Wall clock time and date at job start Tue Mar 31 2020 03:27:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86804 * 120.00120 * 2 1 4 4 H 1.48496 * 109.46990 * 269.99755 * 3 2 1 5 5 H 1.48501 * 109.46724 * 29.99645 * 3 2 1 6 6 H 1.48506 * 109.47023 * 149.99336 * 3 2 1 7 7 C 1.38815 * 119.99968 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99802 * 163.07047 * 7 2 1 9 9 N 1.36937 * 119.99719 * 343.07122 * 7 2 1 10 10 C 1.46931 * 120.60956 * 331.84017 * 9 7 2 11 11 C 1.53186 * 108.77061 * 233.53659 * 10 9 7 12 12 C 1.53039 * 109.33956 * 305.41052 * 11 10 9 13 13 C 1.53035 * 109.53783 * 61.35388 * 12 11 10 14 14 H 1.09003 * 109.50109 * 58.58676 * 13 12 11 15 15 C 1.53005 * 109.49862 * 178.68273 * 13 12 11 16 16 N 1.46497 * 109.46996 * 184.99701 * 15 13 12 17 17 C 1.34779 * 120.00073 * 180.02562 * 16 15 13 18 18 O 1.21287 * 119.99787 * 359.97438 * 17 16 15 19 19 C 1.50700 * 120.00461 * 180.02562 * 17 16 15 20 20 H 1.08999 * 109.51704 * 299.87257 * 19 17 16 21 21 C 1.53180 * 109.52155 * 179.68348 * 19 17 16 22 22 C 1.53182 * 109.02893 * 183.11215 * 21 19 17 23 23 C 1.53084 * 109.16477 * 56.98061 * 22 21 19 24 24 O 1.42904 * 109.41630 * 302.38705 * 23 22 21 25 25 C 1.42902 * 114.09613 * 61.16160 * 24 23 22 26 26 C 1.46929 * 120.62462 * 151.81974 * 9 7 2 27 27 H 0.97000 * 119.99851 * 0.02562 * 1 2 3 28 28 H 1.09000 * 109.56202 * 113.76192 * 10 9 7 29 29 H 1.08998 * 109.61491 * 353.33482 * 10 9 7 30 30 H 1.09005 * 109.49759 * 185.44640 * 11 10 9 31 31 H 1.08998 * 109.50599 * 65.38228 * 11 10 9 32 32 H 1.09001 * 109.46287 * 181.37446 * 12 11 10 33 33 H 1.08999 * 109.46229 * 301.34162 * 12 11 10 34 34 H 1.08997 * 109.47028 * 304.99943 * 15 13 12 35 35 H 1.09005 * 109.46773 * 64.99842 * 15 13 12 36 36 H 0.97001 * 120.00329 * 359.97438 * 16 15 13 37 37 H 1.08999 * 109.54066 * 302.97478 * 21 19 17 38 38 H 1.08996 * 109.54257 * 63.24754 * 21 19 17 39 39 H 1.08996 * 109.52225 * 297.06646 * 22 21 19 40 40 H 1.09007 * 109.57014 * 176.91563 * 22 21 19 41 41 H 1.09008 * 109.48374 * 182.40561 * 23 22 21 42 42 H 1.09003 * 109.49158 * 62.38153 * 23 22 21 43 43 H 1.08997 * 109.47677 * 178.85897 * 25 24 23 44 44 H 1.08995 * 109.48969 * 58.82924 * 25 24 23 45 45 H 1.09001 * 109.59185 * 6.64291 * 26 9 7 46 46 H 1.09006 * 109.58608 * 246.21969 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4476 2.6527 0.7000 6 1 3.5478 1.4402 0.7002 7 6 2.0103 -1.2022 0.0005 8 1 3.0552 -1.2225 -0.2718 9 7 1.3700 -2.3622 0.3464 10 6 0.2262 -2.3392 1.2683 11 6 0.4969 -3.3190 2.4143 12 6 0.8113 -4.7007 1.8362 13 6 2.0669 -4.6174 0.9652 14 1 2.9018 -4.2538 1.5643 15 6 2.3992 -6.0056 0.4143 16 7 3.6654 -5.9491 -0.3203 17 6 4.1599 -7.0621 -0.8976 18 8 3.5567 -8.1106 -0.8085 19 6 5.4627 -7.0043 -1.6528 20 1 5.3735 -6.2992 -2.4792 21 6 5.8001 -8.3951 -2.1988 22 6 7.1626 -8.3407 -2.8968 23 6 8.2145 -7.8343 -1.9066 24 8 7.8243 -6.5509 -1.4139 25 6 6.5804 -6.5495 -0.7106 26 6 1.8137 -3.6529 -0.1978 27 1 -0.4850 0.8401 -0.0004 28 1 -0.6770 -2.6390 0.7368 29 1 0.0997 -1.3336 1.6695 30 1 -0.3839 -3.3838 3.0532 31 1 1.3463 -2.9679 3.0002 32 1 0.9803 -5.4052 2.6505 33 1 -0.0287 -5.0406 1.2305 34 1 2.4890 -6.7120 1.2394 35 1 1.6039 -6.3300 -0.2569 36 1 4.1476 -5.1105 -0.3920 37 1 5.8397 -9.1097 -1.3768 38 1 5.0362 -8.7013 -2.9135 39 1 7.1085 -7.6633 -3.7490 40 1 7.4366 -9.3380 -3.2410 41 1 9.1781 -7.7529 -2.4098 42 1 8.2971 -8.5335 -1.0744 43 1 6.3666 -5.5425 -0.3523 44 1 6.6412 -7.2317 0.1372 45 1 2.7346 -3.5136 -0.7641 46 1 1.0401 -4.0604 -0.8487 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359421746.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:27:46 Heat of formation + Delta-G solvation = -85.801603 kcal Electronic energy + Delta-G solvation = -24683.503443 eV Core-core repulsion = 21186.577978 eV Total energy + Delta-G solvation = -3496.925465 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.43636 -38.81354 -37.75380 -34.90008 -33.80440 -33.07966 -31.77270 -30.46754 -30.14688 -25.98640 -25.31572 -25.10361 -24.13851 -22.15330 -21.27602 -20.81880 -20.00283 -19.06870 -17.43395 -16.65240 -16.55606 -16.29219 -15.64592 -15.39075 -14.91072 -14.76534 -14.41893 -14.03755 -13.79241 -13.68754 -13.44503 -13.12626 -12.81781 -12.78993 -12.37891 -12.24680 -12.19656 -11.80352 -11.40494 -11.33010 -11.20393 -11.03680 -10.73759 -10.66803 -10.52477 -10.26654 -10.20724 -10.02889 -9.92595 -9.72975 -9.53250 -9.44752 -8.96562 -8.48949 -6.69681 -5.81683 -3.24806 2.60018 3.17669 3.35219 3.42605 3.44399 3.59091 4.36089 4.45874 4.55291 4.57026 4.64353 4.83669 4.98429 5.08210 5.12074 5.27355 5.30498 5.39779 5.41494 5.43824 5.49258 5.56994 5.59747 5.67328 5.80158 5.85931 5.92520 5.97470 6.02108 6.20766 6.29986 6.34861 6.47675 6.56438 6.67605 6.74609 6.83251 6.84507 6.93428 7.37452 7.53618 7.64805 7.75985 8.21919 8.41871 9.18117 9.81586 10.38433 11.26634 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.017094 B = 0.003546 C = 0.003082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1637.625333 B = 7893.983076 C = 9082.389234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.004 3.996 3 Si 0.901 3.099 4 H -0.287 1.287 5 H -0.289 1.289 6 H -0.279 1.279 7 C -0.255 4.255 8 H 0.065 0.935 9 N -0.591 5.591 10 C 0.169 3.831 11 C -0.142 4.142 12 C -0.099 4.099 13 C -0.118 4.118 14 H 0.073 0.927 15 C 0.126 3.874 16 N -0.722 5.722 17 C 0.518 3.482 18 O -0.544 6.544 19 C -0.145 4.145 20 H 0.108 0.892 21 C -0.101 4.101 22 C -0.157 4.157 23 C 0.056 3.944 24 O -0.376 6.376 25 C 0.072 3.928 26 C 0.154 3.846 27 H 0.254 0.746 28 H 0.017 0.983 29 H 0.086 0.914 30 H 0.049 0.951 31 H 0.054 0.946 32 H 0.047 0.953 33 H 0.056 0.944 34 H 0.062 0.938 35 H 0.066 0.934 36 H 0.403 0.597 37 H 0.071 0.929 38 H 0.075 0.925 39 H 0.073 0.927 40 H 0.077 0.923 41 H 0.095 0.905 42 H 0.051 0.949 43 H 0.101 0.899 44 H 0.056 0.944 45 H 0.050 0.950 46 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.744 -14.851 -0.946 18.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.195 4.195 3 Si 0.731 3.269 4 H -0.214 1.214 5 H -0.215 1.215 6 H -0.204 1.204 7 C -0.385 4.385 8 H 0.082 0.918 9 N -0.314 5.314 10 C 0.043 3.957 11 C -0.181 4.181 12 C -0.138 4.138 13 C -0.139 4.139 14 H 0.092 0.908 15 C 0.003 3.997 16 N -0.373 5.373 17 C 0.303 3.697 18 O -0.422 6.422 19 C -0.167 4.167 20 H 0.126 0.874 21 C -0.139 4.139 22 C -0.194 4.194 23 C -0.020 4.020 24 O -0.294 6.294 25 C -0.005 4.005 26 C 0.027 3.973 27 H 0.064 0.936 28 H 0.035 0.965 29 H 0.104 0.896 30 H 0.068 0.932 31 H 0.073 0.927 32 H 0.065 0.935 33 H 0.075 0.925 34 H 0.080 0.920 35 H 0.084 0.916 36 H 0.238 0.762 37 H 0.090 0.910 38 H 0.094 0.906 39 H 0.092 0.908 40 H 0.095 0.905 41 H 0.113 0.887 42 H 0.069 0.931 43 H 0.119 0.881 44 H 0.075 0.925 45 H 0.068 0.932 46 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges 11.290 -15.265 -0.909 19.008 hybrid contribution 0.321 1.070 -0.068 1.119 sum 11.610 -14.195 -0.978 18.365 Atomic orbital electron populations 1.70037 1.05305 1.25540 1.53669 1.25047 0.95262 0.98432 1.00782 0.86322 0.79186 0.83673 0.77738 1.21371 1.21549 1.20449 1.19148 0.92493 0.84828 1.42033 0.91760 1.44036 1.35929 1.01313 1.50094 1.20796 0.88549 0.98279 0.88031 1.22170 1.00109 0.95962 0.99842 1.21338 0.96731 0.97747 0.97948 1.21961 0.98878 0.93583 0.99434 0.90849 1.21477 0.84799 0.98024 0.95442 1.46147 1.24857 1.11780 1.54565 1.20374 0.86540 0.83745 0.79023 1.90687 1.61083 1.29986 1.60397 1.22033 0.93508 1.00929 1.00230 0.87436 1.21392 0.96818 0.94816 1.00898 1.22233 0.95489 1.02326 0.99398 1.22643 0.97756 0.85209 0.96422 1.87982 1.37523 1.30178 1.73735 1.22522 0.82620 1.02593 0.92813 1.20898 0.97461 0.86853 0.92070 0.93607 0.96456 0.89570 0.93185 0.92750 0.93459 0.92492 0.91982 0.91581 0.76150 0.90981 0.90636 0.90807 0.90484 0.88710 0.93054 0.88094 0.92525 0.93166 0.96399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.85 11.20 55.49 0.62 -25.23 16 2 C 0.00 0.10 4.92 -17.43 -0.09 0.01 16 3 Si 0.90 21.28 29.59 -169.99 -5.03 16.25 16 4 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.26 -6.82 9.58 -15.06 -0.14 -6.96 16 8 H 0.06 1.67 7.89 -52.49 -0.41 1.25 16 9 N -0.59 -14.34 2.99 -172.31 -0.52 -14.86 16 10 C 0.17 3.96 5.30 -3.71 -0.02 3.94 16 11 C -0.14 -2.62 6.08 -26.61 -0.16 -2.79 16 12 C -0.10 -1.61 5.17 -26.69 -0.14 -1.74 16 13 C -0.12 -1.89 2.37 -90.50 -0.21 -2.10 16 14 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 15 C 0.13 1.79 5.07 -4.04 -0.02 1.77 16 16 N -0.72 -9.21 5.23 -60.29 -0.32 -9.52 16 17 C 0.52 6.84 7.16 -10.98 -0.08 6.77 16 18 O -0.54 -9.07 15.97 5.55 0.09 -8.98 16 19 C -0.15 -1.51 2.73 -91.63 -0.25 -1.76 16 20 H 0.11 1.06 8.14 -51.93 -0.42 0.64 16 21 C -0.10 -0.99 4.62 -26.54 -0.12 -1.11 16 22 C -0.16 -1.20 6.14 -26.59 -0.16 -1.37 16 23 C 0.06 0.45 6.84 37.20 0.25 0.70 16 24 O -0.38 -3.93 10.77 -35.23 -0.38 -4.31 16 25 C 0.07 0.70 6.00 37.20 0.22 0.92 16 26 C 0.15 3.04 5.60 -3.71 -0.02 3.02 16 27 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 28 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.09 2.27 6.06 -51.93 -0.31 1.95 16 30 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 35 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.40 4.61 7.18 -40.82 -0.29 4.32 16 37 H 0.07 0.75 8.03 -51.93 -0.42 0.33 16 38 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.09 0.60 8.14 -51.92 -0.42 0.18 16 42 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 43 H 0.10 0.89 7.65 -51.93 -0.40 0.50 16 44 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 45 H 0.05 0.95 7.14 -51.93 -0.37 0.57 16 46 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 LS Contribution 357.17 15.07 5.38 5.38 Total: -1.00 -31.09 357.17 -9.20 -40.28 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: -8.11 Total: 1.69 kcal Atomic # 6 Polarization: 0.24 SS G_CDS: -0.94 Total: -0.70 kcal Atomic # 7 Polarization: -49.40 SS G_CDS: -0.21 Total: -49.61 kcal Atomic # 8 Polarization: -13.00 SS G_CDS: -0.29 Total: -13.29 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.03 Total: 16.25 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -31.09 -9.20 -40.28 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359421746.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.518 kcal (2) G-P(sol) polarization free energy of solvation -31.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds