Wall clock time and date at job start Tue Mar 31 2020 03:21:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86797 * 119.99986 * 2 1 4 4 H 1.48501 * 109.46831 * 240.00609 * 3 2 1 5 5 H 1.48496 * 109.47242 * 0.02562 * 3 2 1 6 6 H 1.48490 * 109.46914 * 120.00477 * 3 2 1 7 7 C 1.37878 * 119.99480 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99431 * 179.71878 * 7 2 1 9 9 C 1.50697 * 120.00498 * 359.97438 * 7 2 1 10 10 N 1.46894 * 109.47407 * 179.72381 * 9 7 2 11 11 C 1.46897 * 111.00287 * 189.99890 * 10 9 7 12 12 C 1.53005 * 109.47178 * 74.77086 * 11 10 9 13 13 C 1.50694 * 109.46959 * 174.86209 * 12 11 10 14 14 O 1.21284 * 120.00264 * 359.97438 * 13 12 11 15 15 N 1.34779 * 119.99796 * 180.02562 * 13 12 11 16 16 C 1.47145 * 120.98385 * 359.72102 * 15 13 12 17 17 C 1.53715 * 108.16690 * 129.42917 * 16 15 13 18 18 O 1.42963 * 109.14340 * 52.53675 * 17 16 15 19 19 C 1.42957 * 114.16808 * 297.29169 * 18 17 16 20 20 C 1.47154 * 120.98286 * 179.97438 * 15 13 12 21 21 C 1.46901 * 111.00007 * 66.04494 * 10 9 7 22 22 C 1.53002 * 109.47338 * 196.08165 * 21 10 9 23 23 C 1.53005 * 117.49692 * 243.85656 * 22 21 10 24 24 C 1.52997 * 117.50019 * 175.23089 * 22 21 10 25 25 H 0.97002 * 120.00218 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.46894 * 299.72837 * 9 7 2 27 27 H 1.08998 * 109.47080 * 59.72251 * 9 7 2 28 28 H 1.09006 * 109.47148 * 194.77174 * 11 10 9 29 29 H 1.08998 * 109.47147 * 314.76958 * 11 10 9 30 30 H 1.08994 * 109.47035 * 294.86361 * 12 11 10 31 31 H 1.09003 * 109.46848 * 54.86456 * 12 11 10 32 32 H 1.08996 * 109.68222 * 249.21131 * 16 15 13 33 33 H 1.09001 * 109.68164 * 9.76163 * 16 15 13 34 34 H 1.08999 * 109.65413 * 292.57361 * 17 16 15 35 35 H 1.09003 * 109.48764 * 172.40015 * 17 16 15 36 36 H 1.09004 * 109.51481 * 302.65371 * 19 18 17 37 37 H 1.09000 * 109.55495 * 182.53001 * 19 18 17 38 38 H 1.09001 * 109.67978 * 350.23439 * 20 15 13 39 39 H 1.08999 * 109.68058 * 110.78705 * 20 15 13 40 40 H 1.09004 * 109.46975 * 316.07540 * 21 10 9 41 41 H 1.08998 * 109.47100 * 76.07735 * 21 10 9 42 42 H 1.08999 * 115.55064 * 29.55089 * 22 21 10 43 43 H 1.09003 * 117.49386 * 359.97438 * 23 22 21 44 44 H 1.08992 * 117.50106 * 145.01738 * 23 22 21 45 45 H 1.09000 * 117.49949 * 214.96985 * 24 22 21 46 46 H 1.09000 * 117.50162 * 359.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1028 1.6964 -1.2126 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0051 9 6 1.2510 -2.4992 -0.0005 10 7 2.2055 -3.6157 -0.0078 11 6 1.5199 -4.8929 -0.2462 12 6 1.1277 -4.9936 -1.7217 13 6 0.5385 -6.3538 -1.9930 14 8 0.4421 -7.1631 -1.0949 15 7 0.1195 -6.6712 -3.2341 16 6 0.2215 -5.7043 -4.3385 17 6 0.9086 -6.4014 -5.5238 18 8 0.2230 -7.6225 -5.8111 19 6 0.2561 -8.5767 -4.7470 20 6 -0.4587 -7.9932 -3.5234 21 6 2.9765 -3.6574 1.2419 22 6 4.2065 -4.5475 1.0529 23 6 4.2932 -5.8210 1.8966 24 6 5.2026 -4.6314 2.2112 25 1 -0.4850 0.8400 0.0004 26 1 0.6284 -2.5592 0.8921 27 1 0.6203 -2.5546 -0.8878 28 1 2.1867 -5.7164 0.0096 29 1 0.6240 -4.9453 0.3723 30 1 0.3908 -4.2252 -1.9550 31 1 2.0116 -4.8500 -2.3432 32 1 -0.7753 -5.3743 -4.6307 33 1 0.8146 -4.8464 -4.0217 34 1 1.9465 -6.6174 -5.2705 35 1 0.8749 -5.7506 -6.3976 36 1 1.2916 -8.8007 -4.4910 37 1 -0.2473 -9.4910 -5.0611 38 1 -0.3162 -8.6516 -2.6665 39 1 -1.5230 -7.8900 -3.7348 40 1 3.2951 -2.6489 1.5060 41 1 2.3539 -4.0624 2.0396 42 1 4.6078 -4.5862 0.0402 43 1 3.4741 -6.0243 2.5865 44 1 4.7515 -6.6977 1.4390 45 1 6.2592 -4.7256 1.9606 46 1 4.9819 -4.0521 3.1077 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000081043458.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:21:48 Heat of formation + Delta-G solvation = -70.452094 kcal Electronic energy + Delta-G solvation = -24598.241570 eV Core-core repulsion = 21101.981710 eV Total energy + Delta-G solvation = -3496.259861 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.41626 -39.61951 -39.04284 -37.03671 -35.83180 -34.70623 -32.95478 -31.80965 -29.41225 -28.89616 -26.98384 -25.35957 -24.64369 -23.24613 -23.05033 -22.01136 -21.08046 -20.10783 -18.72022 -18.30052 -17.50198 -17.10130 -16.92475 -16.61126 -16.49393 -16.09924 -15.97027 -15.67373 -15.39040 -15.17382 -14.90358 -14.44374 -14.15289 -13.87143 -13.56302 -13.49865 -13.39866 -12.95984 -12.75697 -12.62765 -12.52723 -12.35389 -12.31756 -12.16914 -12.11435 -11.76450 -11.74897 -11.29965 -11.24466 -11.05437 -10.89976 -10.69641 -10.54620 -9.65853 -9.08067 -8.17611 -6.26979 1.44144 1.46335 1.48904 1.54312 1.78250 2.42744 2.86009 2.94099 3.12893 3.18571 3.60814 3.73225 3.92739 3.97167 4.01882 4.09159 4.09574 4.14193 4.19138 4.26059 4.30861 4.47446 4.49528 4.62924 4.66773 4.74663 4.78531 4.80509 4.84157 4.86288 4.91210 4.93459 5.00344 5.06432 5.23681 5.28788 5.30788 5.37296 5.42969 5.68333 6.06820 6.09237 6.18650 6.34635 6.60195 6.88905 7.02267 7.42557 8.93347 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.011919 B = 0.004195 C = 0.003368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2348.653545 B = 6672.392147 C = 8310.680760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.005 3.995 3 Si 0.966 3.034 4 H -0.265 1.265 5 H -0.286 1.286 6 H -0.271 1.271 7 C -0.520 4.520 8 H 0.065 0.935 9 C 0.206 3.794 10 N -0.530 5.530 11 C 0.079 3.921 12 C -0.122 4.122 13 C 0.523 3.477 14 O -0.578 6.578 15 N -0.618 5.618 16 C 0.065 3.935 17 C 0.049 3.951 18 O -0.393 6.393 19 C 0.054 3.946 20 C 0.072 3.928 21 C 0.096 3.904 22 C -0.151 4.151 23 C -0.180 4.180 24 C -0.167 4.167 25 H 0.263 0.737 26 H -0.048 1.048 27 H 0.017 0.983 28 H 0.079 0.921 29 H 0.004 0.996 30 H 0.089 0.911 31 H 0.117 0.883 32 H 0.085 0.915 33 H 0.106 0.894 34 H 0.061 0.939 35 H 0.131 0.869 36 H 0.055 0.945 37 H 0.129 0.871 38 H 0.089 0.911 39 H 0.080 0.920 40 H 0.068 0.932 41 H 0.011 0.989 42 H 0.108 0.892 43 H 0.083 0.917 44 H 0.105 0.895 45 H 0.112 0.888 46 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.651 -14.416 -9.293 17.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.193 4.193 3 Si 0.790 3.210 4 H -0.190 1.190 5 H -0.211 1.211 6 H -0.196 1.196 7 C -0.558 4.558 8 H 0.083 0.917 9 C 0.080 3.920 10 N -0.254 5.254 11 C -0.049 4.049 12 C -0.162 4.162 13 C 0.312 3.688 14 O -0.458 6.458 15 N -0.353 5.353 16 C -0.057 4.057 17 C -0.028 4.028 18 O -0.312 6.312 19 C -0.023 4.023 20 C -0.050 4.050 21 C -0.032 4.032 22 C -0.170 4.170 23 C -0.217 4.217 24 C -0.204 4.204 25 H 0.072 0.928 26 H -0.030 1.030 27 H 0.035 0.965 28 H 0.097 0.903 29 H 0.022 0.978 30 H 0.107 0.893 31 H 0.135 0.865 32 H 0.103 0.897 33 H 0.124 0.876 34 H 0.079 0.921 35 H 0.148 0.852 36 H 0.074 0.926 37 H 0.147 0.853 38 H 0.108 0.892 39 H 0.099 0.901 40 H 0.086 0.914 41 H 0.030 0.970 42 H 0.126 0.874 43 H 0.101 0.899 44 H 0.123 0.877 45 H 0.130 0.870 46 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 4.680 -14.680 -9.388 18.043 hybrid contribution -0.742 0.983 1.226 1.738 sum 3.938 -13.697 -8.162 16.424 Atomic orbital electron populations 1.70084 1.07720 1.27867 1.51843 1.25854 0.95621 1.02977 0.94858 0.85490 0.78173 0.78144 0.79153 1.18986 1.21128 1.19569 1.21410 0.93652 0.90826 1.49915 0.91689 1.19440 0.90138 0.88838 0.93563 1.62022 1.26314 1.02414 1.34645 1.21655 0.96403 0.92464 0.94423 1.21514 1.02828 0.93163 0.98679 1.20889 0.76768 0.89408 0.81717 1.90641 1.57706 1.52587 1.44912 1.48260 1.61916 1.16154 1.08923 1.22799 1.03475 0.92507 0.86960 1.23192 0.95100 0.86104 0.98380 1.87944 1.76569 1.26924 1.39731 1.23029 1.00562 0.92555 0.86142 1.22397 0.98524 0.84396 0.99718 1.21504 0.92948 0.99259 0.89502 1.22220 0.98097 0.99503 0.97170 1.23066 1.02686 0.92604 1.03295 1.23007 0.97019 1.01339 0.99083 0.92777 1.03018 0.96525 0.90271 0.97780 0.89314 0.86460 0.89677 0.87569 0.92073 0.85167 0.92626 0.85289 0.89218 0.90133 0.91411 0.97040 0.87394 0.89870 0.87662 0.86995 0.89076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.40 13.29 21.45 0.28 -55.12 16 2 C 0.00 0.28 5.46 84.65 0.46 0.74 16 3 Si 0.97 43.34 29.54 68.60 2.03 45.37 16 4 H -0.27 -11.37 7.11 99.48 0.71 -10.67 16 5 H -0.29 -12.62 7.11 99.48 0.71 -11.92 16 6 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 7 C -0.52 -28.70 8.28 25.60 0.21 -28.49 16 8 H 0.06 3.51 7.26 -2.91 -0.02 3.49 16 9 C 0.21 10.83 4.55 85.56 0.39 11.22 16 10 N -0.53 -22.78 4.39 -900.80 -3.95 -26.73 16 11 C 0.08 3.07 4.17 86.31 0.36 3.43 16 12 C -0.12 -3.96 4.09 29.85 0.12 -3.83 16 13 C 0.52 16.48 7.71 87.65 0.68 17.15 16 14 O -0.58 -22.03 15.39 -3.04 -0.05 -22.07 16 15 N -0.62 -15.21 3.01 -816.63 -2.46 -17.67 16 16 C 0.06 1.23 6.57 86.50 0.57 1.80 16 17 C 0.05 0.77 7.00 72.22 0.51 1.27 16 18 O -0.39 -7.30 10.74 -148.98 -1.60 -8.90 16 19 C 0.05 0.88 6.98 72.07 0.50 1.38 16 20 C 0.07 1.49 6.63 86.34 0.57 2.06 16 21 C 0.10 3.83 5.08 86.30 0.44 4.27 16 22 C -0.15 -4.76 4.98 -10.79 -0.05 -4.82 16 23 C -0.18 -4.78 10.01 30.60 0.31 -4.47 16 24 C -0.17 -4.27 10.25 30.60 0.31 -3.96 16 25 H 0.26 14.77 8.31 -92.71 -0.77 14.00 16 26 H -0.05 -2.83 8.12 -2.39 -0.02 -2.85 16 27 H 0.02 0.91 6.66 -2.39 -0.02 0.90 16 28 H 0.08 2.94 6.81 -2.38 -0.02 2.92 16 29 H 0.00 0.17 8.01 -2.39 -0.02 0.15 16 30 H 0.09 3.05 6.77 -2.39 -0.02 3.04 16 31 H 0.12 3.35 7.67 -2.39 -0.02 3.33 16 32 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.11 1.97 6.05 -2.39 -0.01 1.96 16 34 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.13 1.44 8.14 -2.39 -0.02 1.42 16 36 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 37 H 0.13 1.43 8.14 -2.39 -0.02 1.41 16 38 H 0.09 2.07 7.08 -2.39 -0.02 2.06 16 39 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 40 H 0.07 2.98 6.59 -2.39 -0.02 2.96 16 41 H 0.01 0.47 7.78 -2.39 -0.02 0.45 16 42 H 0.11 3.40 8.14 -2.39 -0.02 3.38 16 43 H 0.08 2.31 8.03 -2.39 -0.02 2.29 16 44 H 0.11 2.43 8.14 -2.39 -0.02 2.41 16 45 H 0.11 2.37 8.14 -2.39 -0.02 2.35 16 46 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 Total: -1.00 -68.74 366.01 0.57 -68.17 By element: Atomic # 1 Polarization: 18.24 SS G_CDS: 0.94 Total: 19.18 kcal Atomic # 6 Polarization: -7.61 SS G_CDS: 5.38 Total: -2.23 kcal Atomic # 7 Polarization: -93.38 SS G_CDS: -6.13 Total: -99.51 kcal Atomic # 8 Polarization: -29.33 SS G_CDS: -1.65 Total: -30.98 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.37 kcal Total: -68.74 0.57 -68.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081043458.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.285 kcal (2) G-P(sol) polarization free energy of solvation -68.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds