Wall clock time and date at job start Tue Mar 31 2020 03:27:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86790 * 120.00214 * 2 1 4 4 H 1.48505 * 109.47190 * 269.99775 * 3 2 1 5 5 H 1.48506 * 109.47482 * 29.99461 * 3 2 1 6 6 H 1.48499 * 109.47268 * 149.99669 * 3 2 1 7 7 C 1.38816 * 119.99762 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00198 * 163.07867 * 7 2 1 9 9 N 1.36939 * 119.99729 * 343.08298 * 7 2 1 10 10 C 1.46929 * 120.63042 * 331.82034 * 9 7 2 11 11 C 1.53189 * 108.77412 * 233.61315 * 10 9 7 12 12 C 1.53043 * 109.31562 * 305.36555 * 11 10 9 13 13 C 1.53039 * 109.53461 * 61.36816 * 12 11 10 14 14 H 1.08996 * 109.49841 * 58.61799 * 13 12 11 15 15 C 1.52997 * 109.49537 * 178.68431 * 13 12 11 16 16 N 1.46499 * 109.47146 * 184.93545 * 15 13 12 17 17 C 1.34776 * 120.00175 * 179.72475 * 16 15 13 18 18 O 1.21282 * 119.99866 * 0.27434 * 17 16 15 19 19 C 1.50703 * 120.00317 * 180.27474 * 17 16 15 20 20 C 1.52991 * 109.47377 * 179.97438 * 19 17 16 21 21 H 1.08999 * 110.27342 * 54.29918 * 20 19 17 22 22 C 1.54944 * 110.30972 * 176.39065 * 20 19 17 23 23 C 1.55415 * 100.89405 * 155.29130 * 22 20 19 24 24 C 1.54384 * 102.30854 * 325.98955 * 23 22 20 25 25 O 1.43240 * 107.58789 * 21.28682 * 24 23 22 26 26 C 1.46933 * 120.60357 * 151.84953 * 9 7 2 27 27 H 0.96999 * 119.99500 * 0.02562 * 1 2 3 28 28 H 1.09000 * 109.57937 * 113.82922 * 10 9 7 29 29 H 1.08994 * 109.58523 * 353.40357 * 10 9 7 30 30 H 1.09007 * 109.49662 * 185.41437 * 11 10 9 31 31 H 1.08995 * 109.52851 * 65.33769 * 11 10 9 32 32 H 1.09000 * 109.45734 * 301.34851 * 12 11 10 33 33 H 1.09004 * 109.44953 * 181.37923 * 12 11 10 34 34 H 1.08997 * 109.47386 * 64.93603 * 15 13 12 35 35 H 1.09005 * 109.47187 * 304.93201 * 15 13 12 36 36 H 0.96999 * 119.99944 * 359.97438 * 16 15 13 37 37 H 1.09004 * 109.46694 * 300.00072 * 19 17 16 38 38 H 1.09003 * 109.46609 * 59.99819 * 19 17 16 39 39 H 1.09006 * 111.12684 * 273.27892 * 22 20 19 40 40 H 1.08990 * 111.12829 * 37.44056 * 22 20 19 41 41 H 1.09006 * 110.88304 * 207.75644 * 23 22 20 42 42 H 1.08996 * 110.76383 * 84.17200 * 23 22 20 43 43 H 1.08998 * 109.82798 * 261.77085 * 24 23 22 44 44 H 1.09001 * 109.83249 * 140.79922 * 24 23 22 45 45 H 1.09000 * 109.61423 * 6.61946 * 26 9 7 46 46 H 1.09000 * 109.56356 * 246.18698 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4979 2.0463 -1.4001 5 1 1.4477 2.6527 0.6999 6 1 3.5478 1.4401 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 3.0552 -1.2227 -0.2717 9 7 1.3699 -2.3623 0.3462 10 6 0.2261 -2.3399 1.2681 11 6 0.4979 -3.3188 2.4147 12 6 0.8124 -4.7006 1.8368 13 6 2.0677 -4.6171 0.9653 14 1 2.9028 -4.2537 1.5640 15 6 2.4001 -6.0053 0.4145 16 7 3.6653 -5.9483 -0.3219 17 6 4.1627 -7.0626 -0.8941 18 8 3.5603 -8.1114 -0.8036 19 6 5.4672 -7.0054 -1.6464 20 6 5.8028 -8.3948 -2.1919 21 1 4.9729 -8.7780 -2.7856 22 6 7.0946 -8.3398 -3.0457 23 6 7.5849 -9.8102 -2.9316 24 6 7.1488 -10.1924 -1.5008 25 8 6.1017 -9.2952 -1.1133 26 6 1.8145 -3.6527 -0.1978 27 1 -0.4849 0.8401 -0.0004 28 1 -0.6770 -2.6407 0.7371 29 1 0.0993 -1.3341 1.6686 30 1 -0.3826 -3.3837 3.0541 31 1 1.3474 -2.9673 3.0002 32 1 -0.0279 -5.0409 1.2317 33 1 0.9821 -5.4046 2.6514 34 1 1.6042 -6.3306 -0.2553 35 1 2.4916 -6.7113 1.2400 36 1 4.1468 -5.1095 -0.3945 37 1 5.3789 -6.3014 -2.4739 38 1 6.2603 -6.6782 -0.9740 39 1 6.8710 -8.0778 -4.0800 40 1 7.8205 -7.6498 -2.6159 41 1 8.6685 -9.8675 -3.0352 42 1 7.0896 -10.4410 -3.6697 43 1 7.9927 -10.0929 -0.8181 44 1 6.7804 -11.2182 -1.4881 45 1 2.7355 -3.5134 -0.7640 46 1 1.0411 -4.0604 -0.8487 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359425076.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:27:37 Heat of formation + Delta-G solvation = -101.852055 kcal Electronic energy + Delta-G solvation = -24263.572747 eV Core-core repulsion = 20765.951282 eV Total energy + Delta-G solvation = -3497.621465 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.05508 -40.00051 -39.19804 -36.20697 -34.64534 -33.39346 -32.69429 -32.28893 -31.70340 -28.08986 -27.22245 -26.19311 -23.83610 -22.99191 -22.48367 -22.13866 -21.28530 -20.50750 -18.69319 -18.11317 -17.61806 -17.12117 -16.80582 -16.49134 -16.43888 -15.84450 -15.57930 -15.34037 -15.04773 -14.79700 -14.51109 -14.16510 -14.01452 -13.75663 -13.69584 -13.58035 -13.00874 -12.89782 -12.85826 -12.58733 -12.48946 -12.25990 -12.14602 -12.06549 -11.96948 -11.81843 -11.65191 -11.57838 -11.33360 -11.09754 -10.74954 -10.51959 -10.42777 -10.00934 -8.66500 -7.85598 -5.31564 1.48050 1.50137 1.59399 1.74334 2.28947 2.52573 2.93043 3.29580 3.58863 3.60912 3.77192 3.94612 4.00235 4.02207 4.03943 4.08298 4.22050 4.30345 4.40653 4.52124 4.59002 4.62479 4.66338 4.73329 4.79271 4.86056 4.88667 4.92669 4.93593 5.01898 5.03636 5.08555 5.10603 5.24605 5.30240 5.33611 5.40403 5.53104 5.58666 5.67841 5.78388 6.19485 6.40317 6.63010 7.16051 7.33830 7.87421 8.40005 9.20943 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.021336 B = 0.002971 C = 0.002680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.045967 B = 9421.534993 C =10445.853173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.054 4.054 3 Si 0.968 3.032 4 H -0.285 1.285 5 H -0.296 1.296 6 H -0.267 1.267 7 C -0.261 4.261 8 H 0.072 0.928 9 N -0.610 5.610 10 C 0.173 3.827 11 C -0.130 4.130 12 C -0.098 4.098 13 C -0.099 4.099 14 H 0.076 0.924 15 C 0.138 3.862 16 N -0.722 5.722 17 C 0.507 3.493 18 O -0.582 6.582 19 C -0.136 4.136 20 C 0.089 3.911 21 H 0.056 0.944 22 C -0.144 4.144 23 C -0.150 4.150 24 C 0.038 3.962 25 O -0.403 6.403 26 C 0.154 3.846 27 H 0.249 0.751 28 H -0.008 1.008 29 H 0.052 0.948 30 H 0.068 0.932 31 H 0.053 0.947 32 H 0.053 0.947 33 H 0.077 0.923 34 H 0.052 0.948 35 H 0.064 0.936 36 H 0.412 0.588 37 H 0.136 0.864 38 H 0.118 0.882 39 H 0.101 0.899 40 H 0.094 0.906 41 H 0.102 0.898 42 H 0.078 0.922 43 H 0.076 0.924 44 H 0.062 0.938 45 H 0.060 0.940 46 H 0.004 0.996 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.489 -15.798 -3.389 22.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.249 4.249 3 Si 0.796 3.204 4 H -0.211 1.211 5 H -0.223 1.223 6 H -0.192 1.192 7 C -0.391 4.391 8 H 0.090 0.910 9 N -0.333 5.333 10 C 0.047 3.953 11 C -0.169 4.169 12 C -0.136 4.136 13 C -0.120 4.120 14 H 0.095 0.905 15 C 0.014 3.986 16 N -0.374 5.374 17 C 0.295 3.705 18 O -0.462 6.462 19 C -0.176 4.176 20 C 0.031 3.969 21 H 0.074 0.926 22 C -0.182 4.182 23 C -0.188 4.188 24 C -0.039 4.039 25 O -0.324 6.324 26 C 0.028 3.972 27 H 0.058 0.942 28 H 0.010 0.990 29 H 0.070 0.930 30 H 0.087 0.913 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.096 0.904 34 H 0.071 0.929 35 H 0.082 0.918 36 H 0.248 0.752 37 H 0.154 0.846 38 H 0.136 0.864 39 H 0.120 0.880 40 H 0.113 0.887 41 H 0.121 0.879 42 H 0.097 0.903 43 H 0.094 0.906 44 H 0.080 0.920 45 H 0.078 0.922 46 H 0.022 0.978 Dipole moment (debyes) X Y Z Total from point charges 14.858 -16.400 -3.134 22.351 hybrid contribution -0.084 1.371 -0.211 1.389 sum 14.774 -15.030 -3.344 21.339 Atomic orbital electron populations 1.70207 1.06847 1.25780 1.55567 1.25839 0.95997 1.01663 1.01405 0.85278 0.78140 0.79483 0.77545 1.21142 1.22284 1.19192 1.19552 0.92979 0.85850 1.40707 0.90988 1.44317 1.35862 1.02316 1.50777 1.20627 0.87727 0.97721 0.89217 1.21999 1.00941 0.95882 0.98051 1.21345 0.96643 0.96789 0.98847 1.21706 0.98950 0.93465 0.97834 0.90518 1.21190 0.85506 0.96543 0.95380 1.46065 1.24340 1.12218 1.54813 1.21221 0.87661 0.82807 0.78846 1.90688 1.62437 1.31338 1.61730 1.21962 0.94435 0.98761 1.02430 1.22780 0.97766 0.88591 0.87724 0.92554 1.23353 0.95671 0.97605 1.01549 1.23138 1.03417 0.96304 0.95920 1.23308 0.90272 0.93565 0.96729 1.88519 1.56082 1.48502 1.39251 1.21012 0.97164 0.85639 0.93348 0.94232 0.99018 0.92987 0.91322 0.92772 0.92797 0.90421 0.92919 0.91771 0.75161 0.84637 0.86392 0.88010 0.88735 0.87915 0.90288 0.90591 0.91959 0.92151 0.97805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.49 11.20 21.65 0.24 -55.24 16 2 C -0.05 -2.97 4.92 84.86 0.42 -2.56 16 3 Si 0.97 43.97 29.59 68.60 2.03 46.00 16 4 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 5 H -0.30 -13.67 7.11 99.48 0.71 -12.96 16 6 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 7 C -0.26 -13.93 9.58 84.03 0.81 -13.12 16 8 H 0.07 3.65 7.89 -2.91 -0.02 3.63 16 9 N -0.61 -29.93 2.99 -699.07 -2.09 -32.02 16 10 C 0.17 8.34 5.30 86.36 0.46 8.80 16 11 C -0.13 -4.77 6.08 30.67 0.19 -4.58 16 12 C -0.10 -3.10 5.17 30.62 0.16 -2.94 16 13 C -0.10 -3.13 2.37 -10.72 -0.03 -3.15 16 14 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 15 C 0.14 3.98 5.07 86.38 0.44 4.42 16 16 N -0.72 -18.37 5.33 -463.06 -2.47 -20.84 16 17 C 0.51 13.83 7.74 87.66 0.68 14.51 16 18 O -0.58 -21.27 15.56 6.50 0.10 -21.17 16 19 C -0.14 -2.45 5.44 29.85 0.16 -2.29 16 20 C 0.09 1.78 2.91 31.26 0.09 1.87 16 21 H 0.06 1.33 7.96 -2.39 -0.02 1.31 16 22 C -0.14 -1.66 6.58 32.09 0.21 -1.45 16 23 C -0.15 -1.68 7.02 31.89 0.22 -1.45 16 24 C 0.04 0.64 7.80 72.45 0.56 1.20 16 25 O -0.40 -10.27 10.50 -139.45 -1.46 -11.73 16 26 C 0.15 6.07 5.60 86.36 0.48 6.55 16 27 H 0.25 14.28 8.31 -92.71 -0.77 13.51 16 28 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 29 H 0.05 2.85 6.06 -2.39 -0.01 2.83 16 30 H 0.07 2.25 8.14 -2.38 -0.02 2.23 16 31 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 32 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 33 H 0.08 2.04 8.14 -2.39 -0.02 2.03 16 34 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.06 1.84 8.14 -2.38 -0.02 1.83 16 36 H 0.41 8.80 7.70 -92.71 -0.71 8.09 16 37 H 0.14 1.64 8.14 -2.38 -0.02 1.62 16 38 H 0.12 1.72 8.14 -2.39 -0.02 1.70 16 39 H 0.10 0.85 8.14 -2.38 -0.02 0.83 16 40 H 0.09 0.86 8.06 -2.39 -0.02 0.84 16 41 H 0.10 0.72 8.14 -2.38 -0.02 0.70 16 42 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 43 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 44 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 45 H 0.06 2.21 7.14 -2.39 -0.02 2.20 16 46 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 Total: -1.00 -72.71 361.44 1.43 -71.28 By element: Atomic # 1 Polarization: 17.71 SS G_CDS: 0.23 Total: 17.95 kcal Atomic # 6 Polarization: 0.94 SS G_CDS: 4.85 Total: 5.80 kcal Atomic # 7 Polarization: -103.79 SS G_CDS: -4.32 Total: -108.11 kcal Atomic # 8 Polarization: -31.54 SS G_CDS: -1.36 Total: -32.91 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 46.00 kcal Total: -72.71 1.43 -71.28 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359425076.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.573 kcal (2) G-P(sol) polarization free energy of solvation -72.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds