Wall clock time and date at job start Tue Mar 31 2020 03:27:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86804 * 120.00120 * 2 1 4 4 H 1.48496 * 109.46990 * 269.99755 * 3 2 1 5 5 H 1.48501 * 109.46724 * 29.99645 * 3 2 1 6 6 H 1.48506 * 109.47023 * 149.99336 * 3 2 1 7 7 C 1.38815 * 119.99968 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99802 * 163.07047 * 7 2 1 9 9 N 1.36937 * 119.99719 * 343.07122 * 7 2 1 10 10 C 1.46931 * 120.60956 * 331.84017 * 9 7 2 11 11 C 1.53186 * 108.77061 * 233.53659 * 10 9 7 12 12 C 1.53039 * 109.33956 * 305.41052 * 11 10 9 13 13 C 1.53035 * 109.53783 * 61.35388 * 12 11 10 14 14 H 1.09003 * 109.50109 * 58.58676 * 13 12 11 15 15 C 1.53005 * 109.49862 * 178.68273 * 13 12 11 16 16 N 1.46497 * 109.46996 * 184.99701 * 15 13 12 17 17 C 1.34779 * 120.00073 * 180.02562 * 16 15 13 18 18 O 1.21287 * 119.99787 * 359.97438 * 17 16 15 19 19 C 1.50700 * 120.00461 * 180.02562 * 17 16 15 20 20 H 1.08999 * 109.51704 * 299.87257 * 19 17 16 21 21 C 1.53180 * 109.52155 * 179.68348 * 19 17 16 22 22 C 1.53182 * 109.02893 * 183.11215 * 21 19 17 23 23 C 1.53084 * 109.16477 * 56.98061 * 22 21 19 24 24 O 1.42904 * 109.41630 * 302.38705 * 23 22 21 25 25 C 1.42902 * 114.09613 * 61.16160 * 24 23 22 26 26 C 1.46929 * 120.62462 * 151.81974 * 9 7 2 27 27 H 0.97000 * 119.99851 * 0.02562 * 1 2 3 28 28 H 1.09000 * 109.56202 * 113.76192 * 10 9 7 29 29 H 1.08998 * 109.61491 * 353.33482 * 10 9 7 30 30 H 1.09005 * 109.49759 * 185.44640 * 11 10 9 31 31 H 1.08998 * 109.50599 * 65.38228 * 11 10 9 32 32 H 1.09001 * 109.46287 * 181.37446 * 12 11 10 33 33 H 1.08999 * 109.46229 * 301.34162 * 12 11 10 34 34 H 1.08997 * 109.47028 * 304.99943 * 15 13 12 35 35 H 1.09005 * 109.46773 * 64.99842 * 15 13 12 36 36 H 0.97001 * 120.00329 * 359.97438 * 16 15 13 37 37 H 1.08999 * 109.54066 * 302.97478 * 21 19 17 38 38 H 1.08996 * 109.54257 * 63.24754 * 21 19 17 39 39 H 1.08996 * 109.52225 * 297.06646 * 22 21 19 40 40 H 1.09007 * 109.57014 * 176.91563 * 22 21 19 41 41 H 1.09008 * 109.48374 * 182.40561 * 23 22 21 42 42 H 1.09003 * 109.49158 * 62.38153 * 23 22 21 43 43 H 1.08997 * 109.47677 * 178.85897 * 25 24 23 44 44 H 1.08995 * 109.48969 * 58.82924 * 25 24 23 45 45 H 1.09001 * 109.59185 * 6.64291 * 26 9 7 46 46 H 1.09006 * 109.58608 * 246.21969 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4476 2.6527 0.7000 6 1 3.5478 1.4402 0.7002 7 6 2.0103 -1.2022 0.0005 8 1 3.0552 -1.2225 -0.2718 9 7 1.3700 -2.3622 0.3464 10 6 0.2262 -2.3392 1.2683 11 6 0.4969 -3.3190 2.4143 12 6 0.8113 -4.7007 1.8362 13 6 2.0669 -4.6174 0.9652 14 1 2.9018 -4.2538 1.5643 15 6 2.3992 -6.0056 0.4143 16 7 3.6654 -5.9491 -0.3203 17 6 4.1599 -7.0621 -0.8976 18 8 3.5567 -8.1106 -0.8085 19 6 5.4627 -7.0043 -1.6528 20 1 5.3735 -6.2992 -2.4792 21 6 5.8001 -8.3951 -2.1988 22 6 7.1626 -8.3407 -2.8968 23 6 8.2145 -7.8343 -1.9066 24 8 7.8243 -6.5509 -1.4139 25 6 6.5804 -6.5495 -0.7106 26 6 1.8137 -3.6529 -0.1978 27 1 -0.4850 0.8401 -0.0004 28 1 -0.6770 -2.6390 0.7368 29 1 0.0997 -1.3336 1.6695 30 1 -0.3839 -3.3838 3.0532 31 1 1.3463 -2.9679 3.0002 32 1 0.9803 -5.4052 2.6505 33 1 -0.0287 -5.0406 1.2305 34 1 2.4890 -6.7120 1.2394 35 1 1.6039 -6.3300 -0.2569 36 1 4.1476 -5.1105 -0.3920 37 1 5.8397 -9.1097 -1.3768 38 1 5.0362 -8.7013 -2.9135 39 1 7.1085 -7.6633 -3.7490 40 1 7.4366 -9.3380 -3.2410 41 1 9.1781 -7.7529 -2.4098 42 1 8.2971 -8.5335 -1.0744 43 1 6.3666 -5.5425 -0.3523 44 1 6.6412 -7.2317 0.1372 45 1 2.7346 -3.5136 -0.7641 46 1 1.0401 -4.0604 -0.8487 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359421746.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:27:45 Heat of formation + Delta-G solvation = -105.730071 kcal Electronic energy + Delta-G solvation = -24684.367606 eV Core-core repulsion = 21186.577978 eV Total energy + Delta-G solvation = -3497.789629 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.39603 -39.82715 -39.15120 -36.30081 -34.72535 -34.57859 -32.71717 -32.28923 -31.48700 -27.32474 -27.04990 -25.89432 -25.07103 -23.81716 -22.61710 -21.87223 -21.04007 -20.49025 -18.72891 -18.23835 -17.33686 -17.24424 -16.84629 -16.54556 -16.35864 -15.90913 -15.67782 -15.28556 -15.11378 -14.91057 -14.64841 -14.48782 -14.08439 -13.96612 -13.74668 -13.57211 -13.42711 -13.00425 -12.87261 -12.58811 -12.49296 -12.26774 -12.13793 -11.97564 -11.89694 -11.81946 -11.57903 -11.43421 -11.29867 -11.10292 -10.87009 -10.52580 -10.49440 -10.08569 -8.66951 -7.86352 -5.32265 1.47680 1.49540 1.55521 1.58791 2.16446 2.51979 2.89073 3.28928 3.56768 3.59835 3.76201 3.79036 3.98105 3.99060 4.01528 4.06863 4.14916 4.26145 4.41032 4.45120 4.57621 4.61770 4.62177 4.71126 4.76462 4.81101 4.88271 4.90166 4.92859 5.01064 5.04717 5.10722 5.12366 5.22971 5.31145 5.33805 5.39032 5.48028 5.57759 5.67517 5.78641 6.16530 6.39575 6.50590 7.15713 7.17777 7.87050 8.39068 9.19976 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.017094 B = 0.003546 C = 0.003082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1637.625333 B = 7893.983076 C = 9082.389234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.052 4.052 3 Si 0.966 3.034 4 H -0.286 1.286 5 H -0.295 1.295 6 H -0.267 1.267 7 C -0.262 4.262 8 H 0.071 0.929 9 N -0.609 5.609 10 C 0.173 3.827 11 C -0.130 4.130 12 C -0.097 4.097 13 C -0.100 4.100 14 H 0.079 0.921 15 C 0.137 3.863 16 N -0.717 5.717 17 C 0.519 3.481 18 O -0.580 6.580 19 C -0.139 4.139 20 H 0.115 0.885 21 C -0.102 4.102 22 C -0.150 4.150 23 C 0.050 3.950 24 O -0.392 6.392 25 C 0.074 3.926 26 C 0.152 3.848 27 H 0.249 0.751 28 H -0.009 1.009 29 H 0.051 0.949 30 H 0.068 0.932 31 H 0.054 0.946 32 H 0.080 0.920 33 H 0.053 0.947 34 H 0.073 0.927 35 H 0.055 0.945 36 H 0.411 0.589 37 H 0.063 0.937 38 H 0.065 0.935 39 H 0.074 0.926 40 H 0.094 0.906 41 H 0.112 0.888 42 H 0.058 0.942 43 H 0.109 0.891 44 H 0.058 0.942 45 H 0.057 0.943 46 H 0.004 0.996 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.819 -15.850 -0.529 21.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.247 4.247 3 Si 0.794 3.206 4 H -0.212 1.212 5 H -0.222 1.222 6 H -0.192 1.192 7 C -0.393 4.393 8 H 0.089 0.911 9 N -0.333 5.333 10 C 0.047 3.953 11 C -0.169 4.169 12 C -0.135 4.135 13 C -0.120 4.120 14 H 0.097 0.903 15 C 0.013 3.987 16 N -0.369 5.369 17 C 0.306 3.694 18 O -0.460 6.460 19 C -0.160 4.160 20 H 0.133 0.867 21 C -0.140 4.140 22 C -0.187 4.187 23 C -0.026 4.026 24 O -0.310 6.310 25 C -0.003 4.003 26 C 0.027 3.973 27 H 0.058 0.942 28 H 0.009 0.991 29 H 0.070 0.930 30 H 0.087 0.913 31 H 0.073 0.927 32 H 0.099 0.901 33 H 0.072 0.928 34 H 0.091 0.909 35 H 0.073 0.927 36 H 0.248 0.752 37 H 0.082 0.918 38 H 0.084 0.916 39 H 0.092 0.908 40 H 0.113 0.887 41 H 0.130 0.870 42 H 0.076 0.924 43 H 0.127 0.873 44 H 0.076 0.924 45 H 0.076 0.924 46 H 0.022 0.978 Dipole moment (debyes) X Y Z Total from point charges 13.399 -16.278 -0.492 21.089 hybrid contribution -0.339 1.332 -0.245 1.396 sum 13.060 -14.946 -0.737 19.862 Atomic orbital electron populations 1.70200 1.06805 1.25779 1.55504 1.25811 0.95971 1.01578 1.01336 0.85308 0.78194 0.79602 0.77531 1.21242 1.22170 1.19203 1.19547 0.92970 0.85915 1.40818 0.91101 1.44310 1.35893 1.02273 1.50778 1.20632 0.87664 0.97767 0.89249 1.21994 1.00969 0.95925 0.97989 1.21338 0.96555 0.96766 0.98880 1.21719 0.99117 0.93443 0.97765 0.90313 1.21274 0.85136 0.96730 0.95606 1.46106 1.24381 1.12196 1.54194 1.20822 0.87053 0.83038 0.78473 1.90673 1.62279 1.31275 1.61758 1.22025 0.92181 1.01613 1.00204 0.86747 1.21394 0.97882 0.94162 1.00542 1.22201 0.94035 1.03433 0.99060 1.22849 0.98495 0.84454 0.96813 1.87965 1.37521 1.31636 1.73914 1.22522 0.82191 1.03069 0.92505 1.21030 0.97070 0.85774 0.93474 0.94221 0.99066 0.93045 0.91318 0.92734 0.90119 0.92795 0.90869 0.92688 0.75219 0.91801 0.91626 0.90755 0.88708 0.86975 0.92410 0.87333 0.92382 0.92429 0.97827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.31 11.20 21.65 0.24 -55.07 16 2 C -0.05 -2.85 4.92 84.86 0.42 -2.43 16 3 Si 0.97 44.12 29.59 68.60 2.03 46.15 16 4 H -0.29 -12.89 7.11 99.48 0.71 -12.18 16 5 H -0.30 -13.64 7.11 99.48 0.71 -12.94 16 6 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 7 C -0.26 -14.03 9.58 84.03 0.81 -13.23 16 8 H 0.07 3.62 7.89 -2.91 -0.02 3.59 16 9 N -0.61 -29.72 2.99 -699.07 -2.09 -31.81 16 10 C 0.17 8.23 5.30 86.36 0.46 8.69 16 11 C -0.13 -4.64 6.08 30.67 0.19 -4.46 16 12 C -0.10 -2.92 5.17 30.62 0.16 -2.76 16 13 C -0.10 -3.00 2.37 -10.71 -0.03 -3.03 16 14 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 15 C 0.14 3.61 5.07 86.38 0.44 4.05 16 16 N -0.72 -17.03 5.23 -463.05 -2.42 -19.45 16 17 C 0.52 13.05 7.16 87.66 0.63 13.68 16 18 O -0.58 -18.85 15.97 -3.05 -0.05 -18.90 16 19 C -0.14 -2.67 2.73 -11.45 -0.03 -2.70 16 20 H 0.11 2.06 8.14 -2.39 -0.02 2.04 16 21 C -0.10 -1.86 4.62 30.72 0.14 -1.72 16 22 C -0.15 -1.98 6.14 30.68 0.19 -1.79 16 23 C 0.05 0.68 6.84 72.01 0.49 1.17 16 24 O -0.39 -7.37 10.77 -148.98 -1.60 -8.97 16 25 C 0.07 1.30 6.00 72.01 0.43 1.73 16 26 C 0.15 5.92 5.60 86.36 0.48 6.40 16 27 H 0.25 14.26 8.31 -92.71 -0.77 13.49 16 28 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 29 H 0.05 2.79 6.06 -2.39 -0.01 2.78 16 30 H 0.07 2.19 8.14 -2.38 -0.02 2.17 16 31 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 32 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 33 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 34 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 35 H 0.05 1.60 8.14 -2.38 -0.02 1.59 16 36 H 0.41 8.56 7.18 -92.71 -0.67 7.89 16 37 H 0.06 1.27 8.03 -2.39 -0.02 1.25 16 38 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 39 H 0.07 0.99 8.14 -2.39 -0.02 0.98 16 40 H 0.09 0.93 8.14 -2.38 -0.02 0.91 16 41 H 0.11 1.12 8.14 -2.38 -0.02 1.10 16 42 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 43 H 0.11 1.68 7.65 -2.39 -0.02 1.67 16 44 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 45 H 0.06 2.11 7.14 -2.39 -0.02 2.09 16 46 H 0.00 0.16 8.14 -2.38 -0.02 0.14 16 Total: -1.00 -67.74 357.17 1.16 -66.59 By element: Atomic # 1 Polarization: 17.60 SS G_CDS: 0.28 Total: 17.88 kcal Atomic # 6 Polarization: -1.18 SS G_CDS: 4.77 Total: 3.59 kcal Atomic # 7 Polarization: -102.06 SS G_CDS: -4.27 Total: -106.33 kcal Atomic # 8 Polarization: -26.22 SS G_CDS: -1.65 Total: -27.87 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.15 kcal Total: -67.74 1.16 -66.59 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359421746.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.144 kcal (2) G-P(sol) polarization free energy of solvation -67.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds