Wall clock time and date at job start Tue Mar 31 2020 03:25:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86795 * 120.00185 * 2 1 4 4 H 1.48497 * 109.47137 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47219 * 300.00054 * 3 2 1 6 6 H 1.48505 * 109.47083 * 60.00145 * 3 2 1 7 7 C 1.38811 * 119.99467 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99818 * 197.58451 * 7 2 1 9 9 N 1.36934 * 120.00739 * 17.58757 * 7 2 1 10 10 C 1.46959 * 120.59562 * 208.16434 * 9 7 2 11 11 C 1.53371 * 108.63491 * 235.19927 * 10 9 7 12 12 N 1.46967 * 108.63643 * 310.57577 * 11 10 9 13 13 C 1.34771 * 120.59971 * 235.20340 * 12 11 10 14 14 O 1.21284 * 119.99732 * 359.97438 * 13 12 11 15 15 C 1.50699 * 120.00324 * 179.97438 * 13 12 11 16 16 C 1.53004 * 109.47074 * 180.02562 * 15 13 12 17 17 H 1.09004 * 109.47079 * 55.00063 * 16 15 13 18 18 C 1.53006 * 109.46889 * 294.99905 * 16 15 13 19 19 C 1.53004 * 109.46889 * 180.02562 * 18 16 15 20 20 C 1.52998 * 109.47052 * 60.00010 * 19 18 16 21 21 C 1.53006 * 109.47265 * 299.99760 * 20 19 18 22 22 C 1.52998 * 109.47052 * 174.99915 * 16 15 13 23 23 H 1.09004 * 109.47058 * 60.00134 * 22 16 15 24 24 O 1.42899 * 109.47242 * 299.99726 * 22 16 15 25 25 C 1.46969 * 118.80830 * 55.47609 * 12 11 10 26 26 C 1.46966 * 120.58987 * 28.13621 * 9 7 2 27 27 H 0.97000 * 119.99872 * 0.02562 * 1 2 3 28 28 H 1.09005 * 109.60901 * 115.45714 * 10 9 7 29 29 H 1.08997 * 109.61353 * 354.94634 * 10 9 7 30 30 H 1.09001 * 109.61557 * 190.83457 * 11 10 9 31 31 H 1.08997 * 109.60829 * 70.31675 * 11 10 9 32 32 H 1.08997 * 109.47385 * 60.00057 * 15 13 12 33 33 H 1.08997 * 109.47337 * 299.99586 * 15 13 12 34 34 H 1.08999 * 109.47022 * 60.00199 * 18 16 15 35 35 H 1.08994 * 109.46890 * 300.00246 * 18 16 15 36 36 H 1.08994 * 109.47083 * 300.00081 * 19 18 16 37 37 H 1.08993 * 109.46885 * 179.97438 * 19 18 16 38 38 H 1.09003 * 109.47064 * 179.97438 * 20 19 18 39 39 H 1.09004 * 109.47020 * 59.99580 * 20 19 18 40 40 H 1.08999 * 109.47022 * 179.97438 * 21 20 19 41 41 H 1.08994 * 109.47324 * 300.00206 * 21 20 19 42 42 H 0.96694 * 113.99908 * 179.97438 * 24 22 16 43 43 H 1.08995 * 109.61302 * 64.26870 * 25 12 11 44 44 H 1.09006 * 109.61098 * 184.78017 * 25 12 11 45 45 H 1.09003 * 109.61130 * 244.54185 * 26 9 7 46 46 H 1.08996 * 109.61379 * 5.05437 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3964 1.2126 7 6 2.0101 -1.2022 -0.0005 8 1 3.0523 -1.2242 0.2820 9 7 1.3735 -2.3602 -0.3594 10 6 1.8127 -3.6539 0.1820 11 6 2.1164 -4.5974 -0.9884 12 7 0.9812 -4.5687 -1.9214 13 6 0.3545 -5.7084 -2.2746 14 8 0.7265 -6.7703 -1.8220 15 6 -0.8085 -5.6633 -3.2319 16 6 -1.3342 -7.0815 -3.4628 17 1 -1.5780 -7.5392 -2.5040 18 6 -0.2617 -7.9145 -4.1677 19 6 -0.7877 -9.3325 -4.3992 20 6 -2.0435 -9.2746 -5.2712 21 6 -3.1160 -8.4416 -4.5663 22 6 -2.5903 -7.0241 -4.3346 23 1 -2.3465 -6.5664 -5.2934 24 8 -3.5919 -6.2461 -3.6762 25 6 0.5455 -3.2755 -2.4672 26 6 0.2383 -2.3315 -1.2923 27 1 -0.4850 0.8401 -0.0004 28 1 1.0217 -4.0797 0.7994 29 1 2.7122 -3.5133 0.7814 30 1 2.2566 -5.6115 -0.6141 31 1 3.0194 -4.2657 -1.5008 32 1 -0.4818 -5.2376 -4.1807 33 1 -1.6021 -5.0462 -2.8108 34 1 0.6331 -7.9554 -3.5466 35 1 -0.0180 -7.4568 -5.1264 36 1 -1.0318 -9.7905 -3.4407 37 1 -0.0239 -9.9258 -4.9017 38 1 -2.4180 -10.2849 -5.4365 39 1 -1.7995 -8.8166 -6.2298 40 1 -4.0105 -8.4000 -5.1878 41 1 -3.3601 -8.8995 -3.6078 42 1 -4.4177 -6.1666 -4.1729 43 1 1.3393 -2.8519 -3.0824 44 1 -0.3519 -3.4163 -3.0696 45 1 -0.6648 -2.6631 -0.7800 46 1 0.0980 -1.3175 -1.6667 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343507002.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:25:02 Heat of formation + Delta-G solvation = -100.118277 kcal Electronic energy + Delta-G solvation = -25199.361799 eV Core-core repulsion = 21701.815516 eV Total energy + Delta-G solvation = -3497.546283 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.34963 -39.84638 -38.36386 -36.41136 -35.58063 -33.89227 -33.03743 -31.80620 -30.57032 -29.07597 -27.64691 -25.38880 -24.45915 -23.57252 -22.76492 -21.74681 -20.79268 -20.00317 -18.70571 -18.13827 -17.73766 -17.00524 -16.70434 -16.48727 -16.04931 -15.47891 -15.44476 -15.29371 -15.15430 -14.95422 -14.77039 -14.23231 -14.06893 -13.91637 -13.50060 -13.40813 -13.22490 -12.93750 -12.70606 -12.52748 -12.49141 -12.26338 -12.19751 -12.02712 -11.95705 -11.84544 -11.66109 -11.56675 -11.34199 -11.16501 -10.70514 -10.61558 -10.46831 -9.78774 -8.66773 -7.89228 -5.37788 1.47778 1.50399 1.60850 1.67182 2.08827 2.51323 3.25114 3.31857 3.55513 3.58858 3.65968 3.92405 4.07180 4.19381 4.22774 4.23739 4.31682 4.37606 4.39925 4.46792 4.48525 4.56164 4.60437 4.63115 4.71452 4.75181 4.79882 4.84953 4.99946 5.06369 5.08732 5.21517 5.21668 5.26765 5.27165 5.32297 5.47374 5.53546 5.56480 5.61023 5.67232 6.34650 6.53328 6.99456 7.09795 7.22523 7.77262 8.31403 9.16085 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.029196 B = 0.003428 C = 0.003187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.810201 B = 8165.533546 C = 8782.740078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.046 4.046 3 Si 0.970 3.030 4 H -0.267 1.267 5 H -0.286 1.286 6 H -0.295 1.295 7 C -0.266 4.266 8 H 0.069 0.931 9 N -0.609 5.609 10 C 0.132 3.868 11 C 0.106 3.894 12 N -0.605 5.605 13 C 0.507 3.493 14 O -0.581 6.581 15 C -0.126 4.126 16 C -0.059 4.059 17 H 0.050 0.950 18 C -0.115 4.115 19 C -0.119 4.119 20 C -0.113 4.113 21 C -0.146 4.146 22 C 0.112 3.888 23 H 0.073 0.927 24 O -0.586 6.586 25 C 0.096 3.904 26 C 0.163 3.837 27 H 0.252 0.748 28 H 0.005 0.995 29 H 0.072 0.928 30 H 0.085 0.915 31 H 0.070 0.930 32 H 0.112 0.888 33 H 0.095 0.905 34 H 0.060 0.940 35 H 0.072 0.928 36 H 0.048 0.952 37 H 0.071 0.929 38 H 0.075 0.925 39 H 0.075 0.925 40 H 0.086 0.914 41 H 0.054 0.946 42 H 0.393 0.607 43 H 0.072 0.928 44 H 0.105 0.895 45 H -0.004 1.004 46 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.050 -14.817 -14.651 21.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.242 4.242 3 Si 0.798 3.202 4 H -0.192 1.192 5 H -0.212 1.212 6 H -0.222 1.222 7 C -0.396 4.396 8 H 0.087 0.913 9 N -0.333 5.333 10 C 0.005 3.995 11 C -0.018 4.018 12 N -0.337 5.337 13 C 0.298 3.702 14 O -0.463 6.463 15 C -0.165 4.165 16 C -0.078 4.078 17 H 0.069 0.931 18 C -0.152 4.152 19 C -0.157 4.157 20 C -0.150 4.150 21 C -0.184 4.184 22 C 0.053 3.947 23 H 0.091 0.909 24 O -0.394 6.394 25 C -0.028 4.028 26 C 0.037 3.963 27 H 0.061 0.939 28 H 0.023 0.977 29 H 0.091 0.909 30 H 0.103 0.897 31 H 0.089 0.911 32 H 0.130 0.870 33 H 0.114 0.886 34 H 0.079 0.921 35 H 0.091 0.909 36 H 0.067 0.933 37 H 0.090 0.910 38 H 0.093 0.907 39 H 0.094 0.906 40 H 0.104 0.896 41 H 0.073 0.927 42 H 0.243 0.757 43 H 0.090 0.910 44 H 0.123 0.877 45 H 0.014 0.986 46 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -4.474 -15.174 -13.947 21.090 hybrid contribution -0.167 1.081 0.379 1.158 sum -4.641 -14.093 -13.568 20.106 Atomic orbital electron populations 1.70180 1.06681 1.26065 1.54926 1.25816 0.96038 1.01536 1.00829 0.85170 0.78566 0.79600 0.76823 1.19177 1.21210 1.22214 1.19554 0.93134 0.85733 1.41181 0.91334 1.44279 1.36832 1.02080 1.50081 1.21357 0.97865 0.86358 0.93878 1.21973 0.88471 1.00206 0.91195 1.48190 1.32913 1.07338 1.45300 1.21261 0.84177 0.82661 0.82108 1.90580 1.67881 1.30220 1.57609 1.21691 0.95320 1.00055 0.99433 1.20840 0.94399 0.93594 0.98988 0.93101 1.21631 0.97771 0.95612 1.00189 1.21536 0.98148 0.96118 0.99866 1.21490 0.94291 1.00505 0.98726 1.22216 0.99500 0.95470 1.01233 1.21818 0.87264 0.90960 0.94640 0.90921 1.86529 1.27952 1.73947 1.50999 1.22546 1.00793 0.82714 0.96706 1.21095 0.87895 0.98449 0.88894 0.93860 0.97735 0.90947 0.89718 0.91134 0.86972 0.88626 0.92145 0.90938 0.93316 0.91004 0.90677 0.90605 0.89577 0.92707 0.75669 0.91009 0.87742 0.98596 0.90596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.79 11.20 21.65 0.24 -53.55 16 2 C -0.05 -2.53 4.90 84.86 0.42 -2.11 16 3 Si 0.97 43.66 29.59 68.60 2.03 45.69 16 4 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 5 H -0.29 -12.65 7.11 99.48 0.71 -11.94 16 6 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 7 C -0.27 -14.37 9.57 84.03 0.80 -13.57 16 8 H 0.07 3.61 7.89 -2.91 -0.02 3.59 16 9 N -0.61 -30.53 2.97 -697.36 -2.07 -32.60 16 10 C 0.13 5.73 6.67 86.42 0.58 6.31 16 11 C 0.11 3.96 6.59 86.41 0.57 4.53 16 12 N -0.61 -21.97 2.94 -817.14 -2.40 -24.37 16 13 C 0.51 17.56 7.41 87.66 0.65 18.21 16 14 O -0.58 -22.95 13.37 -3.04 -0.04 -22.99 16 15 C -0.13 -3.36 3.44 29.85 0.10 -3.26 16 16 C -0.06 -1.45 1.58 -10.79 -0.02 -1.47 16 17 H 0.05 1.57 7.96 -2.39 -0.02 1.55 16 18 C -0.11 -2.57 4.95 30.60 0.15 -2.42 16 19 C -0.12 -2.18 5.92 30.59 0.18 -2.00 16 20 C -0.11 -1.53 5.92 30.60 0.18 -1.35 16 21 C -0.15 -2.18 5.54 30.58 0.17 -2.01 16 22 C 0.11 2.04 2.90 30.58 0.09 2.12 16 23 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 24 O -0.59 -11.79 12.56 -148.98 -1.87 -13.66 16 25 C 0.10 3.41 6.53 86.56 0.57 3.98 16 26 C 0.16 7.63 5.53 86.56 0.48 8.10 16 27 H 0.25 14.01 8.31 -92.71 -0.77 13.24 16 28 H 0.00 0.22 8.14 -2.38 -0.02 0.20 16 29 H 0.07 2.98 7.93 -2.39 -0.02 2.96 16 30 H 0.08 3.11 6.99 -2.39 -0.02 3.10 16 31 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 32 H 0.11 2.42 7.90 -2.39 -0.02 2.40 16 33 H 0.10 2.73 7.12 -2.39 -0.02 2.72 16 34 H 0.06 1.74 5.95 -2.39 -0.01 1.72 16 35 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 36 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 39 H 0.08 0.86 8.14 -2.38 -0.02 0.84 16 40 H 0.09 0.89 8.14 -2.39 -0.02 0.88 16 41 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 42 H 0.39 4.21 9.08 -74.06 -0.67 3.53 16 43 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 44 H 0.10 3.03 5.91 -2.38 -0.01 3.01 16 45 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 46 H 0.08 3.91 5.99 -2.39 -0.01 3.90 16 Total: -1.00 -68.26 350.16 1.10 -67.17 By element: Atomic # 1 Polarization: 18.96 SS G_CDS: 0.29 Total: 19.25 kcal Atomic # 6 Polarization: 10.14 SS G_CDS: 4.92 Total: 15.06 kcal Atomic # 7 Polarization: -106.30 SS G_CDS: -4.23 Total: -110.53 kcal Atomic # 8 Polarization: -34.74 SS G_CDS: -1.91 Total: -36.65 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.69 kcal Total: -68.26 1.10 -67.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343507002.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.950 kcal (2) G-P(sol) polarization free energy of solvation -68.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds