Wall clock time and date at job start Tue Mar 31 2020 03:31:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86804 * 119.99685 * 2 1 4 4 H 1.48497 * 109.46963 * 269.99770 * 3 2 1 5 5 H 1.48490 * 109.47275 * 30.00124 * 3 2 1 6 6 H 1.48497 * 109.46647 * 150.00083 * 3 2 1 7 7 C 1.37880 * 120.00018 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00239 * 0.02562 * 7 2 1 9 9 C 1.50702 * 119.99742 * 179.97438 * 7 2 1 10 10 C 1.52998 * 109.47069 * 180.02562 * 9 7 2 11 11 C 1.50697 * 109.47142 * 180.02562 * 10 9 7 12 12 O 1.21279 * 119.99963 * 359.97438 * 11 10 9 13 13 N 1.34779 * 120.00051 * 180.02562 * 11 10 9 14 14 C 1.47026 * 125.64689 * 0.02562 * 13 11 10 15 15 C 1.54322 * 107.40111 * 178.82878 * 14 13 11 16 16 C 1.55405 * 102.82905 * 337.97548 * 15 14 13 17 17 H 1.09000 * 110.92625 * 277.25645 * 16 15 14 18 18 C 1.52998 * 111.03715 * 153.47079 * 16 15 14 19 19 N 1.46898 * 109.47196 * 71.89100 * 18 16 15 20 20 C 1.47012 * 111.00369 * 199.38490 * 19 18 16 21 21 C 1.53098 * 109.26052 * 177.60516 * 20 19 18 22 22 O 1.43011 * 109.25532 * 56.85135 * 21 20 19 23 23 C 1.43015 * 113.74137 * 301.32690 * 22 21 20 24 24 C 1.47017 * 111.00205 * 75.74965 * 19 18 16 25 25 C 1.47427 * 125.64758 * 179.97438 * 13 11 10 26 26 H 0.96996 * 120.00146 * 359.97438 * 1 2 3 27 27 H 1.09006 * 109.47055 * 60.00081 * 9 7 2 28 28 H 1.08995 * 109.47139 * 300.00349 * 9 7 2 29 29 H 1.09006 * 109.47143 * 60.00101 * 10 9 7 30 30 H 1.09004 * 109.47221 * 300.00220 * 10 9 7 31 31 H 1.08991 * 109.88027 * 298.32576 * 14 13 11 32 32 H 1.08998 * 109.88346 * 59.33532 * 14 13 11 33 33 H 1.08997 * 110.72214 * 96.24257 * 15 14 13 34 34 H 1.09000 * 110.71938 * 219.52372 * 15 14 13 35 35 H 1.09008 * 109.47118 * 191.89094 * 18 16 15 36 36 H 1.09000 * 109.47412 * 311.88526 * 18 16 15 37 37 H 1.08998 * 109.50645 * 297.54321 * 20 19 18 38 38 H 1.09005 * 109.50164 * 57.67254 * 20 19 18 39 39 H 1.08997 * 109.50815 * 296.91686 * 21 20 19 40 40 H 1.08993 * 109.50506 * 176.78340 * 21 20 19 41 41 H 1.08997 * 109.50558 * 298.73868 * 23 22 21 42 42 H 1.09003 * 109.51107 * 178.60911 * 23 22 21 43 43 H 1.09009 * 109.50561 * 302.33210 * 24 19 18 44 44 H 1.09001 * 109.50686 * 62.41220 * 24 19 18 45 45 H 1.08998 * 110.36473 * 323.00119 * 25 13 11 46 46 H 1.08998 * 110.36482 * 85.21811 * 25 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4402 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1940 0.0000 10 6 4.0216 -2.6365 0.0001 11 6 5.5286 -2.6364 0.0001 12 8 6.1349 -1.5861 -0.0004 13 7 6.2025 -3.8036 -0.0003 14 6 5.5963 -5.1431 -0.0013 15 6 6.7474 -6.1705 -0.0316 16 6 7.9297 -5.3472 -0.6140 17 1 7.8806 -5.3117 -1.7023 18 6 9.2736 -5.9097 -0.1466 19 7 9.5321 -7.1870 -0.8244 20 6 10.5401 -7.9739 -0.0991 21 6 10.7348 -9.3185 -0.8047 22 8 11.1056 -9.0873 -2.1664 23 6 10.1460 -8.3243 -2.9028 24 6 9.9453 -6.9696 -2.2185 25 6 7.6697 -3.9486 -0.0008 26 1 -0.4850 0.8400 0.0004 27 1 3.8752 -0.6795 0.8895 28 1 3.8745 -0.6807 -0.8904 29 1 3.6580 -3.1505 -0.8897 30 1 3.6586 -3.1501 0.8903 31 1 5.0001 -5.2807 0.9006 32 1 4.9676 -5.2647 -0.8833 33 1 6.9797 -6.5192 0.9747 34 1 6.4996 -7.0082 -0.6836 35 1 10.0673 -5.2028 -0.3885 36 1 9.2455 -6.0694 0.9313 37 1 11.4848 -7.4303 -0.0845 38 1 10.2020 -8.1447 0.9230 39 1 9.8041 -9.8848 -0.7720 40 1 11.5220 -9.8818 -0.3037 41 1 9.1981 -8.8617 -2.9312 42 1 10.5074 -8.1686 -3.9194 43 1 9.1730 -6.4074 -2.7435 44 1 10.8801 -6.4093 -2.2379 45 1 8.1272 -3.1737 -0.6158 46 1 8.0559 -3.9013 1.0173 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330883618.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:31:03 Heat of formation + Delta-G solvation = -81.574277 kcal Electronic energy + Delta-G solvation = -23985.066528 eV Core-core repulsion = 20488.324373 eV Total energy + Delta-G solvation = -3496.742155 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.24409 -39.58458 -37.64075 -35.92357 -33.48828 -32.27197 -31.61261 -31.12459 -29.63467 -28.06713 -26.19299 -24.50286 -24.23617 -22.92258 -21.12573 -20.73561 -20.34390 -18.72524 -17.26998 -17.11595 -16.55351 -16.22351 -16.12529 -15.61137 -15.45404 -14.99738 -14.96422 -14.38385 -14.14370 -14.03147 -13.76274 -13.29650 -12.92655 -12.81898 -12.65197 -12.45108 -12.33718 -12.08545 -11.83517 -11.64395 -11.44400 -11.32034 -11.18009 -10.97901 -10.93081 -10.72660 -10.14665 -10.08736 -10.02322 -9.76969 -9.23733 -9.15378 -8.83879 -8.50734 -8.45028 -6.02020 -4.00587 3.08597 3.13834 3.33760 3.38708 3.45126 3.46486 3.56513 4.31347 4.36989 4.45897 4.48212 4.51983 4.58014 4.70910 4.78798 4.84068 5.02784 5.06376 5.12264 5.15338 5.21864 5.30007 5.31644 5.33425 5.34634 5.41403 5.43119 5.53540 5.64294 5.75418 5.78304 5.90148 6.04998 6.09398 6.14469 6.45187 6.48455 6.52106 6.70125 6.70985 7.37784 7.44870 7.74264 7.82601 8.50424 8.63816 9.01024 9.61103 11.10789 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.041404 B = 0.002410 C = 0.002375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.103562 B =11616.853578 C =11786.534533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.069 3.931 3 Si 0.877 3.123 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.261 1.261 7 C -0.524 4.524 8 H 0.073 0.927 9 C 0.001 3.999 10 C -0.116 4.116 11 C 0.526 3.474 12 O -0.541 6.541 13 N -0.629 5.629 14 C 0.099 3.901 15 C -0.112 4.112 16 C -0.096 4.096 17 H 0.084 0.916 18 C 0.067 3.933 19 N -0.534 5.534 20 C 0.018 3.982 21 C 0.064 3.936 22 O -0.388 6.388 23 C 0.064 3.936 24 C 0.015 3.985 25 C 0.111 3.889 26 H 0.263 0.737 27 H 0.023 0.977 28 H 0.019 0.981 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.073 0.927 34 H 0.084 0.916 35 H 0.042 0.958 36 H 0.079 0.921 37 H 0.042 0.958 38 H 0.087 0.913 39 H 0.060 0.940 40 H 0.097 0.903 41 H 0.061 0.939 42 H 0.097 0.903 43 H 0.089 0.911 44 H 0.043 0.957 45 H 0.074 0.926 46 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.445 -20.880 -1.721 30.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.133 4.133 3 Si 0.704 3.296 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.185 1.185 7 C -0.562 4.562 8 H 0.091 0.909 9 C -0.037 4.037 10 C -0.156 4.156 11 C 0.317 3.683 12 O -0.417 6.417 13 N -0.365 5.365 14 C -0.025 4.025 15 C -0.150 4.150 16 C -0.115 4.115 17 H 0.103 0.897 18 C -0.061 4.061 19 N -0.259 5.259 20 C -0.111 4.111 21 C -0.013 4.013 22 O -0.306 6.306 23 C -0.013 4.013 24 C -0.113 4.113 25 C -0.013 4.013 26 H 0.073 0.927 27 H 0.042 0.958 28 H 0.037 0.963 29 H 0.103 0.897 30 H 0.103 0.897 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.092 0.908 34 H 0.102 0.898 35 H 0.060 0.940 36 H 0.098 0.902 37 H 0.060 0.940 38 H 0.105 0.895 39 H 0.079 0.921 40 H 0.115 0.885 41 H 0.079 0.921 42 H 0.116 0.884 43 H 0.107 0.893 44 H 0.061 0.939 45 H 0.092 0.908 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 22.287 -20.436 -1.797 30.291 hybrid contribution 0.796 1.443 0.147 1.655 sum 23.083 -18.993 -1.650 29.938 Atomic orbital electron populations 1.69911 1.06274 1.26953 1.51121 1.24973 0.94714 0.99222 0.94351 0.86795 0.80631 0.83394 0.78748 1.20243 1.21433 1.18539 1.21107 0.89240 0.94562 1.51271 0.90925 1.19384 0.96433 0.90232 0.97634 1.21645 0.87632 1.03110 1.03192 1.21293 0.91313 0.81339 0.74345 1.90653 1.70822 1.30676 1.49559 1.48657 1.06310 1.06135 1.75419 1.22053 0.96345 0.81871 1.02188 1.22598 0.93446 0.97143 1.01770 1.22366 0.94297 0.94063 1.00810 0.89736 1.22050 0.95997 0.89294 0.98800 1.62142 1.43343 1.18360 1.02018 1.22803 0.94174 0.95401 0.98688 1.22663 1.01125 0.95364 0.82182 1.87990 1.46045 1.73640 1.22926 1.22673 0.93087 0.90460 0.95115 1.22860 1.00254 0.98219 0.89987 1.22081 0.82361 0.96324 1.00528 0.92728 0.95844 0.96309 0.89716 0.89695 0.91280 0.91277 0.90797 0.89783 0.94010 0.90246 0.93963 0.89474 0.92125 0.88514 0.92090 0.88447 0.89287 0.93878 0.90776 0.91928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.21 13.96 55.43 0.77 -27.43 16 2 C 0.07 2.05 5.47 -17.82 -0.10 1.96 16 3 Si 0.88 22.85 27.47 -169.99 -4.67 18.18 16 4 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 5 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 6 H -0.26 -6.79 6.54 56.52 0.37 -6.42 16 7 C -0.52 -15.19 9.66 -34.44 -0.33 -15.52 16 8 H 0.07 2.19 7.99 -52.49 -0.42 1.77 16 9 C 0.00 0.03 3.33 -27.88 -0.09 -0.07 16 10 C -0.12 -2.34 4.83 -27.89 -0.13 -2.48 16 11 C 0.53 10.16 7.85 -10.99 -0.09 10.07 16 12 O -0.54 -12.53 16.24 5.56 0.09 -12.44 16 13 N -0.63 -9.16 3.33 -170.53 -0.57 -9.73 16 14 C 0.10 1.08 6.48 -3.06 -0.02 1.06 16 15 C -0.11 -0.92 6.38 -24.76 -0.16 -1.08 16 16 C -0.10 -0.82 3.09 -88.34 -0.27 -1.09 16 17 H 0.08 0.76 6.78 -51.93 -0.35 0.41 16 18 C 0.07 0.48 4.45 -3.83 -0.02 0.46 16 19 N -0.53 -3.77 4.59 -234.30 -1.08 -4.85 16 20 C 0.02 0.11 5.60 -3.71 -0.02 0.09 16 21 C 0.06 0.40 7.01 37.21 0.26 0.66 16 22 O -0.39 -3.27 10.83 -35.23 -0.38 -3.65 16 23 C 0.06 0.43 7.01 37.21 0.26 0.69 16 24 C 0.01 0.10 5.47 -3.71 -0.02 0.08 16 25 C 0.11 1.31 6.38 -2.53 -0.02 1.30 16 26 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 27 H 0.02 0.62 7.16 -51.93 -0.37 0.25 16 28 H 0.02 0.49 7.53 -51.93 -0.39 0.10 16 29 H 0.08 1.59 8.14 -51.93 -0.42 1.17 16 30 H 0.08 1.60 8.14 -51.93 -0.42 1.18 16 31 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.07 0.57 7.93 -51.93 -0.41 0.15 16 34 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.04 0.31 7.99 -51.92 -0.41 -0.10 16 36 H 0.08 0.53 7.72 -51.93 -0.40 0.13 16 37 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 38 H 0.09 0.44 8.02 -51.93 -0.42 0.03 16 39 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 40 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.09 0.58 6.75 -51.92 -0.35 0.23 16 44 H 0.04 0.32 8.13 -51.93 -0.42 -0.10 16 45 H 0.07 0.97 8.04 -51.93 -0.42 0.56 16 46 H 0.06 0.71 8.04 -51.93 -0.42 0.29 16 LS Contribution 361.97 15.07 5.45 5.45 Total: -1.00 -34.90 361.97 -9.30 -44.21 By element: Atomic # 1 Polarization: 2.31 SS G_CDS: -8.18 Total: -5.87 kcal Atomic # 6 Polarization: -3.12 SS G_CDS: -0.75 Total: -3.87 kcal Atomic # 7 Polarization: -41.14 SS G_CDS: -0.87 Total: -42.01 kcal Atomic # 8 Polarization: -15.80 SS G_CDS: -0.29 Total: -16.09 kcal Atomic # 14 Polarization: 22.85 SS G_CDS: -4.67 Total: 18.18 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -34.90 -9.30 -44.21 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330883618.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.366 kcal (2) G-P(sol) polarization free energy of solvation -34.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds