Wall clock time and date at job start Tue Mar 31 2020 03:15:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42895 * 114.00204 * 2 1 4 4 C 1.53002 * 109.47065 * 179.97438 * 3 2 1 5 5 N 1.46506 * 109.46877 * 180.02562 * 4 3 2 6 6 C 1.34949 * 126.03292 * 124.99906 * 5 4 3 7 7 C 1.35318 * 107.74247 * 179.97438 * 6 5 4 8 8 C 1.50700 * 126.04120 * 180.02562 * 7 6 5 9 9 N 1.46498 * 109.47303 * 269.99980 * 8 7 6 10 10 C 1.34777 * 120.00096 * 179.97438 * 9 8 7 11 11 O 1.21579 * 119.99825 * 0.02562 * 10 9 8 12 12 N 1.34776 * 119.99805 * 179.97438 * 10 9 8 13 13 C 1.46504 * 119.99869 * 179.97438 * 12 10 9 14 14 C 1.53001 * 109.47130 * 180.02562 * 13 12 10 15 15 C 1.50700 * 109.46852 * 179.97438 * 14 13 12 16 16 H 1.07996 * 120.00417 * 0.02562 * 15 14 13 17 17 C 1.37878 * 119.99519 * 180.02562 * 15 14 13 18 18 N 1.31511 * 119.99808 * 180.02562 * 17 15 14 19 19 Si 1.86801 * 120.00328 * 0.02562 * 17 15 14 20 20 H 1.48495 * 109.46902 * 90.00048 * 19 17 15 21 21 H 1.48502 * 109.47176 * 210.00199 * 19 17 15 22 22 H 1.48500 * 109.46821 * 330.00149 * 19 17 15 23 23 C 1.39875 * 107.92186 * 0.02562 * 7 6 5 24 24 N 1.30839 * 108.20184 * 359.97438 * 23 7 6 25 25 H 1.09001 * 109.47174 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47069 * 300.00287 * 1 2 3 27 27 H 1.09005 * 109.47097 * 60.00159 * 1 2 3 28 28 H 1.09001 * 109.47410 * 59.99905 * 3 2 1 29 29 H 1.08995 * 109.47234 * 299.99855 * 3 2 1 30 30 H 1.08998 * 109.47319 * 60.00169 * 4 3 2 31 31 H 1.09005 * 109.47113 * 299.99871 * 4 3 2 32 32 H 1.07997 * 126.13040 * 0.03555 * 6 5 4 33 33 H 1.09003 * 109.47079 * 30.00095 * 8 7 6 34 34 H 1.09002 * 109.47262 * 149.99741 * 8 7 6 35 35 H 0.96998 * 119.99899 * 0.02562 * 9 8 7 36 36 H 0.96998 * 120.00189 * 0.02562 * 12 10 9 37 37 H 1.09002 * 109.47331 * 300.00563 * 13 12 10 38 38 H 1.09000 * 109.46984 * 60.00447 * 13 12 10 39 39 H 1.08998 * 109.46943 * 300.00363 * 14 13 12 40 40 H 1.09000 * 109.46875 * 60.00315 * 14 13 12 41 41 H 0.96997 * 120.00362 * 179.97438 * 18 17 15 42 42 H 1.08003 * 125.89835 * 179.73925 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 7 4.1314 2.5229 0.0013 6 6 5.0257 2.9933 0.8957 7 6 5.3263 4.2660 0.5480 8 6 6.2850 5.1790 1.2680 9 7 5.5621 5.9354 2.2934 10 6 6.2208 6.8200 3.0681 11 8 7.4149 6.9904 2.9156 12 7 5.5556 7.5162 4.0111 13 6 6.2718 8.4773 4.8536 14 6 5.2920 9.1256 5.8338 15 6 6.0289 10.1137 6.7008 16 1 7.0897 10.2646 6.5659 17 6 5.3486 10.8252 7.6662 18 7 5.9914 11.6879 8.4225 19 14 3.5138 10.5637 7.9000 20 1 3.2905 9.4824 8.8930 21 1 2.8930 11.8209 8.3892 22 1 2.8994 10.1800 6.6037 23 6 4.5901 4.5845 -0.5979 24 7 3.8736 3.5402 -0.9266 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.6886 1.8464 0.8900 29 1 1.6887 1.8463 -0.8900 30 1 3.8575 0.6435 -0.8891 31 1 3.8567 0.6437 0.8909 32 1 5.4298 2.4509 1.7376 33 1 7.0680 4.5849 1.7392 34 1 6.7332 5.8706 0.5547 35 1 4.6095 5.7992 2.4153 36 1 4.6029 7.3805 4.1325 37 1 7.0537 7.9607 5.4102 38 1 6.7208 9.2470 4.2257 39 1 4.5099 9.6421 5.2774 40 1 4.8434 8.3557 6.4616 41 1 5.5129 12.1887 9.1015 42 1 4.6070 5.5304 -1.1189 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336986443.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:15:34 Heat of formation + Delta-G solvation = -0.449311 kcal Electronic energy + Delta-G solvation = -22387.156440 eV Core-core repulsion = 18790.391784 eV Total energy + Delta-G solvation = -3596.764656 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 296.164 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.67353 -39.49267 -38.53926 -35.49896 -34.67763 -33.86927 -32.74709 -31.03087 -30.19671 -29.47284 -27.02577 -25.75120 -24.32061 -23.83909 -21.19739 -20.81928 -20.58069 -20.57346 -18.20470 -17.56449 -16.90051 -16.83472 -16.41056 -15.93251 -15.70136 -15.34892 -15.06026 -14.50382 -14.34923 -14.06422 -13.86258 -13.80110 -13.64381 -13.22476 -12.98018 -12.57836 -12.53578 -12.30937 -12.10366 -11.91840 -11.44748 -11.18149 -10.94674 -10.35405 -10.32721 -10.23303 -9.95937 -9.85123 -9.78487 -9.30212 -8.98909 -8.88376 -8.60316 -8.31305 -6.08676 -4.08357 1.41994 1.89261 2.27820 3.20155 3.26482 3.29761 3.34119 3.35592 3.60059 4.03675 4.30962 4.39632 4.43115 4.53027 4.64567 4.70214 4.77455 4.78655 4.91890 5.02141 5.07462 5.11890 5.18843 5.24271 5.41526 5.70778 5.89375 6.13423 6.23191 6.29479 6.40986 6.55834 6.60578 6.65984 6.87748 7.11394 7.27911 7.28533 7.36875 7.70517 8.36832 8.49567 8.95744 8.99342 9.51570 11.04402 Molecular weight = 296.16amu Principal moments of inertia in cm(-1) A = 0.017485 B = 0.002309 C = 0.002089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1601.020191 B =12124.226354 C =13397.681457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.392 6.392 3 C 0.051 3.949 4 C 0.138 3.862 5 N -0.373 5.373 6 C 0.081 3.919 7 C -0.254 4.254 8 C 0.220 3.780 9 N -0.750 5.750 10 C 0.698 3.302 11 O -0.596 6.596 12 N -0.744 5.744 13 C 0.148 3.852 14 C -0.022 4.022 15 C -0.521 4.521 16 H 0.076 0.924 17 C 0.068 3.932 18 N -0.899 5.899 19 Si 0.883 3.117 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.266 1.266 23 C 0.069 3.931 24 N -0.298 5.298 25 H 0.090 0.910 26 H 0.044 0.956 27 H 0.044 0.956 28 H 0.056 0.944 29 H 0.066 0.934 30 H 0.095 0.905 31 H 0.106 0.894 32 H 0.178 0.822 33 H 0.069 0.931 34 H 0.072 0.928 35 H 0.393 0.607 36 H 0.391 0.609 37 H 0.060 0.940 38 H 0.060 0.940 39 H 0.021 0.979 40 H 0.017 0.983 41 H 0.264 0.736 42 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.406 -24.142 -18.790 32.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.310 6.310 3 C -0.027 4.027 4 C 0.016 3.984 5 N -0.156 5.156 6 C -0.066 4.066 7 C -0.266 4.266 8 C 0.095 3.905 9 N -0.407 5.407 10 C 0.398 3.602 11 O -0.475 6.475 12 N -0.397 5.397 13 C 0.026 3.974 14 C -0.060 4.060 15 C -0.559 4.559 16 H 0.094 0.906 17 C -0.134 4.134 18 N -0.537 5.537 19 Si 0.710 3.290 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.191 1.191 23 C -0.118 4.118 24 N -0.118 5.118 25 H 0.109 0.891 26 H 0.063 0.937 27 H 0.063 0.937 28 H 0.074 0.926 29 H 0.084 0.916 30 H 0.113 0.887 31 H 0.124 0.876 32 H 0.195 0.805 33 H 0.087 0.913 34 H 0.091 0.909 35 H 0.226 0.774 36 H 0.223 0.777 37 H 0.078 0.922 38 H 0.078 0.922 39 H 0.039 0.961 40 H 0.035 0.965 41 H 0.074 0.926 42 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -10.098 -24.645 -19.598 33.067 hybrid contribution -1.549 0.377 0.982 1.872 sum -11.646 -24.268 -18.616 32.728 Atomic orbital electron populations 1.22791 0.79846 1.03173 1.00453 1.87774 1.20668 1.26931 1.95615 1.22659 0.92610 0.85352 1.02051 1.21393 0.92587 0.79027 1.05343 1.48438 1.33887 1.11838 1.21453 1.22495 0.93362 0.95440 0.95286 1.20153 1.08874 0.95761 1.01802 1.19183 0.91137 0.91659 0.88525 1.45297 1.11988 1.44624 1.38829 1.16050 0.85374 0.79202 0.79558 1.90903 1.13378 1.70292 1.72895 1.45527 1.12075 1.44472 1.37656 1.21360 0.95280 0.89467 0.91337 1.19797 0.95603 0.96128 0.94438 1.20930 0.97271 1.21179 1.16566 0.90566 1.25006 0.98311 0.94695 0.95357 1.69902 1.36342 1.25809 1.21668 0.86744 0.85851 0.77670 0.78744 1.20294 1.21328 1.19105 1.23928 0.94193 0.97862 0.95833 1.77395 1.24170 0.96697 1.13528 0.89117 0.93718 0.93690 0.92596 0.91579 0.88716 0.87578 0.80493 0.91270 0.90926 0.77402 0.77669 0.92206 0.92150 0.96055 0.96525 0.92593 0.79674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 11.01 101.05 1.11 1.27 16 2 O -0.39 -2.78 10.70 -35.23 -0.38 -3.15 16 3 C 0.05 0.33 6.12 37.16 0.23 0.56 16 4 C 0.14 0.80 6.88 -4.04 -0.03 0.77 16 5 N -0.37 -2.98 3.68 -61.36 -0.23 -3.21 16 6 C 0.08 0.61 11.36 -17.22 -0.20 0.41 16 7 C -0.25 -2.21 5.47 -105.05 -0.57 -2.78 16 8 C 0.22 2.30 6.15 -5.19 -0.03 2.27 16 9 N -0.75 -8.93 5.55 -66.42 -0.37 -9.30 16 10 C 0.70 11.70 8.57 -86.92 -0.74 10.95 16 11 O -0.60 -12.53 16.34 5.30 0.09 -12.44 16 12 N -0.74 -12.45 5.56 -65.22 -0.36 -12.82 16 13 C 0.15 3.08 5.61 -4.04 -0.02 3.06 16 14 C -0.02 -0.50 4.16 -27.88 -0.12 -0.62 16 15 C -0.52 -14.67 9.66 -34.44 -0.33 -15.00 16 16 H 0.08 2.33 7.99 -52.49 -0.42 1.91 16 17 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 18 N -0.90 -27.43 13.96 55.43 0.77 -26.66 16 19 Si 0.88 21.10 27.47 -169.99 -4.67 16.43 16 20 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 21 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 22 H -0.27 -6.01 6.54 56.52 0.37 -5.64 16 23 C 0.07 0.62 11.96 -17.36 -0.21 0.41 16 24 N -0.30 -2.94 12.42 30.63 0.38 -2.56 16 25 H 0.09 0.31 8.14 -51.93 -0.42 -0.12 16 26 H 0.04 0.19 8.14 -51.93 -0.42 -0.24 16 27 H 0.04 0.19 8.14 -51.93 -0.42 -0.23 16 28 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 29 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.11 0.41 8.07 -51.93 -0.42 -0.01 16 32 H 0.18 0.86 8.06 -52.49 -0.42 0.44 16 33 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.39 3.80 8.48 -40.82 -0.35 3.45 16 36 H 0.39 5.42 8.49 -40.82 -0.35 5.08 16 37 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 38 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 39 H 0.02 0.48 7.20 -51.93 -0.37 0.11 16 40 H 0.02 0.37 7.57 -51.93 -0.39 -0.02 16 41 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 42 H 0.19 1.30 8.06 -52.48 -0.42 0.87 16 LS Contribution 362.49 15.07 5.46 5.46 Total: -1.00 -35.40 362.49 -6.85 -42.25 By element: Atomic # 1 Polarization: 9.38 SS G_CDS: -6.54 Total: 2.84 kcal Atomic # 6 Polarization: 4.18 SS G_CDS: -1.01 Total: 3.17 kcal Atomic # 7 Polarization: -54.74 SS G_CDS: 0.20 Total: -54.55 kcal Atomic # 8 Polarization: -15.30 SS G_CDS: -0.29 Total: -15.60 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -4.67 Total: 16.43 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -35.40 -6.85 -42.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336986443.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.801 kcal (2) G-P(sol) polarization free energy of solvation -35.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds