Wall clock time and date at job start Tue Mar 31 2020 03:29:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86797 * 119.99914 * 2 1 4 4 H 1.48501 * 109.47294 * 270.00129 * 3 2 1 5 5 H 1.48500 * 109.47069 * 29.99978 * 3 2 1 6 6 H 1.48502 * 109.47160 * 149.99858 * 3 2 1 7 7 C 1.37872 * 119.99683 * 180.02562 * 2 1 3 8 8 H 1.08010 * 119.99627 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00605 * 0.02562 * 7 2 1 10 10 C 1.53119 * 109.52509 * 179.97438 * 9 7 2 11 11 C 1.53040 * 109.27917 * 177.55620 * 10 9 7 12 12 N 1.46842 * 109.52651 * 300.82804 * 11 10 9 13 13 C 1.46899 * 111.00041 * 185.83838 * 12 11 10 14 14 C 1.50703 * 109.47107 * 169.99728 * 13 12 11 15 15 O 1.21278 * 119.99985 * 359.97438 * 14 13 12 16 16 N 1.34777 * 120.00161 * 180.02562 * 14 13 12 17 17 C 1.46496 * 120.00271 * 180.02562 * 16 14 13 18 18 C 1.52997 * 109.47194 * 179.97438 * 17 16 14 19 19 H 1.09001 * 109.82279 * 305.69863 * 18 17 16 20 20 C 1.54383 * 109.83206 * 184.81378 * 18 17 16 21 21 C 1.55449 * 102.18764 * 219.18132 * 20 18 17 22 22 C 1.54941 * 100.98872 * 34.03603 * 21 20 18 23 23 O 1.43240 * 109.83215 * 66.58537 * 18 17 16 24 24 C 1.46843 * 111.20263 * 61.73690 * 12 11 10 25 25 C 1.53043 * 109.52446 * 298.26417 * 24 12 11 26 26 H 0.96994 * 120.00435 * 359.97438 * 1 2 3 27 27 H 1.09007 * 109.57464 * 59.84280 * 9 7 2 28 28 H 1.09002 * 109.50021 * 57.62347 * 10 9 7 29 29 H 1.09001 * 109.50518 * 297.50044 * 10 9 7 30 30 H 1.08998 * 109.46221 * 180.80268 * 11 10 9 31 31 H 1.09002 * 109.45774 * 60.84360 * 11 10 9 32 32 H 1.09002 * 109.47043 * 289.99708 * 13 12 11 33 33 H 1.09001 * 109.47354 * 49.99769 * 13 12 11 34 34 H 0.97005 * 119.99463 * 359.97438 * 16 14 13 35 35 H 1.09002 * 109.47021 * 299.99722 * 17 16 14 36 36 H 1.09001 * 109.47001 * 59.99554 * 17 16 14 37 37 H 1.09000 * 110.84292 * 337.31745 * 20 18 17 38 38 H 1.09004 * 110.84978 * 100.93618 * 20 18 17 39 39 H 1.09002 * 111.05771 * 276.11915 * 21 20 18 40 40 H 1.08998 * 111.18433 * 152.00929 * 21 20 18 41 41 H 1.09004 * 110.31377 * 204.68907 * 22 21 20 42 42 H 1.09007 * 110.31192 * 82.52335 * 22 21 20 43 43 H 1.09004 * 109.46019 * 58.27642 * 24 12 11 44 44 H 1.08999 * 109.46883 * 178.24462 * 24 12 11 45 45 H 1.09007 * 109.49669 * 299.23395 * 25 24 12 46 46 H 1.08996 * 109.50102 * 179.12000 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6526 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 6 2.2450 -3.6639 -0.0027 11 6 1.4752 -4.9852 0.0577 12 7 0.6543 -5.0197 1.2747 13 6 0.0082 -6.3290 1.4369 14 6 -0.6198 -6.4133 2.8042 15 8 -0.5368 -5.4754 3.5685 16 7 -1.2728 -7.5315 3.1781 17 6 -1.8837 -7.6133 4.5071 18 6 -2.5566 -8.9769 4.6760 19 1 -3.2563 -9.1477 3.8578 20 6 -3.3058 -9.0278 6.0249 21 6 -3.0186 -10.4780 6.5053 22 6 -1.5869 -10.6938 5.9536 23 8 -1.5645 -10.0099 4.6906 24 6 -0.3394 -3.9386 1.2759 25 6 0.3762 -2.5861 1.2519 26 1 -0.4850 0.8400 0.0004 27 1 0.6220 -2.5569 -0.8900 28 1 2.8998 -3.5842 0.8651 29 1 2.8422 -3.6319 -0.9141 30 1 2.1805 -5.8161 0.0715 31 1 0.8310 -5.0704 -0.8175 32 1 -0.7620 -6.4508 0.6752 33 1 0.7530 -7.1176 1.3299 34 1 -1.3389 -8.2818 2.5669 35 1 -1.1139 -7.4907 5.2690 36 1 -2.6290 -6.8250 4.6135 37 1 -2.8954 -8.2993 6.7242 38 1 -4.3747 -8.8698 5.8813 39 1 -3.7210 -11.1838 6.0619 40 1 -3.0344 -10.5430 7.5933 41 1 -1.3923 -11.7569 5.8117 42 1 -0.8510 -10.2609 6.6313 43 1 -0.9752 -4.0288 0.3951 44 1 -0.9521 -4.0094 2.1746 45 1 1.0016 -2.4895 2.1395 46 1 -0.3618 -1.7841 1.2370 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000519020648.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:29:19 Heat of formation + Delta-G solvation = -86.040629 kcal Electronic energy + Delta-G solvation = -24183.093654 eV Core-core repulsion = 20686.157824 eV Total energy + Delta-G solvation = -3496.935830 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.17049 -39.37184 -37.59464 -34.71400 -33.74191 -32.60092 -31.44440 -30.52957 -29.62988 -27.67303 -25.70843 -24.30722 -22.26428 -21.98566 -21.63540 -21.31019 -20.09983 -18.49523 -17.43453 -16.97905 -16.32968 -16.15283 -16.08671 -15.33730 -14.78821 -14.64265 -14.30157 -14.15060 -13.98112 -13.70478 -13.20157 -12.90064 -12.67881 -12.46558 -12.29456 -12.21476 -12.13273 -11.78075 -11.67018 -11.44138 -11.31118 -11.18865 -10.88182 -10.64866 -10.46077 -10.10764 -9.93916 -9.86748 -9.56984 -9.26300 -9.02313 -8.86304 -8.51978 -8.18760 -7.65977 -5.87631 -3.92569 2.88671 3.06891 3.37694 3.44146 3.47142 3.48320 4.00988 4.28950 4.41161 4.52632 4.57023 4.68790 4.76740 4.89449 5.06762 5.22291 5.26078 5.29026 5.33819 5.42182 5.44192 5.48081 5.51265 5.61699 5.77789 5.80869 5.96313 6.20285 6.31848 6.38063 6.47801 6.62339 6.74029 6.84463 6.96175 7.16750 7.28258 7.47539 7.61927 7.72648 7.80875 7.94080 8.17791 8.28534 8.46798 8.59369 9.11002 9.71124 11.18667 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.035997 B = 0.002572 C = 0.002473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.655408 B =10883.351259 C =11319.859778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.059 3.941 3 Si 0.890 3.110 4 H -0.283 1.283 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.508 4.508 8 H 0.054 0.946 9 C 0.046 3.954 10 C -0.106 4.106 11 C 0.061 3.939 12 N -0.519 5.519 13 C 0.037 3.963 14 C 0.512 3.488 15 O -0.513 6.513 16 N -0.734 5.734 17 C 0.113 3.887 18 C 0.069 3.931 19 H 0.087 0.913 20 C -0.149 4.149 21 C -0.156 4.156 22 C 0.049 3.951 23 O -0.375 6.375 24 C 0.054 3.946 25 C -0.100 4.100 26 H 0.258 0.742 27 H 0.019 0.981 28 H 0.057 0.943 29 H 0.050 0.950 30 H 0.058 0.942 31 H 0.024 0.976 32 H 0.055 0.945 33 H 0.096 0.904 34 H 0.400 0.600 35 H 0.070 0.930 36 H 0.076 0.924 37 H 0.083 0.917 38 H 0.086 0.914 39 H 0.078 0.922 40 H 0.084 0.916 41 H 0.085 0.915 42 H 0.061 0.939 43 H 0.015 0.985 44 H 0.073 0.927 45 H 0.044 0.956 46 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.929 -23.250 9.603 26.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.141 4.141 3 Si 0.718 3.282 4 H -0.209 1.209 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.547 4.547 8 H 0.072 0.928 9 C 0.028 3.972 10 C -0.144 4.144 11 C -0.066 4.066 12 N -0.244 5.244 13 C -0.095 4.095 14 C 0.298 3.702 15 O -0.386 6.386 16 N -0.389 5.389 17 C -0.011 4.011 18 C 0.011 3.989 19 H 0.105 0.895 20 C -0.187 4.187 21 C -0.194 4.194 22 C -0.027 4.027 23 O -0.295 6.295 24 C -0.073 4.073 25 C -0.138 4.138 26 H 0.068 0.932 27 H 0.037 0.963 28 H 0.076 0.924 29 H 0.069 0.931 30 H 0.076 0.924 31 H 0.043 0.957 32 H 0.073 0.927 33 H 0.115 0.885 34 H 0.234 0.766 35 H 0.088 0.912 36 H 0.094 0.906 37 H 0.102 0.898 38 H 0.105 0.895 39 H 0.097 0.903 40 H 0.103 0.897 41 H 0.104 0.896 42 H 0.080 0.920 43 H 0.033 0.967 44 H 0.092 0.908 45 H 0.063 0.937 46 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -7.556 -22.366 10.398 25.797 hybrid contribution -0.321 0.381 -0.763 0.911 sum -7.877 -21.985 9.635 25.263 Atomic orbital electron populations 1.69887 1.05856 1.26185 1.51235 1.24974 0.94836 0.98976 0.95319 0.86635 0.79947 0.83745 0.77892 1.20881 1.21335 1.19968 1.21213 0.92854 0.90705 1.49884 0.92778 1.18712 0.92738 0.91704 0.94073 1.21674 0.98739 0.93635 1.00315 1.22153 0.95647 0.99576 0.89237 1.61744 1.23899 1.00529 1.38247 1.21918 0.98690 0.95531 0.93376 1.20755 0.77882 0.81926 0.89637 1.90710 1.57515 1.36610 1.53786 1.45905 1.57739 1.18223 1.17019 1.21688 0.97886 0.95876 0.85688 1.23019 0.89801 0.87492 0.98618 0.89485 1.23139 1.01701 0.97642 0.96198 1.23294 0.97373 0.96650 1.02080 1.23402 0.96254 0.97572 0.85501 1.88466 1.57538 1.48395 1.35065 1.22429 0.93077 0.92682 0.99130 1.21602 1.00095 0.92941 0.99182 0.93185 0.96254 0.92381 0.93105 0.92394 0.95745 0.92704 0.88550 0.76601 0.91185 0.90623 0.89817 0.89501 0.90285 0.89715 0.89639 0.92044 0.96685 0.90845 0.93719 0.89118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.40 11.37 55.43 0.63 -25.77 16 2 C 0.06 1.71 5.31 -17.82 -0.09 1.61 16 3 Si 0.89 22.05 29.54 -169.99 -5.02 17.02 16 4 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 7 C -0.51 -14.53 8.56 -34.44 -0.29 -14.83 16 8 H 0.05 1.53 7.75 -52.48 -0.41 1.12 16 9 C 0.05 1.21 2.16 -91.65 -0.20 1.01 16 10 C -0.11 -2.33 5.32 -26.65 -0.14 -2.47 16 11 C 0.06 1.14 5.46 -3.84 -0.02 1.12 16 12 N -0.52 -10.08 4.40 -236.11 -1.04 -11.12 16 13 C 0.04 0.54 5.45 -4.98 -0.03 0.52 16 14 C 0.51 7.99 7.50 -10.98 -0.08 7.91 16 15 O -0.51 -10.35 14.33 5.56 0.08 -10.27 16 16 N -0.73 -8.44 5.53 -60.30 -0.33 -8.78 16 17 C 0.11 1.17 5.21 -4.05 -0.02 1.15 16 18 C 0.07 0.53 3.56 -26.01 -0.09 0.43 16 19 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 20 C -0.15 -0.85 6.56 -24.71 -0.16 -1.01 16 21 C -0.16 -0.76 7.16 -24.41 -0.17 -0.94 16 22 C 0.05 0.32 7.78 38.18 0.30 0.62 16 23 O -0.38 -3.42 10.99 -35.23 -0.39 -3.81 16 24 C 0.05 1.18 5.11 -3.83 -0.02 1.16 16 25 C -0.10 -2.57 5.12 -26.65 -0.14 -2.71 16 26 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 27 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 28 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 29 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 30 H 0.06 0.92 8.02 -51.93 -0.42 0.51 16 31 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.73 8.12 -51.93 -0.42 0.31 16 33 H 0.10 1.19 7.99 -51.93 -0.41 0.78 16 34 H 0.40 3.60 8.47 -40.82 -0.35 3.25 16 35 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.08 0.49 7.85 -51.93 -0.41 0.08 16 38 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 40 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 41 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 42 H 0.06 0.40 8.14 -51.92 -0.42 -0.02 16 43 H 0.01 0.33 8.14 -51.93 -0.42 -0.10 16 44 H 0.07 1.65 5.78 -51.93 -0.30 1.35 16 45 H 0.04 1.21 8.14 -51.92 -0.42 0.78 16 46 H 0.09 2.56 6.17 -51.93 -0.32 2.24 16 LS Contribution 360.17 15.07 5.43 5.43 Total: -1.00 -33.64 360.17 -9.90 -43.54 By element: Atomic # 1 Polarization: 8.26 SS G_CDS: -8.09 Total: 0.17 kcal Atomic # 6 Polarization: -5.26 SS G_CDS: -1.17 Total: -6.42 kcal Atomic # 7 Polarization: -44.92 SS G_CDS: -0.74 Total: -45.66 kcal Atomic # 8 Polarization: -13.77 SS G_CDS: -0.31 Total: -14.08 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -33.64 -9.90 -43.54 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000519020648.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.500 kcal (2) G-P(sol) polarization free energy of solvation -33.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds