Wall clock time and date at job start Tue Mar 31 2020 03:15:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42895 * 114.00204 * 2 1 4 4 C 1.53002 * 109.47065 * 179.97438 * 3 2 1 5 5 N 1.46506 * 109.46877 * 180.02562 * 4 3 2 6 6 C 1.34949 * 126.03292 * 124.99906 * 5 4 3 7 7 C 1.35318 * 107.74247 * 179.97438 * 6 5 4 8 8 C 1.50700 * 126.04120 * 180.02562 * 7 6 5 9 9 N 1.46498 * 109.47303 * 269.99980 * 8 7 6 10 10 C 1.34777 * 120.00096 * 179.97438 * 9 8 7 11 11 O 1.21579 * 119.99825 * 0.02562 * 10 9 8 12 12 N 1.34776 * 119.99805 * 179.97438 * 10 9 8 13 13 C 1.46504 * 119.99869 * 179.97438 * 12 10 9 14 14 C 1.53001 * 109.47130 * 180.02562 * 13 12 10 15 15 C 1.50700 * 109.46852 * 179.97438 * 14 13 12 16 16 H 1.07996 * 120.00417 * 0.02562 * 15 14 13 17 17 C 1.37878 * 119.99519 * 180.02562 * 15 14 13 18 18 N 1.31511 * 119.99808 * 180.02562 * 17 15 14 19 19 Si 1.86801 * 120.00328 * 0.02562 * 17 15 14 20 20 H 1.48495 * 109.46902 * 90.00048 * 19 17 15 21 21 H 1.48502 * 109.47176 * 210.00199 * 19 17 15 22 22 H 1.48500 * 109.46821 * 330.00149 * 19 17 15 23 23 C 1.39875 * 107.92186 * 0.02562 * 7 6 5 24 24 N 1.30839 * 108.20184 * 359.97438 * 23 7 6 25 25 H 1.09001 * 109.47174 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47069 * 300.00287 * 1 2 3 27 27 H 1.09005 * 109.47097 * 60.00159 * 1 2 3 28 28 H 1.09001 * 109.47410 * 59.99905 * 3 2 1 29 29 H 1.08995 * 109.47234 * 299.99855 * 3 2 1 30 30 H 1.08998 * 109.47319 * 60.00169 * 4 3 2 31 31 H 1.09005 * 109.47113 * 299.99871 * 4 3 2 32 32 H 1.07997 * 126.13040 * 0.03555 * 6 5 4 33 33 H 1.09003 * 109.47079 * 30.00095 * 8 7 6 34 34 H 1.09002 * 109.47262 * 149.99741 * 8 7 6 35 35 H 0.96998 * 119.99899 * 0.02562 * 9 8 7 36 36 H 0.96998 * 120.00189 * 0.02562 * 12 10 9 37 37 H 1.09002 * 109.47331 * 300.00563 * 13 12 10 38 38 H 1.09000 * 109.46984 * 60.00447 * 13 12 10 39 39 H 1.08998 * 109.46943 * 300.00363 * 14 13 12 40 40 H 1.09000 * 109.46875 * 60.00315 * 14 13 12 41 41 H 0.96997 * 120.00362 * 179.97438 * 18 17 15 42 42 H 1.08003 * 125.89835 * 179.73925 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 7 4.1314 2.5229 0.0013 6 6 5.0257 2.9933 0.8957 7 6 5.3263 4.2660 0.5480 8 6 6.2850 5.1790 1.2680 9 7 5.5621 5.9354 2.2934 10 6 6.2208 6.8200 3.0681 11 8 7.4149 6.9904 2.9156 12 7 5.5556 7.5162 4.0111 13 6 6.2718 8.4773 4.8536 14 6 5.2920 9.1256 5.8338 15 6 6.0289 10.1137 6.7008 16 1 7.0897 10.2646 6.5659 17 6 5.3486 10.8252 7.6662 18 7 5.9914 11.6879 8.4225 19 14 3.5138 10.5637 7.9000 20 1 3.2905 9.4824 8.8930 21 1 2.8930 11.8209 8.3892 22 1 2.8994 10.1800 6.6037 23 6 4.5901 4.5845 -0.5979 24 7 3.8736 3.5402 -0.9266 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.6886 1.8464 0.8900 29 1 1.6887 1.8463 -0.8900 30 1 3.8575 0.6435 -0.8891 31 1 3.8567 0.6437 0.8909 32 1 5.4298 2.4509 1.7376 33 1 7.0680 4.5849 1.7392 34 1 6.7332 5.8706 0.5547 35 1 4.6095 5.7992 2.4153 36 1 4.6029 7.3805 4.1325 37 1 7.0537 7.9607 5.4102 38 1 6.7208 9.2470 4.2257 39 1 4.5099 9.6421 5.2774 40 1 4.8434 8.3557 6.4616 41 1 5.5129 12.1887 9.1015 42 1 4.6070 5.5304 -1.1189 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336986443.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:15:33 Heat of formation + Delta-G solvation = -28.188753 kcal Electronic energy + Delta-G solvation = -22388.359312 eV Core-core repulsion = 18790.391784 eV Total energy + Delta-G solvation = -3597.967528 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 296.164 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.30476 -40.82264 -39.01013 -36.82447 -35.94867 -34.78464 -34.54841 -32.26604 -31.28326 -30.35409 -27.61503 -26.90176 -25.68021 -24.41848 -22.62679 -21.91498 -21.77280 -21.29185 -19.43225 -18.86444 -18.20500 -17.41376 -17.18105 -16.72565 -16.66278 -16.40057 -16.24352 -15.64485 -15.37820 -15.25470 -15.20605 -14.92503 -14.56541 -14.37513 -14.16392 -13.72048 -13.30993 -13.26016 -12.98458 -12.90438 -12.59547 -12.34238 -12.13326 -12.12302 -11.73928 -11.61141 -11.50426 -11.27173 -10.79226 -10.76326 -10.47132 -10.27448 -9.63786 -9.56083 -8.27372 -6.34290 0.81771 1.36429 1.40679 1.43606 1.50560 1.54884 2.16332 2.25866 2.39074 2.76511 3.07578 3.52726 3.56947 3.86235 3.89973 3.98321 4.20392 4.22317 4.39689 4.40427 4.44293 4.49419 4.51133 4.55123 4.64107 4.80473 4.81244 4.81363 4.88882 5.16234 5.21362 5.45869 5.49665 5.57164 5.61480 5.71761 5.93678 6.05709 6.13025 6.26706 6.65654 6.73249 7.22727 7.30047 7.69264 8.89393 Molecular weight = 296.16amu Principal moments of inertia in cm(-1) A = 0.017485 B = 0.002309 C = 0.002089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1601.020191 B =12124.226354 C =13397.681457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.406 6.406 3 C 0.057 3.943 4 C 0.135 3.865 5 N -0.373 5.373 6 C 0.093 3.907 7 C -0.264 4.264 8 C 0.225 3.775 9 N -0.727 5.727 10 C 0.697 3.303 11 O -0.642 6.642 12 N -0.734 5.734 13 C 0.164 3.836 14 C -0.012 4.012 15 C -0.538 4.538 16 H 0.029 0.971 17 C 0.002 3.998 18 N -0.951 5.951 19 Si 0.960 3.040 20 H -0.265 1.265 21 H -0.288 1.288 22 H -0.237 1.237 23 C 0.065 3.935 24 N -0.327 5.327 25 H 0.104 0.896 26 H 0.049 0.951 27 H 0.047 0.953 28 H 0.055 0.945 29 H 0.053 0.947 30 H 0.097 0.903 31 H 0.131 0.869 32 H 0.207 0.793 33 H 0.067 0.933 34 H 0.064 0.936 35 H 0.408 0.592 36 H 0.409 0.591 37 H 0.041 0.959 38 H 0.040 0.960 39 H 0.036 0.964 40 H 0.036 0.964 41 H 0.267 0.733 42 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.061 -26.302 -19.271 35.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.325 6.325 3 C -0.021 4.021 4 C 0.015 3.985 5 N -0.155 5.155 6 C -0.054 4.054 7 C -0.276 4.276 8 C 0.100 3.900 9 N -0.384 5.384 10 C 0.397 3.603 11 O -0.524 6.524 12 N -0.389 5.389 13 C 0.040 3.960 14 C -0.049 4.049 15 C -0.576 4.576 16 H 0.047 0.953 17 C -0.195 4.195 18 N -0.591 5.591 19 Si 0.783 3.217 20 H -0.190 1.190 21 H -0.214 1.214 22 H -0.160 1.160 23 C -0.122 4.122 24 N -0.148 5.148 25 H 0.122 0.878 26 H 0.068 0.932 27 H 0.066 0.934 28 H 0.073 0.927 29 H 0.071 0.929 30 H 0.115 0.885 31 H 0.149 0.851 32 H 0.223 0.777 33 H 0.086 0.914 34 H 0.082 0.918 35 H 0.244 0.756 36 H 0.245 0.755 37 H 0.059 0.941 38 H 0.058 0.942 39 H 0.054 0.946 40 H 0.054 0.946 41 H 0.076 0.924 42 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -12.812 -26.862 -20.130 35.930 hybrid contribution -0.646 0.998 1.086 1.611 sum -13.458 -25.864 -19.043 34.824 Atomic orbital electron populations 1.22959 0.78814 1.04246 1.00860 1.87749 1.21898 1.27170 1.95660 1.22567 0.93079 0.85105 1.01349 1.21581 0.92085 0.78185 1.06691 1.48599 1.33769 1.12127 1.21024 1.22923 0.92187 0.95031 0.95291 1.19937 1.09443 0.96149 1.02105 1.19154 0.91434 0.91514 0.87872 1.45150 1.12617 1.42916 1.37672 1.16180 0.84827 0.79585 0.79714 1.90880 1.15622 1.71763 1.74150 1.45133 1.12761 1.43770 1.37243 1.20856 0.94659 0.89525 0.90986 1.19643 0.95603 0.95428 0.94273 1.21266 0.95812 1.22697 1.17841 0.95273 1.26096 1.04557 0.94081 0.94748 1.70077 1.38972 1.27308 1.22740 0.85518 0.78238 0.77816 0.80154 1.18993 1.21384 1.15989 1.24185 0.93825 0.98223 0.95920 1.77373 1.25161 0.97461 1.14767 0.87797 0.93194 0.93413 0.92665 0.92897 0.88522 0.85118 0.77667 0.91436 0.91788 0.75623 0.75526 0.94051 0.94153 0.94559 0.94620 0.92385 0.78598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.01 113.37 1.25 1.47 16 2 O -0.41 -5.13 10.70 -148.98 -1.59 -6.72 16 3 C 0.06 0.65 6.12 71.98 0.44 1.09 16 4 C 0.14 1.27 6.88 86.38 0.59 1.86 16 5 N -0.37 -5.12 3.68 -348.04 -1.28 -6.40 16 6 C 0.09 1.13 11.36 83.54 0.95 2.07 16 7 C -0.26 -4.03 5.47 -20.14 -0.11 -4.14 16 8 C 0.22 4.33 6.15 85.63 0.53 4.85 16 9 N -0.73 -15.72 5.55 -482.30 -2.68 -18.40 16 10 C 0.70 22.44 8.57 179.05 1.53 23.97 16 11 O -0.64 -26.97 16.34 -3.96 -0.06 -27.04 16 12 N -0.73 -23.22 5.56 -478.53 -2.66 -25.88 16 13 C 0.16 6.80 5.61 86.38 0.48 7.28 16 14 C -0.01 -0.52 4.16 29.85 0.12 -0.39 16 15 C -0.54 -30.80 9.66 25.60 0.25 -30.56 16 16 H 0.03 1.87 7.99 -2.91 -0.02 1.85 16 17 C 0.00 0.12 5.47 84.66 0.46 0.58 16 18 N -0.95 -59.43 13.96 21.45 0.30 -59.13 16 19 Si 0.96 42.27 27.47 68.60 1.88 44.16 16 20 H -0.26 -11.12 7.11 99.48 0.71 -10.42 16 21 H -0.29 -12.63 7.11 99.48 0.71 -11.93 16 22 H -0.24 -9.24 6.54 99.48 0.65 -8.59 16 23 C 0.07 1.06 11.96 85.24 1.02 2.08 16 24 N -0.33 -5.99 12.42 -57.02 -0.71 -6.69 16 25 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 26 H 0.05 0.34 8.14 -2.39 -0.02 0.32 16 27 H 0.05 0.35 8.14 -2.38 -0.02 0.33 16 28 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 29 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.13 0.58 8.07 -2.38 -0.02 0.56 16 32 H 0.21 1.18 8.06 -2.91 -0.02 1.16 16 33 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.41 6.61 8.48 -92.71 -0.79 5.82 16 36 H 0.41 9.98 8.49 -92.71 -0.79 9.20 16 37 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 38 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 39 H 0.04 1.52 7.20 -2.39 -0.02 1.50 16 40 H 0.04 1.47 7.57 -2.39 -0.02 1.45 16 41 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 42 H 0.20 2.50 8.06 -2.91 -0.02 2.48 16 Total: -1.00 -78.57 362.49 0.12 -78.45 By element: Atomic # 1 Polarization: 18.08 SS G_CDS: -0.60 Total: 17.48 kcal Atomic # 6 Polarization: 2.66 SS G_CDS: 7.52 Total: 10.18 kcal Atomic # 7 Polarization: -109.48 SS G_CDS: -7.03 Total: -116.51 kcal Atomic # 8 Polarization: -32.10 SS G_CDS: -1.66 Total: -33.76 kcal Atomic # 14 Polarization: 42.27 SS G_CDS: 1.88 Total: 44.16 kcal Total: -78.57 0.12 -78.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336986443.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.258 kcal (2) G-P(sol) polarization free energy of solvation -78.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds