Wall clock time and date at job start Tue Mar 31 2020 03:07:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42901 * 113.99779 * 2 1 4 4 C 1.53001 * 109.47140 * 180.02562 * 3 2 1 5 5 H 1.09003 * 109.47043 * 55.00299 * 4 3 2 6 6 C 1.52996 * 109.47280 * 295.00154 * 4 3 2 7 7 N 1.46502 * 109.46837 * 175.00009 * 4 3 2 8 8 C 1.36446 * 125.85412 * 35.00695 * 7 4 3 9 9 C 1.34966 * 108.95007 * 179.71897 * 8 7 4 10 10 C 1.41205 * 108.23905 * 0.43954 * 9 8 7 11 11 N 1.32934 * 126.37801 * 179.83217 * 10 9 8 12 12 C 1.33828 * 119.99917 * 359.67770 * 11 10 9 13 13 O 1.21844 * 120.00064 * 0.02562 * 12 11 10 14 14 N 1.34784 * 120.00123 * 180.02562 * 12 11 10 15 15 C 1.46493 * 119.99864 * 179.72985 * 14 12 11 16 16 C 1.53001 * 109.47084 * 180.02562 * 15 14 12 17 17 C 1.50702 * 109.47325 * 180.02562 * 16 15 14 18 18 H 1.08004 * 119.99792 * 359.97438 * 17 16 15 19 19 C 1.37875 * 120.00025 * 179.97438 * 17 16 15 20 20 N 1.31515 * 120.00107 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 120.00009 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47407 * 90.00193 * 21 19 17 23 23 H 1.48510 * 109.47215 * 210.00304 * 21 19 17 24 24 H 1.48501 * 109.47274 * 330.00047 * 21 19 17 25 25 N 1.37420 * 107.24464 * 359.55964 * 10 9 8 26 26 H 0.96998 * 126.36692 * 180.29999 * 25 10 9 27 27 H 1.09000 * 109.47166 * 299.99580 * 1 2 3 28 28 H 1.09001 * 109.47457 * 59.99722 * 1 2 3 29 29 H 1.09002 * 109.47127 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47169 * 60.00095 * 3 2 1 31 31 H 1.09006 * 109.47417 * 300.00300 * 3 2 1 32 32 H 1.09003 * 109.47201 * 300.00048 * 6 4 3 33 33 H 1.09004 * 109.47281 * 59.99662 * 6 4 3 34 34 H 1.08998 * 109.46946 * 179.97438 * 6 4 3 35 35 H 1.07994 * 125.52906 * 0.02562 * 8 7 4 36 36 H 1.07994 * 125.88396 * 180.29338 * 9 8 7 37 37 H 0.97000 * 119.99339 * 0.02562 * 14 12 11 38 38 H 1.09007 * 109.47196 * 299.99538 * 15 14 12 39 39 H 1.09006 * 109.47678 * 59.99732 * 15 14 12 40 40 H 1.09007 * 109.46593 * 299.99743 * 16 15 14 41 41 H 1.08993 * 109.47372 * 59.99485 * 16 15 14 42 42 H 0.97000 * 120.00440 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 1 3.8507 0.5686 -0.8428 6 6 3.9962 0.5365 1.3063 7 7 4.1307 2.5179 -0.1210 8 6 3.6324 3.6675 0.4194 9 6 4.4525 4.6918 0.1034 10 6 5.5132 4.1838 -0.6780 11 7 6.5236 4.8828 -1.1856 12 6 6.5963 6.2025 -0.9759 13 8 5.7367 6.7633 -0.3193 14 7 7.6205 6.9114 -1.4909 15 6 7.6968 8.3570 -1.2663 16 6 8.9453 8.9145 -1.9528 17 6 9.0243 10.4015 -1.7212 18 1 8.2601 10.8992 -1.1426 19 6 10.0720 11.1266 -2.2480 20 7 11.0027 10.5205 -2.9522 21 14 10.1694 12.9699 -1.9615 22 1 10.9352 13.2378 -0.7177 23 1 10.8527 13.6143 -3.1120 24 1 8.7979 13.5232 -1.8272 25 7 5.3098 2.8312 -0.8110 26 1 5.8771 2.2089 -1.2924 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.6885 1.8464 0.8900 31 1 1.6885 1.8465 -0.8900 32 1 3.6809 1.1526 2.1484 33 1 3.5533 -0.4554 1.3959 34 1 5.0828 0.4501 1.3056 35 1 2.7309 3.7444 1.0090 36 1 4.3191 5.7228 0.3957 37 1 8.3046 6.4649 -2.0140 38 1 6.8100 8.8365 -1.6808 39 1 7.7508 8.5561 -0.1959 40 1 9.8323 8.4351 -1.5387 41 1 8.8910 8.7155 -3.0230 42 1 11.7397 11.0306 -3.3232 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000432966562.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:07:36 Heat of formation + Delta-G solvation = 32.719684 kcal Electronic energy + Delta-G solvation = -22807.115178 eV Core-core repulsion = 19211.788838 eV Total energy + Delta-G solvation = -3595.326340 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 296.164 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.59095 -39.07584 -38.60233 -35.66215 -34.50852 -32.83105 -32.59061 -31.69983 -29.64641 -28.52647 -28.13195 -26.19768 -24.67353 -23.08220 -22.17381 -21.51081 -20.58388 -19.64504 -18.18213 -16.99044 -16.83249 -16.38887 -16.22639 -16.03658 -15.43729 -15.33040 -15.03808 -14.61176 -14.37703 -14.12544 -13.90720 -13.48843 -13.34294 -13.04594 -12.89037 -12.65678 -12.29252 -12.17126 -12.14442 -11.69561 -11.00568 -10.93659 -10.65093 -10.51575 -10.46117 -10.09724 -9.96628 -9.66817 -9.41110 -9.14733 -8.56603 -8.34009 -8.08364 -7.34261 -5.95535 -3.97485 1.02168 1.12854 2.69122 2.98424 3.33005 3.38483 3.43831 3.48767 3.92279 4.08228 4.23542 4.28899 4.40435 4.55290 4.58748 4.59531 4.67234 4.75971 4.81391 5.03014 5.04755 5.11787 5.30986 5.40967 5.44753 5.53525 5.85276 6.11210 6.30221 6.59244 6.62826 6.70811 6.98804 7.00952 7.28089 7.46258 7.74562 7.84009 8.03545 8.06249 8.43693 8.66277 9.08470 9.60390 9.66157 11.16252 Molecular weight = 296.16amu Principal moments of inertia in cm(-1) A = 0.054083 B = 0.002041 C = 0.002007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 517.601269 B =13713.207546 C =13951.153936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.385 6.385 3 C 0.054 3.946 4 C 0.168 3.832 5 H 0.106 0.894 6 C -0.166 4.166 7 N -0.395 5.395 8 C 0.128 3.872 9 C -0.283 4.283 10 C 0.493 3.507 11 N -0.675 5.675 12 C 0.678 3.322 13 O -0.627 6.627 14 N -0.712 5.712 15 C 0.138 3.862 16 C 0.012 3.988 17 C -0.517 4.517 18 H 0.059 0.941 19 C 0.057 3.943 20 N -0.895 5.895 21 Si 0.896 3.104 22 H -0.280 1.280 23 H -0.287 1.287 24 H -0.273 1.273 25 N -0.486 5.486 26 H 0.446 0.554 27 H 0.046 0.954 28 H 0.046 0.954 29 H 0.092 0.908 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.066 0.934 33 H 0.085 0.915 34 H 0.065 0.935 35 H 0.186 0.814 36 H 0.193 0.807 37 H 0.398 0.602 38 H 0.051 0.949 39 H 0.051 0.949 40 H 0.022 0.978 41 H 0.022 0.978 42 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.701 -26.846 7.320 35.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.303 6.303 3 C -0.024 4.024 4 C 0.066 3.934 5 H 0.124 0.876 6 C -0.224 4.224 7 N -0.189 5.189 8 C -0.006 4.006 9 C -0.315 4.315 10 C 0.232 3.768 11 N -0.432 5.432 12 C 0.377 3.623 13 O -0.509 6.509 14 N -0.362 5.362 15 C 0.015 3.985 16 C -0.026 4.026 17 C -0.556 4.556 18 H 0.077 0.923 19 C -0.144 4.144 20 N -0.534 5.534 21 Si 0.724 3.276 22 H -0.206 1.206 23 H -0.213 1.213 24 H -0.198 1.198 25 N -0.215 5.215 26 H 0.293 0.707 27 H 0.065 0.935 28 H 0.064 0.936 29 H 0.110 0.890 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.085 0.915 33 H 0.104 0.896 34 H 0.084 0.916 35 H 0.203 0.797 36 H 0.210 0.790 37 H 0.231 0.769 38 H 0.069 0.931 39 H 0.070 0.930 40 H 0.041 0.959 41 H 0.041 0.959 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -21.382 -27.015 7.178 35.193 hybrid contribution 0.105 1.006 -0.068 1.014 sum -21.278 -26.009 7.109 34.347 Atomic orbital electron populations 1.22826 0.79627 1.03392 1.00569 1.87809 1.20709 1.26215 1.95576 1.22693 0.91534 0.86056 1.02133 1.21026 0.91826 0.79341 1.01192 0.87648 1.22301 1.02447 1.01881 0.95806 1.46312 1.16139 1.07356 1.49132 1.22638 0.98573 0.83954 0.95405 1.22824 0.97476 1.02330 1.08870 1.18756 0.89559 0.81873 0.86579 1.68195 1.26974 1.09113 1.38962 1.16671 0.82152 0.83888 0.79572 1.90698 1.41162 1.74098 1.44956 1.45215 1.26028 1.09408 1.55561 1.21546 1.00514 0.76365 1.00072 1.19330 0.91298 0.95944 0.96017 1.21088 1.08773 0.92507 1.33235 0.92271 1.25004 0.95626 0.98685 0.95121 1.69971 1.12355 1.35868 1.35206 0.86521 0.78208 0.85206 0.77637 1.20650 1.21269 1.19779 1.44051 1.17758 1.07599 1.52046 0.70659 0.93529 0.93571 0.89001 0.91733 0.91733 0.91473 0.89577 0.91568 0.79687 0.79040 0.76871 0.93090 0.93045 0.95938 0.95939 0.92990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.09 11.01 101.05 1.11 1.20 16 2 O -0.39 -1.83 10.24 -35.23 -0.36 -2.19 16 3 C 0.05 0.20 4.85 37.16 0.18 0.38 16 4 C 0.17 0.75 3.63 -67.93 -0.25 0.51 16 5 H 0.11 0.41 8.14 -51.93 -0.42 -0.01 16 6 C -0.17 -0.68 9.41 37.16 0.35 -0.33 16 7 N -0.39 -2.88 3.56 -54.57 -0.19 -3.07 16 8 C 0.13 1.05 10.57 -16.66 -0.18 0.87 16 9 C -0.28 -3.84 9.52 -39.62 -0.38 -4.21 16 10 C 0.49 7.41 8.07 -155.29 -1.25 6.15 16 11 N -0.68 -12.74 10.59 -15.79 -0.17 -12.90 16 12 C 0.68 14.99 8.47 -87.76 -0.74 14.25 16 13 O -0.63 -14.81 13.26 5.06 0.07 -14.75 16 14 N -0.71 -15.83 5.56 -65.42 -0.36 -16.20 16 15 C 0.14 3.38 5.61 -4.04 -0.02 3.36 16 16 C 0.01 0.32 5.09 -27.88 -0.14 0.18 16 17 C -0.52 -15.25 9.11 -34.44 -0.31 -15.57 16 18 H 0.06 1.70 7.74 -52.48 -0.41 1.30 16 19 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 20 N -0.89 -27.43 13.29 55.43 0.74 -26.69 16 21 Si 0.90 22.31 29.54 -169.99 -5.02 17.29 16 22 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 23 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 24 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 25 N -0.49 -4.81 7.38 31.33 0.23 -4.58 16 26 H 0.45 3.36 8.96 -182.55 -1.64 1.73 16 27 H 0.05 0.08 8.14 -51.93 -0.42 -0.34 16 28 H 0.05 0.10 8.14 -51.93 -0.42 -0.32 16 29 H 0.09 0.16 8.14 -51.93 -0.42 -0.27 16 30 H 0.06 0.16 7.40 -51.93 -0.38 -0.23 16 31 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.07 0.28 8.14 -51.93 -0.42 -0.15 16 33 H 0.09 0.31 7.82 -51.93 -0.41 -0.10 16 34 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 35 H 0.19 0.72 7.37 -52.49 -0.39 0.33 16 36 H 0.19 3.15 5.77 -52.49 -0.30 2.84 16 37 H 0.40 8.26 8.57 -40.82 -0.35 7.91 16 38 H 0.05 1.27 8.14 -51.93 -0.42 0.85 16 39 H 0.05 1.29 8.14 -51.93 -0.42 0.86 16 40 H 0.02 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.02 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 357.06 15.07 5.38 5.38 Total: -1.00 -37.89 357.06 -9.08 -46.97 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: -7.66 Total: 2.39 kcal Atomic # 6 Polarization: 10.09 SS G_CDS: -1.73 Total: 8.36 kcal Atomic # 7 Polarization: -63.69 SS G_CDS: 0.24 Total: -63.45 kcal Atomic # 8 Polarization: -16.65 SS G_CDS: -0.29 Total: -16.94 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -37.89 -9.08 -46.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000432966562.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.692 kcal (2) G-P(sol) polarization free energy of solvation -37.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.972 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds