Wall clock time and date at job start Tue Mar 31 2020 03:21:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36939 * 119.99734 * 2 1 4 4 H 1.08004 * 119.99805 * 143.76634 * 3 2 1 5 5 C 1.38802 * 120.00181 * 323.76563 * 3 2 1 6 6 N 1.31625 * 120.00125 * 346.00627 * 5 3 2 7 7 Si 1.86804 * 120.00017 * 166.01407 * 5 3 2 8 8 H 1.48490 * 109.47145 * 64.45857 * 7 5 3 9 9 H 1.48508 * 109.47016 * 184.45984 * 7 5 3 10 10 H 1.48496 * 109.46911 * 304.45673 * 7 5 3 11 11 C 1.46499 * 119.99974 * 180.02562 * 2 1 3 12 12 C 1.53003 * 109.47180 * 275.28320 * 11 2 1 13 13 H 1.09004 * 110.41682 * 66.70942 * 12 11 2 14 14 C 1.54897 * 110.37515 * 189.02197 * 12 11 2 15 15 C 1.55145 * 101.65422 * 155.89835 * 14 12 11 16 16 H 1.08998 * 110.70088 * 82.73326 * 15 14 12 17 17 F 1.39901 * 110.85477 * 205.89093 * 15 14 12 18 18 C 1.54313 * 103.02007 * 324.34909 * 15 14 12 19 19 N 1.47442 * 107.23352 * 22.28038 * 18 15 14 20 20 C 1.46906 * 111.00087 * 123.25842 * 19 18 15 21 21 C 1.50697 * 109.46799 * 77.47670 * 20 19 18 22 22 C 1.35315 * 126.12201 * 93.70397 * 21 20 19 23 23 C 1.39877 * 107.91515 * 179.97438 * 22 21 20 24 24 N 1.30835 * 108.20195 * 359.97438 * 23 22 21 25 25 N 1.34940 * 126.12977 * 273.66848 * 21 20 19 26 26 C 1.46504 * 126.03398 * 359.76492 * 25 21 20 27 27 H 1.09005 * 109.47225 * 272.11615 * 1 2 3 28 28 H 1.08999 * 109.47273 * 32.11746 * 1 2 3 29 29 H 1.08999 * 109.47079 * 152.11915 * 1 2 3 30 30 H 0.97001 * 120.00030 * 180.02562 * 6 5 3 31 31 H 1.08997 * 109.46910 * 155.28457 * 11 2 1 32 32 H 1.09000 * 109.46912 * 35.28369 * 11 2 1 33 33 H 1.09002 * 110.99314 * 37.81004 * 14 12 11 34 34 H 1.09004 * 110.99425 * 273.99265 * 14 12 11 35 35 H 1.09003 * 109.88995 * 262.88007 * 18 15 14 36 36 H 1.08996 * 110.02551 * 141.75820 * 18 15 14 37 37 H 1.09000 * 109.47076 * 317.47571 * 20 19 18 38 38 H 1.09005 * 109.46933 * 197.48020 * 20 19 18 39 39 H 1.08002 * 126.04591 * 359.97438 * 22 21 20 40 40 H 1.08006 * 125.89645 * 179.97438 * 23 22 21 41 41 H 1.09009 * 109.46890 * 89.99696 * 26 25 21 42 42 H 1.09002 * 109.46900 * 209.99412 * 26 25 21 43 43 H 1.08996 * 109.47125 * 329.99671 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.0730 1.2764 0.5529 5 6 1.6570 2.2718 -0.7105 6 7 0.6992 2.0987 -1.5967 7 14 2.3533 3.9788 -0.4093 8 1 3.7814 4.0095 -0.8149 9 1 1.5906 4.9724 -1.2071 10 1 2.2412 4.3115 1.0336 11 6 2.1975 -1.2687 -0.0006 12 6 2.3375 -1.7775 1.4356 13 1 1.3620 -2.0475 1.8401 14 6 3.2973 -2.9921 1.4863 15 6 3.7877 -2.9429 2.9574 16 1 3.0673 -3.4227 3.6199 17 9 5.0466 -3.5401 3.0830 18 6 3.8705 -1.4292 3.2458 19 7 2.9809 -0.7521 2.2845 20 6 1.9753 0.0616 2.9808 21 6 2.6095 1.3416 3.4605 22 6 2.6217 2.5224 2.7997 23 6 3.3098 3.4500 3.5888 24 7 3.6962 2.8478 4.6842 25 7 3.2663 1.5159 4.6263 26 6 3.4853 0.4942 5.6533 27 1 -0.3634 0.0379 1.0270 28 1 -0.3634 0.8704 -0.5464 29 1 -0.3633 -0.9084 -0.4806 30 1 0.3552 2.8574 -2.0935 31 1 3.1876 -1.1164 -0.4302 32 1 1.6527 -2.0025 -0.5945 33 1 4.1285 -2.8622 0.7932 34 1 2.7634 -3.9206 1.2836 35 1 4.8948 -1.0816 3.1114 36 1 3.5402 -1.2247 4.2642 37 1 1.5864 -0.4935 3.8344 38 1 1.1592 0.2945 2.2966 39 1 2.1786 2.7146 1.8337 40 1 3.4908 4.4846 3.3372 41 1 4.4204 -0.0287 5.4519 42 1 3.5383 0.9692 6.6329 43 1 2.6603 -0.2180 5.6389 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348090493.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:21:30 Heat of formation + Delta-G solvation = 79.178493 kcal Electronic energy + Delta-G solvation = -26045.413592 eV Core-core repulsion = 22464.474647 eV Total energy + Delta-G solvation = -3580.938945 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 296.171 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -47.58237 -40.77589 -38.69002 -35.17823 -33.20496 -32.22788 -31.39988 -29.30895 -28.89809 -26.56449 -25.89174 -25.41518 -24.41067 -21.53646 -21.31775 -20.51209 -19.64133 -19.01906 -17.18899 -16.52567 -16.25598 -15.95616 -15.06671 -14.91104 -14.73517 -14.30340 -14.21191 -14.12014 -13.52110 -13.24065 -13.05570 -12.80525 -12.68930 -12.45661 -12.37270 -12.21475 -11.84633 -11.56969 -11.29375 -11.07408 -10.85385 -10.73852 -10.65908 -10.53930 -10.20410 -10.08105 -9.99934 -9.86272 -9.67374 -8.82623 -8.47342 -7.97320 -7.85123 -6.44838 -5.60872 -3.26647 2.32229 2.92306 3.42207 3.44462 3.51871 3.52846 4.22993 4.37292 4.53371 4.61426 4.75909 4.78002 4.81230 5.13477 5.20359 5.30975 5.32685 5.44638 5.47514 5.51937 5.54143 5.64083 5.84115 5.89888 6.01202 6.16704 6.26345 6.27670 6.29215 6.49729 6.56600 6.81785 6.88410 6.93836 7.07075 7.30609 7.37067 7.39653 7.60274 7.82647 8.06426 8.21512 8.68049 9.32575 9.92228 10.47630 11.34630 Molecular weight = 296.17amu Principal moments of inertia in cm(-1) A = 0.012420 B = 0.008117 C = 0.005462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2253.893340 B = 3448.619887 C = 5124.863223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.107 3.893 2 N -0.584 5.584 3 C -0.230 4.230 4 H 0.081 0.919 5 C -0.004 4.004 6 N -0.902 5.902 7 Si 0.883 3.117 8 H -0.283 1.283 9 H -0.297 1.297 10 H -0.262 1.262 11 C 0.161 3.839 12 C 0.057 3.943 13 H 0.049 0.951 14 C -0.146 4.146 15 C 0.067 3.933 16 H 0.085 0.915 17 F -0.210 7.210 18 C 0.008 3.992 19 N -0.487 5.487 20 C 0.121 3.879 21 C 0.098 3.902 22 C -0.243 4.243 23 C 0.037 3.963 24 N -0.312 5.312 25 N -0.383 5.383 26 C 0.102 3.898 27 H -0.019 1.019 28 H 0.103 0.897 29 H 0.008 0.992 30 H 0.252 0.748 31 H 0.058 0.942 32 H 0.036 0.964 33 H 0.089 0.911 34 H 0.080 0.920 35 H 0.083 0.917 36 H 0.061 0.939 37 H 0.026 0.974 38 H 0.129 0.871 39 H 0.175 0.825 40 H 0.175 0.825 41 H 0.070 0.930 42 H 0.082 0.918 43 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.932 -8.006 10.751 13.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.304 5.304 3 C -0.360 4.360 4 H 0.098 0.902 5 C -0.202 4.202 6 N -0.547 5.547 7 Si 0.713 3.287 8 H -0.210 1.210 9 H -0.223 1.223 10 H -0.188 1.188 11 C 0.033 3.967 12 C -0.053 4.053 13 H 0.067 0.933 14 C -0.185 4.185 15 C 0.030 3.970 16 H 0.103 0.897 17 F -0.191 7.191 18 C -0.120 4.120 19 N -0.211 5.211 20 C -0.008 4.008 21 C -0.028 4.028 22 C -0.271 4.271 23 C -0.148 4.148 24 N -0.135 5.135 25 N -0.167 5.167 26 C -0.040 4.040 27 H -0.001 1.001 28 H 0.120 0.880 29 H 0.027 0.973 30 H 0.062 0.938 31 H 0.076 0.924 32 H 0.054 0.946 33 H 0.108 0.892 34 H 0.098 0.902 35 H 0.101 0.899 36 H 0.079 0.921 37 H 0.044 0.956 38 H 0.147 0.853 39 H 0.192 0.808 40 H 0.192 0.808 41 H 0.089 0.911 42 H 0.101 0.899 43 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 2.783 -7.516 11.528 14.040 hybrid contribution -0.435 0.230 -0.047 0.494 sum 2.348 -7.286 11.482 13.799 Atomic orbital electron populations 1.21431 0.84210 1.02109 0.96088 1.43731 1.00931 1.00748 1.85022 1.19378 1.06694 0.87404 1.22496 0.90183 1.25259 0.99477 0.99158 0.96275 1.69759 1.30211 1.29601 1.25113 0.86813 0.78722 0.84664 0.78463 1.20968 1.22349 1.18801 1.20830 0.97093 0.88832 0.89915 1.23423 0.94435 0.88383 0.99089 0.93282 1.23323 1.00929 0.99258 0.95004 1.22875 0.81113 0.93950 0.99104 0.89678 1.92793 1.43767 1.85316 1.97198 1.23779 1.00801 0.91300 0.96155 1.63346 1.18857 1.20792 1.18086 1.20943 0.94607 0.88569 0.96703 1.20904 0.97509 0.97534 0.86838 1.22211 1.09107 0.91629 1.04198 1.23816 0.98436 1.00214 0.92356 1.77194 1.23747 0.89111 1.23403 1.48377 1.44281 1.08521 1.15553 1.21799 1.01914 0.89404 0.90846 1.00086 0.87980 0.97311 0.93803 0.92396 0.94628 0.89200 0.90176 0.89860 0.92135 0.95604 0.85350 0.80778 0.80845 0.91133 0.89892 0.90333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.39 10.02 59.85 0.60 2.99 16 2 N -0.58 -13.18 1.66 -181.12 -0.30 -13.48 16 3 C -0.23 -5.71 6.39 -15.06 -0.10 -5.80 16 4 H 0.08 2.06 6.57 -52.48 -0.34 1.71 16 5 C 0.00 -0.11 5.11 -17.43 -0.09 -0.20 16 6 N -0.90 -25.02 10.90 55.49 0.60 -24.42 16 7 Si 0.88 20.68 27.68 -169.99 -4.71 15.98 16 8 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 9 H -0.30 -7.19 7.11 56.52 0.40 -6.79 16 10 H -0.26 -5.70 5.61 56.52 0.32 -5.38 16 11 C 0.16 3.07 5.51 -4.04 -0.02 3.05 16 12 C 0.06 0.89 2.76 -66.19 -0.18 0.71 16 13 H 0.05 0.75 7.81 -51.93 -0.41 0.34 16 14 C -0.15 -1.89 6.30 -24.60 -0.15 -2.04 16 15 C 0.07 0.82 4.74 -24.91 -0.12 0.71 16 16 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 17 F -0.21 -2.91 17.19 2.25 0.04 -2.87 16 18 C 0.01 0.11 5.97 -2.84 -0.02 0.10 16 19 N -0.49 -8.00 4.02 -224.81 -0.90 -8.90 16 20 C 0.12 2.04 4.07 -4.97 -0.02 2.02 16 21 C 0.10 1.80 6.20 -82.27 -0.51 1.29 16 22 C -0.24 -4.93 9.08 -40.01 -0.36 -5.30 16 23 C 0.04 0.69 12.03 -17.36 -0.21 0.48 16 24 N -0.31 -5.79 12.57 30.63 0.39 -5.40 16 25 N -0.38 -6.41 4.01 -63.88 -0.26 -6.67 16 26 C 0.10 1.21 9.46 59.85 0.57 1.78 16 27 H -0.02 -0.40 7.00 -51.93 -0.36 -0.76 16 28 H 0.10 2.63 5.09 -51.93 -0.26 2.36 16 29 H 0.01 0.17 7.92 -51.93 -0.41 -0.24 16 30 H 0.25 6.88 8.31 -40.82 -0.34 6.54 16 31 H 0.06 1.18 7.90 -51.93 -0.41 0.77 16 32 H 0.04 0.65 7.96 -51.93 -0.41 0.23 16 33 H 0.09 1.24 7.98 -51.93 -0.41 0.83 16 34 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 35 H 0.08 1.28 8.10 -51.93 -0.42 0.86 16 36 H 0.06 0.73 3.66 -51.93 -0.19 0.54 16 37 H 0.03 0.37 6.78 -51.93 -0.35 0.02 16 38 H 0.13 2.51 4.72 -51.93 -0.25 2.26 16 39 H 0.18 3.90 2.49 -52.49 -0.13 3.77 16 40 H 0.17 2.82 8.06 -52.48 -0.42 2.40 16 41 H 0.07 0.77 7.20 -51.92 -0.37 0.40 16 42 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 43 H 0.08 0.78 6.40 -51.93 -0.33 0.45 16 LS Contribution 323.87 15.07 4.88 4.88 Total: -1.00 -29.00 323.87 -6.85 -35.86 By element: Atomic # 1 Polarization: 11.24 SS G_CDS: -5.98 Total: 5.26 kcal Atomic # 6 Polarization: 0.38 SS G_CDS: -0.62 Total: -0.23 kcal Atomic # 7 Polarization: -58.40 SS G_CDS: -0.47 Total: -58.87 kcal Atomic # 9 Polarization: -2.91 SS G_CDS: 0.04 Total: -2.87 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -4.71 Total: 15.98 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -29.00 -6.85 -35.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348090493.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.035 kcal (2) G-P(sol) polarization free energy of solvation -29.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.856 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds