * 179.97438 * 15 13 12 21 21 C 1.46901 * 111.00007 * 66.04494 * 10 9 7 22 22 C 1.53002 * 109.47338 * 196.08165 * 21 10 9 23 23 C 1.53005 * 117.49692 * 243.85656 * 22 21 10 24 24 C 1.52997 * 117.50019 * 175.23089 * 22 21 10 25 25 H 0.97002 * 120.00218 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.46894 * 299.72837 * 9 7 2 27 27 H 1.08998 * 109.47080 * 59.72251 * 9 7 2 28 28 H 1.09006 * 109.47148 * 194.77174 * 11 10 9 29 29 H 1.08998 * 109.47147 * 314.76958 * 11 10 9 30 30 H 1.08994 * 109.47035 * 294.86361 * 12 11 10 31 31 H 1.09003 * 109.46848 * 54.86456 * 12 11 10 32 32 H 1.08996 * 109.68222 * 249.21131 * 16 15 13 33 33 H 1.09001 * 109.68164 * 9.76163 * 16 15 13 34 34 H 1.08999 * 109.65413 * 292.57361 * 17 16 15 35 35 H 1.09003 * 109.48764 * 172.40015 * 17 16 15 36 36 H 1.09004 * 109.51481 * 302.65371 * 19 18 17 37 37 H 1.09000 * 109.55495 * 182.53001 * 19 18 17 38 38 H 1.09001 * 109.67978 * 350.23439 * 20 15 13 39 39 H 1.08999 * 109.68058 * 110.78705 * 20 15 13 40 40 H 1.09004 * 109.46975 * 316.07540 * 21 10 9 41 41 H 1.08998 * 109.47100 * 76.07735 * 21 10 9 42 42 H 1.08999 * 115.55064 * 29.55089 * 22 21 10 43 43 H 1.09003 * 117.49386 * 359.97438 * 23 22 21 44 44 H 1.08992 * 117.50106 * 145.01738 * 23 22 21 45 45 H 1.09000 * 117.49949 * 214.96985 * 24 22 21 46 46 H 1.09000 * 117.50162 * 359.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1028 1.6964 -1.2126 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0051 9 6 1.2510 -2.4992 -0.0005 10 7 2.2055 -3.6157 -0.0078 11 6 1.5199 -4.8929 -0.2462 12 6 1.1277 -4.9936 -1.7217 13 6 0.5385 -6.3538 -1.9930 14 8 0.4421 -7.1631 -1.0949 15 7 0.1195 -6.6712 -3.2341 16 6 0.2215 -5.7043 -4.3385 17 6 0.9086 -6.4014 -5.5238 18 8 0.2230 -7.6225 -5.8111 19 6 0.2561 -8.5767 -4.7470 20 6 -0.4587 -7.9932 -3.5234 21 6 2.9765 -3.6574 1.2419 22 6 4.2065 -4.5475 1.0529 23 6 4.2932 -5.8210 1.8966 24 6 5.2026 -4.6314 2.2112 25 1 -0.4850 0.8400 0.0004 26 1 0.6284 -2.5592 0.8921 27 1 0.6203 -2.5546 -0.8878 28 1 2.1867 -5.7164 0.0096 29 1 0.6240 -4.9453 0.3723 30 1 0.3908 -4.2252 -1.9550 31 1 2.0116 -4.8500 -2.3432 32 1 -0.7753 -5.3743 -4.6307 33 1 0.8146 -4.8464 -4.0217 34 1 1.9465 -6.6174 -5.2705 35 1 0.8749 -5.7506 -6.3976 36 1 1.2916 -8.8007 -4.4910 37 1 -0.2473 -9.4910 -5.0611 38 1 -0.3162 -8.6516 -2.6665 39 1 -1.5230 -7.8900 -3.7348 40 1 3.2951 -2.6489 1.5060 41 1 2.3539 -4.0624 2.0396 42 1 4.6078 -4.5862 0.0402 43 1 3.4741 -6.0243 2.5865 44 1 4.7515 -6.6977 1.4390 45 1 6.2592 -4.7256 1.9606 46 1 4.9819 -4.0521 3.1077 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081043458.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:21:49 Heat of formation + Delta-G solvation = -50.043963 kcal Electronic energy + Delta-G solvation = -24597.356607 eV Core-core repulsion = 21101.981710 eV Total energy + Delta-G solvation = -3495.374898 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.33728 -38.48530 -37.70326 -35.55911 -34.79786 -32.69105 -31.89927 -30.53987 -27.97604 -27.40805 -25.49738 -24.26753 -23.16972 -22.14263 -21.84782 -20.55914 -19.61361 -18.98218 -17.34674 -16.60144 -16.47632 -15.92268 -15.79913 -15.32447 -15.24397 -15.00240 -14.83280 -14.17204 -13.95062 -13.77832 -13.64088 -13.00971 -12.70998 -12.65399 -12.24513 -12.01294 -11.75248 -11.68089 -11.58377 -11.28039 -11.13003 -10.94264 -10.92094 -10.70380 -10.68337 -10.39814 -10.38652 -10.09800 -9.65448 -9.59336 -9.45335 -9.16085 -8.66608 -8.44625 -7.27387 -6.04694 -4.06045 2.73744 2.81826 3.31911 3.36364 3.39059 3.56579 4.16445 4.38868 4.48163 4.54485 4.77752 4.81833 4.91542 5.00398 5.08862 5.22824 5.25757 5.29868 5.31825 5.37066 5.42488 5.46639 5.56181 5.57093 5.69746 5.76694 5.88160 5.91948 6.07473 6.16181 6.28373 6.33732 6.38152 6.38856 6.46951 6.60233 6.82072 6.83956 7.25890 7.30511 7.35607 7.79137 8.06508 8.20311 8.22876 8.53687 9.02081 9.58374 11.06009 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.011919 B = 0.004195 C = 0.003368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2348.653545 B = 6672.392147 C = 8310.680760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.056 3.944 3 Si 0.896 3.104 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.508 4.508 8 H 0.064 0.936 9 C 0.191 3.809 10 N -0.536 5.536 11 C 0.073 3.927 12 C -0.131 4.131 13 C 0.522 3.478 14 O -0.542 6.542 15 N -0.623 5.623 16 C 0.071 3.929 17 C 0.047 3.953 18 O -0.382 6.382 19 C 0.049 3.951 20 C 0.076 3.924 21 C 0.094 3.906 22 C -0.133 4.133 23 C -0.190 4.190 24 C -0.184 4.184 25 H 0.262 0.738 26 H -0.010 1.010 27 H 0.031 0.969 28 H 0.071 0.929 29 H 0.029 0.971 30 H 0.098 0.902 31 H 0.099 0.901 32 H 0.079 0.921 33 H 0.104 0.896 34 H 0.058 0.942 35 H 0.107 0.893 36 H 0.055 0.945 37 H 0.104 0.896 38 H 0.100 0.900 39 H 0.073 0.927 40 H 0.091 0.909 41 H 0.021 0.979 42 H 0.107 0.893 43 H 0.088 0.912 44 H 0.086 0.914 45 H 0.088 0.912 46 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.903 -14.025 -7.958 16.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.145 4.145 3 Si 0.724 3.276 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.547 4.547 8 H 0.082 0.918 9 C 0.066 3.934 10 N -0.260 5.260 11 C -0.056 4.056 12 C -0.171 4.171 13 C 0.312 3.688 14 O -0.418 6.418 15 N -0.359 5.359 16 C -0.053 4.053 17 C -0.030 4.030 18 O -0.300 6.300 19 C -0.029 4.029 20 C -0.047 4.047 21 C -0.034 4.034 22 C -0.152 4.152 23 C -0.227 4.227 24 C -0.221 4.221 25 H 0.071 0.929 26 H 0.008 0.992 27 H 0.049 0.951 28 H 0.089 0.911 29 H 0.048 0.952 30 H 0.116 0.884 31 H 0.117 0.883 32 H 0.097 0.903 33 H 0.122 0.878 34 H 0.076 0.924 35 H 0.125 0.875 36 H 0.073 0.927 37 H 0.122 0.878 38 H 0.118 0.882 39 H 0.091 0.909 40 H 0.109 0.891 41 H 0.040 0.960 42 H 0.125 0.875 43 H 0.107 0.893 44 H 0.104 0.896 45 H 0.106 0.894 46 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 2.921 -14.274 -8.013 16.628 hybrid contribution -0.151 0.909 0.810 1.227 sum 2.771 -13.364 -7.203 15.433 Atomic orbital electron populations 1.69950 1.06057 1.26879 1.50934 1.24979 0.94820 0.99247 0.95447 0.86585 0.79453 0.82850 0.78674 1.20172 1.21418 1.20285 1.21139 0.93506 0.89908 1.50117 0.91807 1.19760 0.90128 0.87414 0.96073 1.62005 1.27510 1.02643 1.33870 1.21698 0.97582 0.93497 0.92851 1.21660 1.02280 0.92781 1.00410 1.21082 0.76661 0.90100 0.81004 1.90660 1.55868 1.51765 1.43554 1.48198 1.63320 1.14984 1.09412 1.22575 1.02720 0.92702 0.87260 1.23087 0.95376 0.86307 0.98264 1.87950 1.76347 1.26409 1.39328 1.22968 1.00486 0.92095 0.87308 1.22222 0.97850 0.85487 0.99124 1.21547 0.91809 0.99636 0.90455 1.22441 0.98536 0.98139 0.96051 1.23017 1.02747 0.92510 1.04418 1.22898 0.96260 1.02352 1.00635 0.92884 0.99214 0.95101 0.91076 0.95225 0.88413 0.88279 0.90309 0.87786 0.92411 0.87462 0.92660 0.87792 0.88181 0.90907 0.89113 0.96046 0.87493 0.89316 0.89567 0.89358 0.89094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.09 13.29 55.43 0.74 -25.35 16 2 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 3 Si 0.90 21.15 29.54 -169.99 -5.02 16.13 16 4 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.51 -13.76 8.28 -34.44 -0.29 -14.04 16 8 H 0.06 1.71 7.26 -52.49 -0.38 1.33 16 9 C 0.19 4.80 4.55 -4.98 -0.02 4.78 16 10 N -0.54 -11.17 4.39 -236.07 -1.04 -12.21 16 11 C 0.07 1.36 4.17 -3.82 -0.02 1.35 16 12 C -0.13 -2.10 4.09 -27.88 -0.11 -2.22 16 13 C 0.52 8.18 7.71 -10.99 -0.08 8.10 16 14 O -0.54 -10.13 15.39 5.55 0.09 -10.04 16 15 N -0.62 -7.88 3.01 -172.05 -0.52 -8.40 16 16 C 0.07 0.72 6.57 -3.32 -0.02 0.70 16 17 C 0.05 0.42 7.00 37.53 0.26 0.68 16 18 O -0.38 -4.00 10.74 -35.23 -0.38 -4.38 16 19 C 0.05 0.45 6.98 37.29 0.26 0.71 16 20 C 0.08 0.83 6.63 -3.55 -0.02 0.80 16 21 C 0.09 1.82 5.08 -3.82 -0.02 1.80 16 22 C -0.13 -2.15 4.98 -90.62 -0.45 -2.60 16 23 C -0.19 -2.69 10.01 -26.72 -0.27 -2.96 16 24 C -0.18 -2.55 10.25 -26.73 -0.27 -2.82 16 25 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 26 H -0.01 -0.28 8.12 -51.93 -0.42 -0.70 16 27 H 0.03 0.81 6.66 -51.93 -0.35 0.46 16 28 H 0.07 1.30 6.81 -51.93 -0.35 0.95 16 29 H 0.03 0.61 8.01 -51.93 -0.42 0.19 16 30 H 0.10 1.63 6.77 -51.93 -0.35 1.28 16 31 H 0.10 1.45 7.67 -51.93 -0.40 1.05 16 32 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.10 1.02 6.05 -51.93 -0.31 0.71 16 34 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 35 H 0.11 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 37 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.10 1.17 7.08 -51.93 -0.37 0.80 16 39 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.09 1.93 6.59 -51.93 -0.34 1.59 16 41 H 0.02 0.42 7.78 -51.93 -0.40 0.02 16 42 H 0.11 1.76 8.14 -51.93 -0.42 1.33 16 43 H 0.09 1.28 8.03 -51.93 -0.42 0.86 16 44 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 45 H 0.09 1.09 8.14 -51.93 -0.42 0.66 16 46 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 LS Contribution 366.01 15.07 5.52 5.52 Total: -1.00 -31.41 366.01 -9.65 -41.05 By element: Atomic # 1 Polarization: 9.82 SS G_CDS: -7.88 Total: 1.95 kcal Atomic # 6 Polarization: -3.10 SS G_CDS: -1.15 Total: -4.26 kcal Atomic # 7 Polarization: -45.14 SS G_CDS: -0.82 Total: -45.96 kcal Atomic # 8 Polarization: -14.13 SS G_CDS: -0.29 Total: -14.42 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -31.41 -9.65 -41.05 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081043458.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.991 kcal (2) G-P(sol) polarization free energy of solvation -31.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds