Wall clock time and date at job start Tue Mar 31 2020 03:31:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86804 * 119.99685 * 2 1 4 4 H 1.48497 * 109.46963 * 269.99770 * 3 2 1 5 5 H 1.48490 * 109.47275 * 30.00124 * 3 2 1 6 6 H 1.48497 * 109.46647 * 150.00083 * 3 2 1 7 7 C 1.37880 * 120.00018 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00239 * 0.02562 * 7 2 1 9 9 C 1.50702 * 119.99742 * 179.97438 * 7 2 1 10 10 C 1.52998 * 109.47069 * 180.02562 * 9 7 2 11 11 C 1.50697 * 109.47142 * 180.02562 * 10 9 7 12 12 O 1.21279 * 119.99963 * 359.97438 * 11 10 9 13 13 N 1.34779 * 120.00051 * 180.02562 * 11 10 9 14 14 C 1.47026 * 125.64689 * 0.02562 * 13 11 10 15 15 C 1.54322 * 107.40111 * 178.82878 * 14 13 11 16 16 C 1.55405 * 102.82905 * 337.97548 * 15 14 13 17 17 H 1.09000 * 110.92625 * 277.25645 * 16 15 14 18 18 C 1.52998 * 111.03715 * 153.47079 * 16 15 14 19 19 N 1.46898 * 109.47196 * 71.89100 * 18 16 15 20 20 C 1.47012 * 111.00369 * 199.38490 * 19 18 16 21 21 C 1.53098 * 109.26052 * 177.60516 * 20 19 18 22 22 O 1.43011 * 109.25532 * 56.85135 * 21 20 19 23 23 C 1.43015 * 113.74137 * 301.32690 * 22 21 20 24 24 C 1.47017 * 111.00205 * 75.74965 * 19 18 16 25 25 C 1.47427 * 125.64758 * 179.97438 * 13 11 10 26 26 H 0.96996 * 120.00146 * 359.97438 * 1 2 3 27 27 H 1.09006 * 109.47055 * 60.00081 * 9 7 2 28 28 H 1.08995 * 109.47139 * 300.00349 * 9 7 2 29 29 H 1.09006 * 109.47143 * 60.00101 * 10 9 7 30 30 H 1.09004 * 109.47221 * 300.00220 * 10 9 7 31 31 H 1.08991 * 109.88027 * 298.32576 * 14 13 11 32 32 H 1.08998 * 109.88346 * 59.33532 * 14 13 11 33 33 H 1.08997 * 110.72214 * 96.24257 * 15 14 13 34 34 H 1.09000 * 110.71938 * 219.52372 * 15 14 13 35 35 H 1.09008 * 109.47118 * 191.89094 * 18 16 15 36 36 H 1.09000 * 109.47412 * 311.88526 * 18 16 15 37 37 H 1.08998 * 109.50645 * 297.54321 * 20 19 18 38 38 H 1.09005 * 109.50164 * 57.67254 * 20 19 18 39 39 H 1.08997 * 109.50815 * 296.91686 * 21 20 19 40 40 H 1.08993 * 109.50506 * 176.78340 * 21 20 19 41 41 H 1.08997 * 109.50558 * 298.73868 * 23 22 21 42 42 H 1.09003 * 109.51107 * 178.60911 * 23 22 21 43 43 H 1.09009 * 109.50561 * 302.33210 * 24 19 18 44 44 H 1.09001 * 109.50686 * 62.41220 * 24 19 18 45 45 H 1.08998 * 110.36473 * 323.00119 * 25 13 11 46 46 H 1.08998 * 110.36482 * 85.21811 * 25 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4402 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1940 0.0000 10 6 4.0216 -2.6365 0.0001 11 6 5.5286 -2.6364 0.0001 12 8 6.1349 -1.5861 -0.0004 13 7 6.2025 -3.8036 -0.0003 14 6 5.5963 -5.1431 -0.0013 15 6 6.7474 -6.1705 -0.0316 16 6 7.9297 -5.3472 -0.6140 17 1 7.8806 -5.3117 -1.7023 18 6 9.2736 -5.9097 -0.1466 19 7 9.5321 -7.1870 -0.8244 20 6 10.5401 -7.9739 -0.0991 21 6 10.7348 -9.3185 -0.8047 22 8 11.1056 -9.0873 -2.1664 23 6 10.1460 -8.3243 -2.9028 24 6 9.9453 -6.9696 -2.2185 25 6 7.6697 -3.9486 -0.0008 26 1 -0.4850 0.8400 0.0004 27 1 3.8752 -0.6795 0.8895 28 1 3.8745 -0.6807 -0.8904 29 1 3.6580 -3.1505 -0.8897 30 1 3.6586 -3.1501 0.8903 31 1 5.0001 -5.2807 0.9006 32 1 4.9676 -5.2647 -0.8833 33 1 6.9797 -6.5192 0.9747 34 1 6.4996 -7.0082 -0.6836 35 1 10.0673 -5.2028 -0.3885 36 1 9.2455 -6.0694 0.9313 37 1 11.4848 -7.4303 -0.0845 38 1 10.2020 -8.1447 0.9230 39 1 9.8041 -9.8848 -0.7720 40 1 11.5220 -9.8818 -0.3037 41 1 9.1981 -8.8617 -2.9312 42 1 10.5074 -8.1686 -3.9194 43 1 9.1730 -6.4074 -2.7435 44 1 10.8801 -6.4093 -2.2379 45 1 8.1272 -3.1737 -0.6158 46 1 8.0559 -3.9013 1.0173 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330883618.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:31:03 Heat of formation + Delta-G solvation = -106.351111 kcal Electronic energy + Delta-G solvation = -23986.140932 eV Core-core repulsion = 20488.324373 eV Total energy + Delta-G solvation = -3497.816559 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.18911 -40.43762 -38.74654 -36.64253 -35.58036 -33.59434 -32.82748 -32.09289 -30.47785 -29.05925 -27.73418 -25.29584 -24.97362 -23.87042 -22.75971 -21.47622 -21.07444 -20.09511 -19.13211 -17.85172 -17.74916 -17.13910 -17.06717 -16.46459 -16.27525 -16.03059 -15.92737 -15.84819 -15.38477 -14.90759 -14.75034 -14.57729 -14.43803 -13.92249 -13.77990 -13.55582 -13.33163 -13.21837 -12.91738 -12.87997 -12.35985 -12.32281 -12.17176 -12.00527 -11.95488 -11.87003 -11.78122 -11.55503 -11.41930 -11.35284 -10.82156 -10.79465 -10.61581 -9.65728 -9.38486 -8.32845 -6.35833 1.31878 1.33667 1.49102 1.62011 1.99476 2.33806 2.70604 2.99097 3.02458 3.52220 3.66474 3.78003 3.95878 3.98383 4.04414 4.21182 4.24606 4.30011 4.32496 4.34845 4.38011 4.45122 4.49905 4.58956 4.64035 4.70655 4.74807 4.77171 4.85316 4.92005 4.93730 4.95802 5.03540 5.06360 5.17873 5.28740 5.34920 5.41115 5.46162 5.58563 5.94454 5.97698 6.21531 6.21970 6.47582 6.69962 7.17635 7.29451 8.82732 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.041404 B = 0.002410 C = 0.002375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.103562 B =11616.853578 C =11786.534533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C 0.014 3.986 3 Si 0.938 3.062 4 H -0.268 1.268 5 H -0.276 1.276 6 H -0.263 1.263 7 C -0.529 4.529 8 H 0.051 0.949 9 C 0.006 3.994 10 C -0.109 4.109 11 C 0.525 3.475 12 O -0.590 6.590 13 N -0.622 5.622 14 C 0.088 3.912 15 C -0.098 4.098 16 C -0.082 4.082 17 H 0.083 0.917 18 C 0.072 3.928 19 N -0.536 5.536 20 C 0.019 3.981 21 C 0.061 3.939 22 O -0.409 6.409 23 C 0.063 3.937 24 C 0.016 3.984 25 C 0.105 3.895 26 H 0.268 0.732 27 H 0.009 0.991 28 H 0.007 0.993 29 H 0.099 0.901 30 H 0.099 0.901 31 H 0.077 0.923 32 H 0.074 0.926 33 H 0.087 0.913 34 H 0.099 0.901 35 H 0.038 0.962 36 H 0.090 0.910 37 H 0.035 0.965 38 H 0.102 0.898 39 H 0.063 0.937 40 H 0.111 0.889 41 H 0.063 0.937 42 H 0.107 0.893 43 H 0.092 0.908 44 H 0.035 0.965 45 H 0.057 0.943 46 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.806 -22.382 -1.493 32.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.184 4.184 3 Si 0.762 3.238 4 H -0.193 1.193 5 H -0.201 1.201 6 H -0.188 1.188 7 C -0.567 4.567 8 H 0.069 0.931 9 C -0.032 4.032 10 C -0.148 4.148 11 C 0.316 3.684 12 O -0.470 6.470 13 N -0.355 5.355 14 C -0.034 4.034 15 C -0.136 4.136 16 C -0.101 4.101 17 H 0.101 0.899 18 C -0.056 4.056 19 N -0.261 5.261 20 C -0.109 4.109 21 C -0.016 4.016 22 O -0.328 6.328 23 C -0.014 4.014 24 C -0.112 4.112 25 C -0.018 4.018 26 H 0.077 0.923 27 H 0.027 0.973 28 H 0.026 0.974 29 H 0.117 0.883 30 H 0.117 0.883 31 H 0.095 0.905 32 H 0.093 0.907 33 H 0.105 0.895 34 H 0.117 0.883 35 H 0.056 0.944 36 H 0.108 0.892 37 H 0.054 0.946 38 H 0.120 0.880 39 H 0.081 0.919 40 H 0.129 0.871 41 H 0.081 0.919 42 H 0.125 0.875 43 H 0.110 0.890 44 H 0.053 0.947 45 H 0.076 0.924 46 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 23.661 -22.006 -1.570 32.350 hybrid contribution 0.365 1.784 0.077 1.822 sum 24.025 -20.222 -1.493 31.438 Atomic orbital electron populations 1.70016 1.07701 1.28130 1.52384 1.25795 0.95521 1.02805 0.94237 0.85835 0.79197 0.79556 0.79176 1.19329 1.20147 1.18767 1.21397 0.91055 0.93781 1.50449 0.93085 1.19223 0.94108 0.93602 0.96279 1.21442 0.88899 0.99856 1.04616 1.20934 0.90852 0.82060 0.74586 1.90628 1.71417 1.32661 1.52334 1.48595 1.07812 1.06198 1.72929 1.22384 0.97631 0.80467 1.02889 1.22575 0.91702 0.96433 1.02903 1.22242 0.95422 0.91965 1.00504 0.89909 1.21968 0.94867 0.89372 0.99364 1.62142 1.43732 1.18098 1.02081 1.22840 0.93686 0.95077 0.99328 1.22803 1.01819 0.95562 0.81402 1.87962 1.46905 1.73933 1.24043 1.22751 0.93013 0.90152 0.95490 1.22855 0.99938 0.98297 0.90144 1.22278 0.80401 0.97952 1.01129 0.92315 0.97268 0.97421 0.88302 0.88281 0.90487 0.90728 0.89473 0.88257 0.94357 0.89172 0.94626 0.87992 0.91855 0.87129 0.91855 0.87512 0.88981 0.94710 0.92444 0.91029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.32 13.96 21.45 0.30 -59.02 16 2 C 0.01 0.86 5.47 84.66 0.46 1.32 16 3 Si 0.94 47.38 27.47 68.60 1.88 49.27 16 4 H -0.27 -13.10 7.11 99.48 0.71 -12.39 16 5 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 6 H -0.26 -13.31 6.54 99.48 0.65 -12.66 16 7 C -0.53 -31.00 9.66 25.60 0.25 -30.75 16 8 H 0.05 3.13 7.99 -2.91 -0.02 3.11 16 9 C 0.01 0.30 3.33 29.85 0.10 0.40 16 10 C -0.11 -4.32 4.83 29.85 0.14 -4.18 16 11 C 0.52 20.01 7.85 87.66 0.69 20.70 16 12 O -0.59 -27.55 16.24 -3.03 -0.05 -27.60 16 13 N -0.62 -17.20 3.33 -811.81 -2.70 -19.90 16 14 C 0.09 1.70 6.48 86.73 0.56 2.26 16 15 C -0.10 -1.28 6.38 31.87 0.20 -1.08 16 16 C -0.08 -1.20 3.09 -9.32 -0.03 -1.23 16 17 H 0.08 1.29 6.78 -2.39 -0.02 1.27 16 18 C 0.07 0.86 4.45 86.30 0.38 1.24 16 19 N -0.54 -6.25 4.59 -895.19 -4.11 -10.36 16 20 C 0.02 0.19 5.60 86.31 0.48 0.67 16 21 C 0.06 0.63 7.01 72.01 0.50 1.14 16 22 O -0.41 -6.30 10.83 -148.98 -1.61 -7.91 16 23 C 0.06 0.74 7.01 72.01 0.50 1.25 16 24 C 0.02 0.19 5.47 86.31 0.47 0.66 16 25 C 0.11 2.34 6.38 86.85 0.55 2.90 16 26 H 0.27 15.74 8.31 -92.71 -0.77 14.97 16 27 H 0.01 0.48 7.16 -2.38 -0.02 0.47 16 28 H 0.01 0.39 7.53 -2.39 -0.02 0.38 16 29 H 0.10 3.62 8.14 -2.38 -0.02 3.60 16 30 H 0.10 3.62 8.14 -2.38 -0.02 3.61 16 31 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.09 0.97 7.93 -2.39 -0.02 0.95 16 34 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.04 0.50 7.99 -2.38 -0.02 0.48 16 36 H 0.09 0.91 7.72 -2.39 -0.02 0.89 16 37 H 0.04 0.41 8.14 -2.39 -0.02 0.39 16 38 H 0.10 0.73 8.02 -2.38 -0.02 0.71 16 39 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 40 H 0.11 0.80 8.14 -2.39 -0.02 0.78 16 41 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 42 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 43 H 0.09 1.04 6.75 -2.38 -0.02 1.03 16 44 H 0.03 0.48 8.13 -2.39 -0.02 0.46 16 45 H 0.06 1.49 8.04 -2.39 -0.02 1.47 16 46 H 0.07 1.49 8.04 -2.39 -0.02 1.47 16 Total: -1.00 -75.59 361.97 -0.13 -75.72 By element: Atomic # 1 Polarization: 3.63 SS G_CDS: 0.88 Total: 4.50 kcal Atomic # 6 Polarization: -9.97 SS G_CDS: 5.28 Total: -4.69 kcal Atomic # 7 Polarization: -82.77 SS G_CDS: -6.51 Total: -89.28 kcal Atomic # 8 Polarization: -33.85 SS G_CDS: -1.66 Total: -35.51 kcal Atomic # 14 Polarization: 47.38 SS G_CDS: 1.88 Total: 49.27 kcal Total: -75.59 -0.13 -75.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330883618.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.632 kcal (2) G-P(sol) polarization free energy of solvation -75.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds