Wall clock time and date at job start Tue Mar 31 2020 03:27:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86790 * 120.00214 * 2 1 4 4 H 1.48505 * 109.47190 * 269.99775 * 3 2 1 5 5 H 1.48506 * 109.47482 * 29.99461 * 3 2 1 6 6 H 1.48499 * 109.47268 * 149.99669 * 3 2 1 7 7 C 1.38816 * 119.99762 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00198 * 163.07867 * 7 2 1 9 9 N 1.36939 * 119.99729 * 343.08298 * 7 2 1 10 10 C 1.46929 * 120.63042 * 331.82034 * 9 7 2 11 11 C 1.53189 * 108.77412 * 233.61315 * 10 9 7 12 12 C 1.53043 * 109.31562 * 305.36555 * 11 10 9 13 13 C 1.53039 * 109.53461 * 61.36816 * 12 11 10 14 14 H 1.08996 * 109.49841 * 58.61799 * 13 12 11 15 15 C 1.52997 * 109.49537 * 178.68431 * 13 12 11 16 16 N 1.46499 * 109.47146 * 184.93545 * 15 13 12 17 17 C 1.34776 * 120.00175 * 179.72475 * 16 15 13 18 18 O 1.21282 * 119.99866 * 0.27434 * 17 16 15 19 19 C 1.50703 * 120.00317 * 180.27474 * 17 16 15 20 20 C 1.52991 * 109.47377 * 179.97438 * 19 17 16 21 21 H 1.08999 * 110.27342 * 54.29918 * 20 19 17 22 22 C 1.54944 * 110.30972 * 176.39065 * 20 19 17 23 23 C 1.55415 * 100.89405 * 155.29130 * 22 20 19 24 24 C 1.54384 * 102.30854 * 325.98955 * 23 22 20 25 25 O 1.43240 * 107.58789 * 21.28682 * 24 23 22 26 26 C 1.46933 * 120.60357 * 151.84953 * 9 7 2 27 27 H 0.96999 * 119.99500 * 0.02562 * 1 2 3 28 28 H 1.09000 * 109.57937 * 113.82922 * 10 9 7 29 29 H 1.08994 * 109.58523 * 353.40357 * 10 9 7 30 30 H 1.09007 * 109.49662 * 185.41437 * 11 10 9 31 31 H 1.08995 * 109.52851 * 65.33769 * 11 10 9 32 32 H 1.09000 * 109.45734 * 301.34851 * 12 11 10 33 33 H 1.09004 * 109.44953 * 181.37923 * 12 11 10 34 34 H 1.08997 * 109.47386 * 64.93603 * 15 13 12 35 35 H 1.09005 * 109.47187 * 304.93201 * 15 13 12 36 36 H 0.96999 * 119.99944 * 359.97438 * 16 15 13 37 37 H 1.09004 * 109.46694 * 300.00072 * 19 17 16 38 38 H 1.09003 * 109.46609 * 59.99819 * 19 17 16 39 39 H 1.09006 * 111.12684 * 273.27892 * 22 20 19 40 40 H 1.08990 * 111.12829 * 37.44056 * 22 20 19 41 41 H 1.09006 * 110.88304 * 207.75644 * 23 22 20 42 42 H 1.08996 * 110.76383 * 84.17200 * 23 22 20 43 43 H 1.08998 * 109.82798 * 261.77085 * 24 23 22 44 44 H 1.09001 * 109.83249 * 140.79922 * 24 23 22 45 45 H 1.09000 * 109.61423 * 6.61946 * 26 9 7 46 46 H 1.09000 * 109.56356 * 246.18698 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4979 2.0463 -1.4001 5 1 1.4477 2.6527 0.6999 6 1 3.5478 1.4401 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 3.0552 -1.2227 -0.2717 9 7 1.3699 -2.3623 0.3462 10 6 0.2261 -2.3399 1.2681 11 6 0.4979 -3.3188 2.4147 12 6 0.8124 -4.7006 1.8368 13 6 2.0677 -4.6171 0.9653 14 1 2.9028 -4.2537 1.5640 15 6 2.4001 -6.0053 0.4145 16 7 3.6653 -5.9483 -0.3219 17 6 4.1627 -7.0626 -0.8941 18 8 3.5603 -8.1114 -0.8036 19 6 5.4672 -7.0054 -1.6464 20 6 5.8028 -8.3948 -2.1919 21 1 4.9729 -8.7780 -2.7856 22 6 7.0946 -8.3398 -3.0457 23 6 7.5849 -9.8102 -2.9316 24 6 7.1488 -10.1924 -1.5008 25 8 6.1017 -9.2952 -1.1133 26 6 1.8145 -3.6527 -0.1978 27 1 -0.4849 0.8401 -0.0004 28 1 -0.6770 -2.6407 0.7371 29 1 0.0993 -1.3341 1.6686 30 1 -0.3826 -3.3837 3.0541 31 1 1.3474 -2.9673 3.0002 32 1 -0.0279 -5.0409 1.2317 33 1 0.9821 -5.4046 2.6514 34 1 1.6042 -6.3306 -0.2553 35 1 2.4916 -6.7113 1.2400 36 1 4.1468 -5.1095 -0.3945 37 1 5.3789 -6.3014 -2.4739 38 1 6.2603 -6.6782 -0.9740 39 1 6.8710 -8.0778 -4.0800 40 1 7.8205 -7.6498 -2.6159 41 1 8.6685 -9.8675 -3.0352 42 1 7.0896 -10.4410 -3.6697 43 1 7.9927 -10.0929 -0.8181 44 1 6.7804 -11.2182 -1.4881 45 1 2.7355 -3.5134 -0.7640 46 1 1.0411 -4.0604 -0.8487 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359425076.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:27:38 Heat of formation + Delta-G solvation = -80.796070 kcal Electronic energy + Delta-G solvation = -24262.659691 eV Core-core repulsion = 20765.951282 eV Total energy + Delta-G solvation = -3496.708409 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.08004 -38.99243 -37.69836 -34.72612 -33.01627 -32.55546 -31.91961 -30.44826 -30.25805 -27.15792 -25.33211 -24.92653 -22.25503 -22.01603 -21.62155 -20.85287 -20.12800 -19.00933 -17.33248 -16.83831 -16.54027 -16.15095 -15.51263 -15.40430 -14.83676 -14.72834 -14.23583 -13.97300 -13.59068 -13.44710 -13.40700 -12.91691 -12.75814 -12.48581 -12.33513 -12.16028 -12.00856 -11.90966 -11.49180 -11.38950 -11.25405 -11.10931 -11.02279 -10.70318 -10.49071 -10.23651 -10.17354 -9.94275 -9.75714 -9.63810 -9.48131 -9.41452 -8.81761 -8.47714 -6.67787 -5.80478 -3.23386 2.83062 3.33931 3.35078 3.42488 3.44245 3.62626 4.18342 4.45850 4.47068 4.61595 4.81993 4.87530 4.97352 5.12882 5.21215 5.29074 5.31830 5.38036 5.43793 5.46217 5.48487 5.50603 5.60167 5.63490 5.71351 5.85925 5.91607 6.00635 6.03682 6.26342 6.35499 6.39877 6.59295 6.60242 6.72253 6.79597 6.87266 6.91668 6.97965 7.39864 7.66413 7.70115 7.76914 8.42075 8.43315 9.19435 9.83132 10.40274 11.27849 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.021336 B = 0.002971 C = 0.002680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.045967 B = 9421.534993 C =10445.853173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.002 3.998 3 Si 0.902 3.098 4 H -0.287 1.287 5 H -0.290 1.290 6 H -0.279 1.279 7 C -0.254 4.254 8 H 0.064 0.936 9 N -0.592 5.592 10 C 0.169 3.831 11 C -0.142 4.142 12 C -0.100 4.100 13 C -0.117 4.117 14 H 0.072 0.928 15 C 0.128 3.872 16 N -0.727 5.727 17 C 0.512 3.488 18 O -0.536 6.536 19 C -0.143 4.143 20 C 0.098 3.902 21 H 0.079 0.921 22 C -0.154 4.154 23 C -0.156 4.156 24 C 0.048 3.952 25 O -0.366 6.366 26 C 0.155 3.845 27 H 0.254 0.746 28 H 0.017 0.983 29 H 0.086 0.914 30 H 0.049 0.951 31 H 0.053 0.947 32 H 0.056 0.944 33 H 0.047 0.953 34 H 0.064 0.936 35 H 0.060 0.940 36 H 0.402 0.598 37 H 0.107 0.893 38 H 0.099 0.901 39 H 0.085 0.915 40 H 0.080 0.920 41 H 0.081 0.919 42 H 0.076 0.924 43 H 0.066 0.934 44 H 0.066 0.934 45 H 0.050 0.950 46 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.898 -15.416 -3.269 20.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.196 4.196 3 Si 0.731 3.269 4 H -0.214 1.214 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.383 4.383 8 H 0.082 0.918 9 N -0.314 5.314 10 C 0.044 3.956 11 C -0.181 4.181 12 C -0.138 4.138 13 C -0.138 4.138 14 H 0.091 0.909 15 C 0.004 3.996 16 N -0.379 5.379 17 C 0.297 3.703 18 O -0.413 6.413 19 C -0.184 4.184 20 C 0.040 3.960 21 H 0.096 0.904 22 C -0.192 4.192 23 C -0.194 4.194 24 C -0.029 4.029 25 O -0.285 6.285 26 C 0.028 3.972 27 H 0.064 0.936 28 H 0.035 0.965 29 H 0.104 0.896 30 H 0.068 0.932 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.065 0.935 34 H 0.082 0.918 35 H 0.079 0.921 36 H 0.236 0.764 37 H 0.125 0.875 38 H 0.118 0.882 39 H 0.104 0.896 40 H 0.099 0.901 41 H 0.099 0.901 42 H 0.095 0.905 43 H 0.084 0.916 44 H 0.084 0.916 45 H 0.068 0.932 46 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges 12.228 -16.010 -3.009 20.369 hybrid contribution 0.755 1.314 -0.230 1.533 sum 12.984 -14.696 -3.239 19.875 Atomic orbital electron populations 1.70041 1.05293 1.25507 1.53743 1.25051 0.95273 0.98424 1.00890 0.86318 0.79163 0.83708 0.77688 1.21413 1.21562 1.20496 1.19142 0.92452 0.84850 1.41900 0.91807 1.44041 1.35918 1.01337 1.50125 1.20794 0.88554 0.98268 0.88034 1.22173 1.00081 0.96013 0.99822 1.21342 0.96784 0.97687 0.97981 1.21947 0.98785 0.93716 0.99358 0.90942 1.21421 0.84965 0.97795 0.95403 1.46098 1.24897 1.11672 1.55258 1.20457 0.86735 0.83675 0.79396 1.90708 1.60862 1.29684 1.60041 1.21882 0.96631 0.98149 1.01692 1.22675 0.96649 0.88887 0.87744 0.90352 1.23367 0.97421 0.97079 1.01304 1.23131 1.02097 0.96556 0.97573 1.23109 0.90714 0.94186 0.94850 1.88559 1.54779 1.47436 1.37765 1.20893 0.97407 0.86783 0.92111 0.93621 0.96451 0.89599 0.93207 0.92778 0.92501 0.93456 0.91758 0.92142 0.76367 0.87513 0.88234 0.89642 0.90095 0.90081 0.90519 0.91570 0.91618 0.93175 0.96402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.97 11.20 55.49 0.62 -25.34 16 2 C 0.00 0.06 4.92 -17.43 -0.09 -0.02 16 3 Si 0.90 21.29 29.59 -169.99 -5.03 16.26 16 4 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.25 -6.80 9.58 -15.06 -0.14 -6.94 16 8 H 0.06 1.66 7.89 -52.49 -0.41 1.24 16 9 N -0.59 -14.49 2.99 -172.31 -0.52 -15.01 16 10 C 0.17 4.00 5.30 -3.71 -0.02 3.98 16 11 C -0.14 -2.68 6.08 -26.61 -0.16 -2.84 16 12 C -0.10 -1.67 5.17 -26.69 -0.14 -1.81 16 13 C -0.12 -1.95 2.37 -90.50 -0.21 -2.17 16 14 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 15 C 0.13 1.94 5.07 -4.04 -0.02 1.92 16 16 N -0.73 -9.88 5.33 -60.29 -0.32 -10.20 16 17 C 0.51 7.28 7.74 -10.98 -0.09 7.19 16 18 O -0.54 -9.78 15.56 -4.41 -0.07 -9.85 16 19 C -0.14 -1.45 5.44 -27.89 -0.15 -1.60 16 20 C 0.10 1.04 2.91 -25.71 -0.07 0.97 16 21 H 0.08 0.92 7.96 -51.93 -0.41 0.51 16 22 C -0.15 -1.10 6.58 -24.42 -0.16 -1.26 16 23 C -0.16 -1.05 7.02 -24.72 -0.17 -1.22 16 24 C 0.05 0.44 7.80 37.88 0.30 0.73 16 25 O -0.37 -4.76 10.50 -45.20 -0.47 -5.23 16 26 C 0.15 3.11 5.60 -3.71 -0.02 3.08 16 27 H 0.25 7.06 8.31 -40.82 -0.34 6.73 16 28 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.09 2.28 6.06 -51.93 -0.31 1.96 16 30 H 0.05 0.85 8.14 -51.92 -0.42 0.43 16 31 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 33 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 36 H 0.40 4.78 7.70 -40.82 -0.31 4.46 16 37 H 0.11 0.82 8.14 -51.93 -0.42 0.39 16 38 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.08 0.52 8.06 -51.93 -0.42 0.10 16 41 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 42 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.05 0.95 7.14 -51.93 -0.37 0.58 16 46 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 LS Contribution 361.44 15.07 5.45 5.45 Total: -1.00 -32.66 361.44 -9.64 -42.31 By element: Atomic # 1 Polarization: 9.76 SS G_CDS: -8.14 Total: 1.62 kcal Atomic # 6 Polarization: 1.16 SS G_CDS: -1.16 Total: 0.00 kcal Atomic # 7 Polarization: -50.33 SS G_CDS: -0.22 Total: -50.55 kcal Atomic # 8 Polarization: -14.54 SS G_CDS: -0.54 Total: -15.08 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.03 Total: 16.26 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -32.66 -9.64 -42.31 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359425076.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.490 kcal (2) G-P(sol) polarization free energy of solvation -32.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds