Wall clock time and date at job start Tue Mar 31 2020 03:27:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86803 * 119.99998 * 2 1 4 4 H 1.48500 * 109.47275 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46974 * 300.00344 * 3 2 1 6 6 H 1.48498 * 109.47113 * 60.00185 * 3 2 1 7 7 C 1.37871 * 120.00312 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00376 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99709 * 359.97438 * 7 2 1 10 10 H 1.09004 * 109.53631 * 300.09568 * 9 7 2 11 11 C 1.53114 * 109.50447 * 60.19866 * 9 7 2 12 12 C 1.53120 * 109.16161 * 177.59739 * 11 9 7 13 13 C 1.53042 * 109.27679 * 302.34397 * 12 11 9 14 14 N 1.46846 * 109.52384 * 59.17688 * 13 12 11 15 15 C 1.46896 * 110.99998 * 174.15789 * 14 13 12 16 16 C 1.50695 * 109.47474 * 294.21414 * 15 14 13 17 17 O 1.21281 * 119.99718 * 0.02562 * 16 15 14 18 18 N 1.34780 * 120.00122 * 179.97438 * 16 15 14 19 19 C 1.46500 * 119.99815 * 179.97438 * 18 16 15 20 20 C 1.53169 * 109.54602 * 274.55549 * 19 18 16 21 21 C 1.53091 * 109.16477 * 183.15683 * 20 19 18 22 22 O 1.42901 * 109.41821 * 57.60689 * 21 20 19 23 23 C 1.42905 * 114.09612 * 298.84502 * 22 21 20 24 24 C 1.53093 * 109.41516 * 61.15599 * 23 22 21 25 25 C 1.46850 * 111.19870 * 298.26168 * 14 13 12 26 26 H 0.97003 * 120.00453 * 359.97438 * 1 2 3 27 27 H 1.08995 * 109.52025 * 297.50194 * 11 9 7 28 28 H 1.09002 * 109.52325 * 57.68970 * 11 9 7 29 29 H 1.08998 * 109.50493 * 62.28140 * 12 11 9 30 30 H 1.09005 * 109.50270 * 182.40711 * 12 11 9 31 31 H 1.08993 * 109.46230 * 179.19773 * 13 12 11 32 32 H 1.09010 * 109.46152 * 299.16467 * 13 12 11 33 33 H 1.09002 * 109.47122 * 54.21627 * 15 14 13 34 34 H 1.09004 * 109.47037 * 174.21412 * 15 14 13 35 35 H 0.97001 * 119.99773 * 359.97438 * 18 16 15 36 36 H 1.08992 * 109.54478 * 34.82720 * 19 18 16 37 37 H 1.09002 * 109.52534 * 303.06212 * 20 19 18 38 38 H 1.08999 * 109.52566 * 63.24913 * 20 19 18 39 39 H 1.08997 * 109.47751 * 297.62491 * 21 20 19 40 40 H 1.09000 * 109.48044 * 177.59126 * 21 20 19 41 41 H 1.08997 * 109.48110 * 301.17096 * 23 22 21 42 42 H 1.09000 * 109.47616 * 181.13683 * 23 22 21 43 43 H 1.08996 * 109.52015 * 182.48071 * 24 23 22 44 44 H 1.09005 * 109.52394 * 62.29640 * 24 23 22 45 45 H 1.08995 * 109.45831 * 301.71808 * 25 14 13 46 46 H 1.08998 * 109.45719 * 181.75658 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8902 2.3965 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 1 0.6229 -2.5574 0.8885 11 6 0.3737 -2.5829 -1.2526 12 6 -0.3420 -3.9364 -1.2752 13 6 0.6981 -5.0585 -1.2389 14 7 1.5112 -4.9348 -0.0224 15 6 2.4283 -6.0739 0.1160 16 6 1.6333 -7.3350 0.3363 17 8 0.4219 -7.2894 0.3739 18 7 2.2684 -8.5137 0.4906 19 6 1.4955 -9.7396 0.7053 20 6 1.1817 -9.8929 2.1967 21 6 0.4431 -11.2148 2.4216 22 8 1.2445 -12.2950 1.9389 23 6 1.5303 -12.2298 0.5402 24 6 2.3127 -10.9487 0.2398 25 6 2.2448 -3.6628 -0.0012 26 1 -0.4851 0.8400 0.0004 27 1 -0.3642 -1.7809 -1.2346 28 1 0.9971 -2.4856 -2.1414 29 1 -0.9950 -4.0173 -0.4063 30 1 -0.9351 -4.0193 -2.1860 31 1 0.1913 -6.0235 -1.2404 32 1 1.3422 -4.9852 -2.1153 33 1 3.0235 -6.1735 -0.7918 34 1 3.0887 -5.9074 0.9670 35 1 3.2372 -8.5503 0.4594 36 1 0.5656 -9.6882 0.1391 37 1 2.1111 -9.8935 2.7663 38 1 0.5535 -9.0644 2.5239 39 1 -0.5051 -11.1973 1.8842 40 1 0.2550 -11.3495 3.4867 41 1 0.5964 -12.2256 -0.0218 42 1 2.1254 -13.0957 0.2502 43 1 2.4933 -10.8753 -0.8326 44 1 3.2649 -10.9706 0.7698 45 1 2.8817 -3.5962 -0.8832 46 1 2.8615 -3.6143 0.8963 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397566475.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:27:14 Heat of formation + Delta-G solvation = -112.142869 kcal Electronic energy + Delta-G solvation = -24542.055874 eV Core-core repulsion = 21043.988166 eV Total energy + Delta-G solvation = -3498.067708 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.28340 -40.12396 -39.08872 -36.25488 -35.45540 -33.63971 -32.56093 -32.08965 -31.66769 -28.53641 -26.90440 -25.43220 -24.59366 -23.63946 -23.22077 -21.53688 -21.21401 -20.38345 -18.48248 -18.03333 -17.69404 -16.99954 -16.81427 -16.51338 -16.32369 -16.11035 -15.70613 -15.47401 -15.09798 -14.83657 -14.66757 -14.53657 -14.31314 -14.08422 -13.80642 -13.37659 -13.28737 -12.86785 -12.78649 -12.63173 -12.47508 -12.43970 -12.31951 -11.96286 -11.77357 -11.73915 -11.48498 -11.40940 -11.11600 -10.80808 -10.65690 -10.49950 -10.31726 -10.04834 -9.11382 -8.06456 -6.21310 1.41850 1.43132 1.54697 1.67012 2.05561 2.44498 2.93694 3.14696 3.20733 3.65332 3.79317 3.87071 3.99563 4.09759 4.17252 4.23869 4.26109 4.31706 4.41151 4.45965 4.51590 4.56456 4.62931 4.71454 4.75434 4.78257 4.84181 4.87661 4.96188 5.04098 5.06962 5.11670 5.18204 5.19802 5.37972 5.50658 5.52898 5.64751 5.95236 6.11027 6.20717 6.21404 6.22668 6.45479 6.63497 6.92435 7.33328 7.46982 8.98772 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.039524 B = 0.002694 C = 0.002662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.254461 B =10391.254384 C =10514.505576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.010 3.990 3 Si 0.957 3.043 4 H -0.263 1.263 5 H -0.282 1.282 6 H -0.283 1.283 7 C -0.531 4.531 8 H 0.058 0.942 9 C 0.051 3.949 10 H -0.009 1.009 11 C -0.102 4.102 12 C -0.109 4.109 13 C 0.069 3.931 14 N -0.542 5.542 15 C 0.035 3.965 16 C 0.516 3.484 17 O -0.562 6.562 18 N -0.715 5.715 19 C 0.143 3.857 20 C -0.162 4.162 21 C 0.065 3.935 22 O -0.398 6.398 23 C 0.058 3.942 24 C -0.152 4.152 25 C 0.083 3.917 26 H 0.259 0.741 27 H 0.056 0.944 28 H 0.028 0.972 29 H 0.039 0.961 30 H 0.064 0.936 31 H 0.080 0.920 32 H 0.028 0.972 33 H 0.083 0.917 34 H 0.120 0.880 35 H 0.416 0.584 36 H 0.067 0.933 37 H 0.079 0.921 38 H 0.057 0.943 39 H 0.052 0.948 40 H 0.106 0.894 41 H 0.055 0.945 42 H 0.118 0.882 43 H 0.094 0.906 44 H 0.089 0.911 45 H 0.027 0.973 46 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.430 -24.308 -0.534 25.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.189 4.189 3 Si 0.783 3.217 4 H -0.187 1.187 5 H -0.208 1.208 6 H -0.209 1.209 7 C -0.570 4.570 8 H 0.076 0.924 9 C 0.032 3.968 10 H 0.009 0.991 11 C -0.141 4.141 12 C -0.146 4.146 13 C -0.058 4.058 14 N -0.267 5.267 15 C -0.096 4.096 16 C 0.303 3.697 17 O -0.439 6.439 18 N -0.368 5.368 19 C 0.038 3.962 20 C -0.201 4.201 21 C -0.012 4.012 22 O -0.317 6.317 23 C -0.019 4.019 24 C -0.190 4.190 25 C -0.044 4.044 26 H 0.068 0.932 27 H 0.074 0.926 28 H 0.047 0.953 29 H 0.058 0.942 30 H 0.083 0.917 31 H 0.098 0.902 32 H 0.046 0.954 33 H 0.100 0.900 34 H 0.138 0.862 35 H 0.253 0.747 36 H 0.085 0.915 37 H 0.098 0.902 38 H 0.076 0.924 39 H 0.070 0.930 40 H 0.124 0.876 41 H 0.073 0.927 42 H 0.136 0.864 43 H 0.112 0.888 44 H 0.107 0.893 45 H 0.045 0.955 46 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 6.178 -24.309 0.002 25.082 hybrid contribution 0.751 1.623 -0.686 1.915 sum 6.930 -22.686 -0.684 23.731 Atomic orbital electron populations 1.70070 1.07399 1.26981 1.51399 1.25785 0.95630 1.02583 0.94858 0.85517 0.79207 0.79544 0.77426 1.18707 1.20775 1.20868 1.21548 0.93163 0.91816 1.50479 0.92396 1.18595 0.93064 0.91678 0.93444 0.99080 1.21466 0.99160 0.95687 0.97750 1.21540 0.97626 0.95282 1.00200 1.22042 0.95142 0.99248 0.89383 1.61556 1.24200 1.01573 1.39391 1.22049 0.94509 0.88646 1.04346 1.20844 0.88201 0.85448 0.75215 1.90671 1.16030 1.86619 1.50614 1.45912 1.11089 1.05969 1.73827 1.20958 0.95574 0.84093 0.95553 1.22542 1.02092 0.98529 0.96966 1.22578 0.92774 0.84924 1.00933 1.87922 1.72007 1.46748 1.24996 1.22738 0.99516 0.98144 0.81458 1.22443 0.99970 0.93185 1.03429 1.22027 0.95216 0.87819 0.99305 0.93158 0.92562 0.95339 0.94189 0.91713 0.90205 0.95354 0.89975 0.86225 0.74722 0.91507 0.90249 0.92436 0.92958 0.87593 0.92682 0.86358 0.88752 0.89272 0.95528 0.91540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.77 11.36 21.44 0.24 -54.53 16 2 C 0.01 0.55 5.30 84.65 0.45 1.00 16 3 Si 0.96 43.97 29.54 68.60 2.03 46.00 16 4 H -0.26 -11.50 7.11 99.48 0.71 -10.80 16 5 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 6 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 7 C -0.53 -29.58 8.56 25.60 0.22 -29.36 16 8 H 0.06 3.10 7.74 -2.91 -0.02 3.07 16 9 C 0.05 2.67 2.26 -11.49 -0.03 2.64 16 10 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 11 C -0.10 -5.14 5.03 30.67 0.15 -4.99 16 12 C -0.11 -4.67 6.09 30.65 0.19 -4.49 16 13 C 0.07 2.61 5.11 86.33 0.44 3.05 16 14 N -0.54 -20.37 4.40 -900.94 -3.96 -24.33 16 15 C 0.04 0.93 5.45 85.56 0.47 1.40 16 16 C 0.52 13.85 7.48 87.65 0.66 14.50 16 17 O -0.56 -20.42 13.99 -3.03 -0.04 -20.46 16 18 N -0.71 -12.63 5.08 -441.99 -2.25 -14.88 16 19 C 0.14 2.48 2.54 45.11 0.11 2.59 16 20 C -0.16 -2.95 5.72 30.68 0.18 -2.77 16 21 C 0.07 1.05 6.84 72.01 0.49 1.54 16 22 O -0.40 -6.64 10.77 -148.98 -1.60 -8.24 16 23 C 0.06 0.67 6.84 72.01 0.49 1.16 16 24 C -0.15 -1.63 5.61 30.69 0.17 -1.45 16 25 C 0.08 3.48 4.68 86.32 0.40 3.89 16 26 H 0.26 14.66 8.31 -92.71 -0.77 13.89 16 27 H 0.06 3.19 6.16 -2.39 -0.01 3.18 16 28 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 29 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 30 H 0.06 2.48 8.14 -2.38 -0.02 2.46 16 31 H 0.08 2.99 5.78 -2.39 -0.01 2.97 16 32 H 0.03 1.00 8.14 -2.38 -0.02 0.98 16 33 H 0.08 1.77 8.12 -2.39 -0.02 1.75 16 34 H 0.12 2.67 7.99 -2.39 -0.02 2.65 16 35 H 0.42 4.50 8.61 -92.71 -0.80 3.70 16 36 H 0.07 1.48 7.57 -2.39 -0.02 1.47 16 37 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 39 H 0.05 0.84 8.14 -2.39 -0.02 0.83 16 40 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 41 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 42 H 0.12 0.87 8.14 -2.39 -0.02 0.85 16 43 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 44 H 0.09 0.79 8.14 -2.38 -0.02 0.78 16 45 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 46 H 0.07 2.65 8.02 -2.39 -0.02 2.63 16 Total: -1.00 -71.26 356.26 -1.03 -72.30 By element: Atomic # 1 Polarization: 15.27 SS G_CDS: 0.15 Total: 15.43 kcal Atomic # 6 Polarization: -15.68 SS G_CDS: 4.40 Total: -11.28 kcal Atomic # 7 Polarization: -87.77 SS G_CDS: -5.96 Total: -93.74 kcal Atomic # 8 Polarization: -27.06 SS G_CDS: -1.65 Total: -28.70 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 46.00 kcal Total: -71.26 -1.03 -72.30 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397566475.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.846 kcal (2) G-P(sol) polarization free energy of solvation -71.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds