Wall clock time and date at job start Tue Mar 31 2020 03:27:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86803 * 119.99998 * 2 1 4 4 H 1.48500 * 109.47275 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46974 * 300.00344 * 3 2 1 6 6 H 1.48498 * 109.47113 * 60.00185 * 3 2 1 7 7 C 1.37871 * 120.00312 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00376 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99709 * 359.97438 * 7 2 1 10 10 H 1.09004 * 109.53631 * 300.09568 * 9 7 2 11 11 C 1.53114 * 109.50447 * 60.19866 * 9 7 2 12 12 C 1.53120 * 109.16161 * 177.59739 * 11 9 7 13 13 C 1.53042 * 109.27679 * 302.34397 * 12 11 9 14 14 N 1.46846 * 109.52384 * 59.17688 * 13 12 11 15 15 C 1.46896 * 110.99998 * 174.15789 * 14 13 12 16 16 C 1.50695 * 109.47474 * 294.21414 * 15 14 13 17 17 O 1.21281 * 119.99718 * 0.02562 * 16 15 14 18 18 N 1.34780 * 120.00122 * 179.97438 * 16 15 14 19 19 C 1.46500 * 119.99815 * 179.97438 * 18 16 15 20 20 C 1.53169 * 109.54602 * 274.55549 * 19 18 16 21 21 C 1.53091 * 109.16477 * 183.15683 * 20 19 18 22 22 O 1.42901 * 109.41821 * 57.60689 * 21 20 19 23 23 C 1.42905 * 114.09612 * 298.84502 * 22 21 20 24 24 C 1.53093 * 109.41516 * 61.15599 * 23 22 21 25 25 C 1.46850 * 111.19870 * 298.26168 * 14 13 12 26 26 H 0.97003 * 120.00453 * 359.97438 * 1 2 3 27 27 H 1.08995 * 109.52025 * 297.50194 * 11 9 7 28 28 H 1.09002 * 109.52325 * 57.68970 * 11 9 7 29 29 H 1.08998 * 109.50493 * 62.28140 * 12 11 9 30 30 H 1.09005 * 109.50270 * 182.40711 * 12 11 9 31 31 H 1.08993 * 109.46230 * 179.19773 * 13 12 11 32 32 H 1.09010 * 109.46152 * 299.16467 * 13 12 11 33 33 H 1.09002 * 109.47122 * 54.21627 * 15 14 13 34 34 H 1.09004 * 109.47037 * 174.21412 * 15 14 13 35 35 H 0.97001 * 119.99773 * 359.97438 * 18 16 15 36 36 H 1.08992 * 109.54478 * 34.82720 * 19 18 16 37 37 H 1.09002 * 109.52534 * 303.06212 * 20 19 18 38 38 H 1.08999 * 109.52566 * 63.24913 * 20 19 18 39 39 H 1.08997 * 109.47751 * 297.62491 * 21 20 19 40 40 H 1.09000 * 109.48044 * 177.59126 * 21 20 19 41 41 H 1.08997 * 109.48110 * 301.17096 * 23 22 21 42 42 H 1.09000 * 109.47616 * 181.13683 * 23 22 21 43 43 H 1.08996 * 109.52015 * 182.48071 * 24 23 22 44 44 H 1.09005 * 109.52394 * 62.29640 * 24 23 22 45 45 H 1.08995 * 109.45831 * 301.71808 * 25 14 13 46 46 H 1.08998 * 109.45719 * 181.75658 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8902 2.3965 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 1 0.6229 -2.5574 0.8885 11 6 0.3737 -2.5829 -1.2526 12 6 -0.3420 -3.9364 -1.2752 13 6 0.6981 -5.0585 -1.2389 14 7 1.5112 -4.9348 -0.0224 15 6 2.4283 -6.0739 0.1160 16 6 1.6333 -7.3350 0.3363 17 8 0.4219 -7.2894 0.3739 18 7 2.2684 -8.5137 0.4906 19 6 1.4955 -9.7396 0.7053 20 6 1.1817 -9.8929 2.1967 21 6 0.4431 -11.2148 2.4216 22 8 1.2445 -12.2950 1.9389 23 6 1.5303 -12.2298 0.5402 24 6 2.3127 -10.9487 0.2398 25 6 2.2448 -3.6628 -0.0012 26 1 -0.4851 0.8400 0.0004 27 1 -0.3642 -1.7809 -1.2346 28 1 0.9971 -2.4856 -2.1414 29 1 -0.9950 -4.0173 -0.4063 30 1 -0.9351 -4.0193 -2.1860 31 1 0.1913 -6.0235 -1.2404 32 1 1.3422 -4.9852 -2.1153 33 1 3.0235 -6.1735 -0.7918 34 1 3.0887 -5.9074 0.9670 35 1 3.2372 -8.5503 0.4594 36 1 0.5656 -9.6882 0.1391 37 1 2.1111 -9.8935 2.7663 38 1 0.5535 -9.0644 2.5239 39 1 -0.5051 -11.1973 1.8842 40 1 0.2550 -11.3495 3.4867 41 1 0.5964 -12.2256 -0.0218 42 1 2.1254 -13.0957 0.2502 43 1 2.4933 -10.8753 -0.8326 44 1 3.2649 -10.9706 0.7698 45 1 2.8817 -3.5962 -0.8832 46 1 2.8615 -3.6143 0.8963 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397566475.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:27:15 Heat of formation + Delta-G solvation = -89.389837 kcal Electronic energy + Delta-G solvation = -24541.069229 eV Core-core repulsion = 21043.988166 eV Total energy + Delta-G solvation = -3497.081063 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.31173 -39.13343 -37.63395 -35.30756 -33.63189 -32.11110 -31.48733 -31.38992 -29.80449 -27.25439 -24.89430 -24.55058 -23.94671 -22.09288 -21.44638 -20.74767 -20.18033 -18.57793 -17.19558 -16.74259 -16.35411 -16.32498 -15.67590 -15.36068 -14.97321 -14.90026 -14.41804 -14.26862 -13.90088 -13.73597 -13.46916 -13.05118 -12.77244 -12.66841 -12.36966 -12.11898 -11.94184 -11.70092 -11.62461 -11.32259 -11.21594 -10.95121 -10.74335 -10.65168 -10.62392 -10.16928 -10.00926 -9.80017 -9.67283 -9.37959 -9.15623 -8.90784 -8.65199 -8.26792 -7.64609 -5.94567 -4.01157 2.76056 3.00277 3.31177 3.39184 3.42324 3.53722 4.30452 4.40700 4.48465 4.57804 4.60159 4.78680 4.86492 4.86738 5.10259 5.21476 5.32327 5.35384 5.36385 5.42004 5.47868 5.47992 5.64143 5.76929 5.86354 5.91838 5.92792 6.17228 6.32029 6.39340 6.42599 6.56669 6.79758 6.83061 6.85760 6.99186 7.28706 7.34884 7.49280 7.69662 7.77615 7.83100 8.12161 8.21643 8.34711 8.50549 9.03217 9.62975 11.11406 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.039524 B = 0.002694 C = 0.002662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.254461 B =10391.254384 C =10514.505576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.062 3.938 3 Si 0.890 3.110 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.514 4.514 8 H 0.054 0.946 9 C 0.055 3.945 10 H 0.035 0.965 11 C -0.111 4.111 12 C -0.114 4.114 13 C 0.060 3.940 14 N -0.521 5.521 15 C 0.036 3.964 16 C 0.515 3.485 17 O -0.514 6.514 18 N -0.736 5.736 19 C 0.146 3.854 20 C -0.167 4.167 21 C 0.063 3.937 22 O -0.384 6.384 23 C 0.065 3.935 24 C -0.163 4.163 25 C 0.068 3.932 26 H 0.259 0.741 27 H 0.090 0.910 28 H 0.029 0.971 29 H 0.062 0.938 30 H 0.044 0.956 31 H 0.075 0.925 32 H 0.015 0.985 33 H 0.054 0.946 34 H 0.099 0.901 35 H 0.398 0.602 36 H 0.088 0.912 37 H 0.073 0.927 38 H 0.082 0.918 39 H 0.054 0.946 40 H 0.097 0.903 41 H 0.053 0.947 42 H 0.097 0.903 43 H 0.080 0.920 44 H 0.077 0.923 45 H 0.020 0.980 46 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.998 -22.740 0.085 23.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.139 4.139 3 Si 0.718 3.282 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.553 4.553 8 H 0.072 0.928 9 C 0.036 3.964 10 H 0.053 0.947 11 C -0.149 4.149 12 C -0.152 4.152 13 C -0.068 4.068 14 N -0.246 5.246 15 C -0.096 4.096 16 C 0.301 3.699 17 O -0.387 6.387 18 N -0.389 5.389 19 C 0.041 3.959 20 C -0.206 4.206 21 C -0.014 4.014 22 O -0.303 6.303 23 C -0.013 4.013 24 C -0.202 4.202 25 C -0.058 4.058 26 H 0.069 0.931 27 H 0.108 0.892 28 H 0.047 0.953 29 H 0.080 0.920 30 H 0.063 0.937 31 H 0.093 0.907 32 H 0.034 0.966 33 H 0.072 0.928 34 H 0.117 0.883 35 H 0.232 0.768 36 H 0.106 0.894 37 H 0.091 0.909 38 H 0.101 0.899 39 H 0.072 0.928 40 H 0.115 0.885 41 H 0.072 0.928 42 H 0.115 0.885 43 H 0.098 0.902 44 H 0.096 0.904 45 H 0.038 0.962 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 3.690 -22.695 0.619 23.002 hybrid contribution 1.524 1.201 -0.904 2.141 sum 5.215 -21.494 -0.285 22.119 Atomic orbital electron populations 1.69909 1.05839 1.26192 1.50635 1.24939 0.94820 0.98948 0.95183 0.86576 0.80074 0.84017 0.77527 1.19892 1.21124 1.21054 1.21172 0.92802 0.90641 1.50691 0.92805 1.18662 0.92597 0.90049 0.95046 0.94652 1.21663 1.00006 0.94928 0.98303 1.21629 0.97251 0.96103 1.00223 1.22179 0.95525 1.00333 0.88752 1.61735 1.22841 1.00836 1.39153 1.21943 0.95018 0.90435 1.02163 1.20874 0.88892 0.84512 0.75610 1.90679 1.14091 1.85910 1.48070 1.46115 1.10144 1.06943 1.75721 1.20875 0.95793 0.83423 0.95814 1.22618 1.02240 0.98860 0.96892 1.22586 0.93030 0.85512 1.00266 1.87937 1.71975 1.46714 1.23647 1.22526 0.98956 0.97265 0.82525 1.22501 1.00214 0.94947 1.02494 1.22367 0.96520 0.88220 0.98713 0.93107 0.89155 0.95262 0.91961 0.93682 0.90679 0.96644 0.92777 0.88281 0.76819 0.89401 0.90851 0.89902 0.92799 0.88503 0.92829 0.88467 0.90183 0.90426 0.96204 0.92217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.66 11.36 55.43 0.63 -25.03 16 2 C 0.06 1.74 5.30 -17.83 -0.09 1.64 16 3 Si 0.89 21.33 29.54 -169.99 -5.02 16.30 16 4 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 7 C -0.51 -14.16 8.56 -34.44 -0.29 -14.46 16 8 H 0.05 1.45 7.74 -52.49 -0.41 1.05 16 9 C 0.06 1.41 2.26 -91.69 -0.21 1.20 16 10 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 11 C -0.11 -2.71 5.03 -26.61 -0.13 -2.85 16 12 C -0.11 -2.42 6.09 -26.65 -0.16 -2.59 16 13 C 0.06 1.15 5.11 -3.83 -0.02 1.13 16 14 N -0.52 -10.04 4.40 -236.12 -1.04 -11.08 16 15 C 0.04 0.52 5.45 -4.98 -0.03 0.50 16 16 C 0.51 7.31 7.48 -10.99 -0.08 7.23 16 17 O -0.51 -9.37 13.99 5.56 0.08 -9.30 16 18 N -0.74 -7.35 5.08 -53.63 -0.27 -7.62 16 19 C 0.15 1.38 2.54 -67.75 -0.17 1.20 16 20 C -0.17 -1.59 5.72 -26.60 -0.15 -1.74 16 21 C 0.06 0.54 6.84 37.20 0.25 0.79 16 22 O -0.38 -3.56 10.77 -35.23 -0.38 -3.93 16 23 C 0.06 0.45 6.84 37.21 0.25 0.70 16 24 C -0.16 -1.11 5.61 -26.59 -0.15 -1.26 16 25 C 0.07 1.45 4.68 -3.83 -0.02 1.44 16 26 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 27 H 0.09 2.46 6.16 -51.93 -0.32 2.14 16 28 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 29 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 30 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.07 1.44 5.78 -51.93 -0.30 1.14 16 32 H 0.02 0.29 8.14 -51.92 -0.42 -0.13 16 33 H 0.05 0.69 8.12 -51.93 -0.42 0.27 16 34 H 0.10 1.26 7.99 -51.93 -0.41 0.85 16 35 H 0.40 2.85 8.61 -40.82 -0.35 2.50 16 36 H 0.09 1.00 7.57 -51.93 -0.39 0.60 16 37 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 42 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 46 H 0.06 1.22 8.02 -51.93 -0.42 0.81 16 LS Contribution 356.26 15.07 5.37 5.37 Total: -1.00 -31.95 356.26 -9.72 -41.67 By element: Atomic # 1 Polarization: 8.74 SS G_CDS: -8.08 Total: 0.67 kcal Atomic # 6 Polarization: -6.04 SS G_CDS: -1.00 Total: -7.05 kcal Atomic # 7 Polarization: -43.05 SS G_CDS: -0.68 Total: -43.73 kcal Atomic # 8 Polarization: -12.93 SS G_CDS: -0.30 Total: -13.23 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -31.95 -9.72 -41.67 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397566475.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.722 kcal (2) G-P(sol) polarization free energy of solvation -31.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds