Wall clock time and date at job start Tue Mar 31 2020 03:07:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42901 * 113.99779 * 2 1 4 4 C 1.53001 * 109.47140 * 180.02562 * 3 2 1 5 5 H 1.09003 * 109.47043 * 55.00299 * 4 3 2 6 6 C 1.52996 * 109.47280 * 295.00154 * 4 3 2 7 7 N 1.46502 * 109.46837 * 175.00009 * 4 3 2 8 8 C 1.36446 * 125.85412 * 35.00695 * 7 4 3 9 9 C 1.34966 * 108.95007 * 179.71897 * 8 7 4 10 10 C 1.41205 * 108.23905 * 0.43954 * 9 8 7 11 11 N 1.32934 * 126.37801 * 179.83217 * 10 9 8 12 12 C 1.33828 * 119.99917 * 359.67770 * 11 10 9 13 13 O 1.21844 * 120.00064 * 0.02562 * 12 11 10 14 14 N 1.34784 * 120.00123 * 180.02562 * 12 11 10 15 15 C 1.46493 * 119.99864 * 179.72985 * 14 12 11 16 16 C 1.53001 * 109.47084 * 180.02562 * 15 14 12 17 17 C 1.50702 * 109.47325 * 180.02562 * 16 15 14 18 18 H 1.08004 * 119.99792 * 359.97438 * 17 16 15 19 19 C 1.37875 * 120.00025 * 179.97438 * 17 16 15 20 20 N 1.31515 * 120.00107 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 120.00009 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47407 * 90.00193 * 21 19 17 23 23 H 1.48510 * 109.47215 * 210.00304 * 21 19 17 24 24 H 1.48501 * 109.47274 * 330.00047 * 21 19 17 25 25 N 1.37420 * 107.24464 * 359.55964 * 10 9 8 26 26 H 0.96998 * 126.36692 * 180.29999 * 25 10 9 27 27 H 1.09000 * 109.47166 * 299.99580 * 1 2 3 28 28 H 1.09001 * 109.47457 * 59.99722 * 1 2 3 29 29 H 1.09002 * 109.47127 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47169 * 60.00095 * 3 2 1 31 31 H 1.09006 * 109.47417 * 300.00300 * 3 2 1 32 32 H 1.09003 * 109.47201 * 300.00048 * 6 4 3 33 33 H 1.09004 * 109.47281 * 59.99662 * 6 4 3 34 34 H 1.08998 * 109.46946 * 179.97438 * 6 4 3 35 35 H 1.07994 * 125.52906 * 0.02562 * 8 7 4 36 36 H 1.07994 * 125.88396 * 180.29338 * 9 8 7 37 37 H 0.97000 * 119.99339 * 0.02562 * 14 12 11 38 38 H 1.09007 * 109.47196 * 299.99538 * 15 14 12 39 39 H 1.09006 * 109.47678 * 59.99732 * 15 14 12 40 40 H 1.09007 * 109.46593 * 299.99743 * 16 15 14 41 41 H 1.08993 * 109.47372 * 59.99485 * 16 15 14 42 42 H 0.97000 * 120.00440 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 1 3.8507 0.5686 -0.8428 6 6 3.9962 0.5365 1.3063 7 7 4.1307 2.5179 -0.1210 8 6 3.6324 3.6675 0.4194 9 6 4.4525 4.6918 0.1034 10 6 5.5132 4.1838 -0.6780 11 7 6.5236 4.8828 -1.1856 12 6 6.5963 6.2025 -0.9759 13 8 5.7367 6.7633 -0.3193 14 7 7.6205 6.9114 -1.4909 15 6 7.6968 8.3570 -1.2663 16 6 8.9453 8.9145 -1.9528 17 6 9.0243 10.4015 -1.7212 18 1 8.2601 10.8992 -1.1426 19 6 10.0720 11.1266 -2.2480 20 7 11.0027 10.5205 -2.9522 21 14 10.1694 12.9699 -1.9615 22 1 10.9352 13.2378 -0.7177 23 1 10.8527 13.6143 -3.1120 24 1 8.7979 13.5232 -1.8272 25 7 5.3098 2.8312 -0.8110 26 1 5.8771 2.2089 -1.2924 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.6885 1.8464 0.8900 31 1 1.6885 1.8465 -0.8900 32 1 3.6809 1.1526 2.1484 33 1 3.5533 -0.4554 1.3959 34 1 5.0828 0.4501 1.3056 35 1 2.7309 3.7444 1.0090 36 1 4.3191 5.7228 0.3957 37 1 8.3046 6.4649 -2.0140 38 1 6.8100 8.8365 -1.6808 39 1 7.7508 8.5561 -0.1959 40 1 9.8323 8.4351 -1.5387 41 1 8.8910 8.7155 -3.0230 42 1 11.7397 11.0306 -3.3232 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000432966562.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:07:35 Heat of formation + Delta-G solvation = 2.806561 kcal Electronic energy + Delta-G solvation = -22808.412308 eV Core-core repulsion = 19211.788838 eV Total energy + Delta-G solvation = -3596.623470 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 296.164 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.53315 -40.42750 -39.12045 -36.82106 -35.96568 -34.68396 -33.94787 -32.65188 -31.48670 -29.60278 -28.39638 -26.81987 -26.38123 -23.99278 -23.44056 -22.56619 -22.23169 -20.97303 -18.96168 -18.49850 -17.98279 -17.23175 -17.07966 -16.79449 -16.72556 -16.48792 -16.36036 -15.92074 -15.65376 -15.19337 -14.89492 -14.76560 -14.44797 -14.27401 -14.17451 -13.65979 -13.19204 -13.15191 -12.91754 -12.63962 -12.48739 -12.46843 -12.21165 -12.02543 -11.62819 -11.56157 -11.46504 -11.21738 -10.71525 -10.64617 -10.58147 -10.03372 -9.86682 -8.50302 -8.21203 -6.32666 0.14067 0.21708 1.42310 1.44719 1.56059 1.56297 2.21035 2.43662 2.72379 2.87172 3.08018 3.12405 3.53673 3.73415 3.79131 3.96022 4.17021 4.32982 4.41885 4.47939 4.53409 4.54866 4.58080 4.62528 4.73302 4.81941 4.86949 4.87776 4.93121 5.18295 5.23563 5.38180 5.60533 5.61896 5.76248 5.88828 5.97445 6.06099 6.19779 6.31840 6.77139 6.80887 7.01469 7.36211 8.06606 8.91275 Molecular weight = 296.16amu Principal moments of inertia in cm(-1) A = 0.054083 B = 0.002041 C = 0.002007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 517.601269 B =13713.207546 C =13951.153936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.401 6.401 3 C 0.054 3.946 4 C 0.163 3.837 5 H 0.117 0.883 6 C -0.162 4.162 7 N -0.367 5.367 8 C 0.185 3.815 9 C -0.340 4.340 10 C 0.474 3.526 11 N -0.711 5.711 12 C 0.671 3.329 13 O -0.657 6.657 14 N -0.718 5.718 15 C 0.162 3.838 16 C 0.024 3.976 17 C -0.546 4.546 18 H 0.061 0.939 19 C 0.003 3.997 20 N -0.929 5.929 21 Si 0.973 3.027 22 H -0.271 1.271 23 H -0.278 1.278 24 H -0.265 1.265 25 N -0.467 5.467 26 H 0.458 0.542 27 H 0.057 0.943 28 H 0.048 0.952 29 H 0.098 0.902 30 H 0.086 0.914 31 H 0.065 0.935 32 H 0.072 0.928 33 H 0.096 0.904 34 H 0.058 0.942 35 H 0.242 0.758 36 H 0.160 0.840 37 H 0.402 0.598 38 H 0.040 0.960 39 H 0.041 0.959 40 H 0.005 0.995 41 H 0.005 0.995 42 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.072 -28.646 8.457 38.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.320 6.320 3 C -0.025 4.025 4 C 0.063 3.937 5 H 0.135 0.865 6 C -0.220 4.220 7 N -0.158 5.158 8 C 0.046 3.954 9 C -0.373 4.373 10 C 0.217 3.783 11 N -0.473 5.473 12 C 0.370 3.630 13 O -0.542 6.542 14 N -0.370 5.370 15 C 0.037 3.963 16 C -0.014 4.014 17 C -0.584 4.584 18 H 0.079 0.921 19 C -0.195 4.195 20 N -0.568 5.568 21 Si 0.796 3.204 22 H -0.196 1.196 23 H -0.203 1.203 24 H -0.189 1.189 25 N -0.193 5.193 26 H 0.308 0.692 27 H 0.076 0.924 28 H 0.067 0.933 29 H 0.116 0.884 30 H 0.104 0.896 31 H 0.084 0.916 32 H 0.091 0.909 33 H 0.115 0.885 34 H 0.077 0.923 35 H 0.258 0.742 36 H 0.177 0.823 37 H 0.236 0.764 38 H 0.059 0.941 39 H 0.059 0.941 40 H 0.023 0.977 41 H 0.023 0.977 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -23.792 -28.984 8.307 38.408 hybrid contribution 0.583 1.163 -0.340 1.345 sum -23.209 -27.821 7.967 37.096 Atomic orbital electron populations 1.22971 0.78544 1.04152 1.01256 1.87780 1.21869 1.26570 1.95736 1.22723 0.90219 0.86201 1.03308 1.21421 0.92736 0.77307 1.02252 0.86513 1.22277 1.02059 1.02455 0.95255 1.46955 1.14185 1.08650 1.46014 1.23308 0.97939 0.82135 0.92018 1.22397 0.99721 1.02587 1.12549 1.18939 0.89398 0.83343 0.86597 1.68108 1.29587 1.07364 1.42234 1.16957 0.81537 0.85209 0.79260 1.90677 1.42072 1.74938 1.46475 1.45012 1.26955 1.08396 1.56631 1.21046 0.98506 0.77988 0.98751 1.19131 0.91788 0.95522 0.94924 1.21463 1.09416 0.93640 1.33931 0.92100 1.25974 0.94914 1.04204 0.94441 1.70093 1.12905 1.38066 1.35752 0.85337 0.78631 0.78417 0.77969 1.19597 1.20328 1.18914 1.44115 1.18290 1.06270 1.50667 0.69167 0.92416 0.93299 0.88364 0.89574 0.91629 0.90858 0.88540 0.92280 0.74245 0.82273 0.76408 0.94124 0.94080 0.97694 0.97675 0.92533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.05 11.01 113.37 1.25 1.30 16 2 O -0.40 -2.30 10.24 -148.98 -1.53 -3.82 16 3 C 0.05 0.16 4.85 71.98 0.35 0.51 16 4 C 0.16 0.77 3.63 44.99 0.16 0.93 16 5 H 0.12 0.43 8.14 -2.39 -0.02 0.41 16 6 C -0.16 -0.67 9.41 71.98 0.68 0.01 16 7 N -0.37 -4.05 3.56 -326.55 -1.16 -5.22 16 8 C 0.18 2.38 10.57 83.22 0.88 3.26 16 9 C -0.34 -9.16 9.52 22.25 0.21 -8.94 16 10 C 0.47 14.37 8.07 133.95 1.08 15.45 16 11 N -0.71 -28.12 10.59 -322.55 -3.42 -31.54 16 12 C 0.67 31.50 8.47 179.35 1.52 33.02 16 13 O -0.66 -33.02 13.26 -4.81 -0.06 -33.09 16 14 N -0.72 -34.06 5.56 -479.05 -2.66 -36.73 16 15 C 0.16 8.36 5.61 86.38 0.48 8.85 16 16 C 0.02 1.37 5.09 29.85 0.15 1.52 16 17 C -0.55 -33.11 9.11 25.60 0.23 -32.88 16 18 H 0.06 3.58 7.74 -2.91 -0.02 3.56 16 19 C 0.00 0.18 5.46 84.65 0.46 0.64 16 20 N -0.93 -57.91 13.29 21.45 0.28 -57.62 16 21 Si 0.97 46.04 29.54 68.60 2.03 48.06 16 22 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 23 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 24 H -0.26 -12.11 7.11 99.48 0.71 -11.40 16 25 N -0.47 -8.42 7.38 -54.79 -0.40 -8.83 16 26 H 0.46 6.09 8.96 -213.28 -1.91 4.18 16 27 H 0.06 0.00 8.14 -2.39 -0.02 -0.02 16 28 H 0.05 0.08 8.14 -2.39 -0.02 0.06 16 29 H 0.10 0.06 8.14 -2.39 -0.02 0.04 16 30 H 0.09 -0.08 7.40 -2.39 -0.02 -0.10 16 31 H 0.07 0.22 8.14 -2.38 -0.02 0.20 16 32 H 0.07 0.26 8.14 -2.39 -0.02 0.24 16 33 H 0.10 0.31 7.82 -2.38 -0.02 0.29 16 34 H 0.06 0.37 8.14 -2.39 -0.02 0.35 16 35 H 0.24 0.43 7.37 -2.91 -0.02 0.41 16 36 H 0.16 5.52 5.77 -2.91 -0.02 5.51 16 37 H 0.40 17.88 8.57 -92.71 -0.79 17.09 16 38 H 0.04 2.15 8.14 -2.38 -0.02 2.13 16 39 H 0.04 2.17 8.14 -2.38 -0.02 2.15 16 40 H 0.00 0.28 8.14 -2.38 -0.02 0.26 16 41 H 0.00 0.29 8.14 -2.39 -0.02 0.28 16 42 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 Total: -1.00 -87.25 357.06 -1.13 -88.38 By element: Atomic # 1 Polarization: 18.39 SS G_CDS: -1.67 Total: 16.73 kcal Atomic # 6 Polarization: 16.21 SS G_CDS: 7.46 Total: 23.67 kcal Atomic # 7 Polarization: -132.56 SS G_CDS: -7.36 Total: -139.93 kcal Atomic # 8 Polarization: -35.32 SS G_CDS: -1.59 Total: -36.91 kcal Atomic # 14 Polarization: 46.04 SS G_CDS: 2.03 Total: 48.06 kcal Total: -87.25 -1.13 -88.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000432966562.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.186 kcal (2) G-P(sol) polarization free energy of solvation -87.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.379 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds