Wall clock time and date at job start Tue Mar 31 2020 03:29:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86797 * 119.99914 * 2 1 4 4 H 1.48501 * 109.47294 * 270.00129 * 3 2 1 5 5 H 1.48500 * 109.47069 * 29.99978 * 3 2 1 6 6 H 1.48502 * 109.47160 * 149.99858 * 3 2 1 7 7 C 1.37872 * 119.99683 * 180.02562 * 2 1 3 8 8 H 1.08010 * 119.99627 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00605 * 0.02562 * 7 2 1 10 10 C 1.53119 * 109.52509 * 179.97438 * 9 7 2 11 11 C 1.53040 * 109.27917 * 177.55620 * 10 9 7 12 12 N 1.46842 * 109.52651 * 300.82804 * 11 10 9 13 13 C 1.46899 * 111.00041 * 185.83838 * 12 11 10 14 14 C 1.50703 * 109.47107 * 169.99728 * 13 12 11 15 15 O 1.21278 * 119.99985 * 359.97438 * 14 13 12 16 16 N 1.34777 * 120.00161 * 180.02562 * 14 13 12 17 17 C 1.46496 * 120.00271 * 180.02562 * 16 14 13 18 18 C 1.52997 * 109.47194 * 179.97438 * 17 16 14 19 19 H 1.09001 * 109.82279 * 305.69863 * 18 17 16 20 20 C 1.54383 * 109.83206 * 184.81378 * 18 17 16 21 21 C 1.55449 * 102.18764 * 219.18132 * 20 18 17 22 22 C 1.54941 * 100.98872 * 34.03603 * 21 20 18 23 23 O 1.43240 * 109.83215 * 66.58537 * 18 17 16 24 24 C 1.46843 * 111.20263 * 61.73690 * 12 11 10 25 25 C 1.53043 * 109.52446 * 298.26417 * 24 12 11 26 26 H 0.96994 * 120.00435 * 359.97438 * 1 2 3 27 27 H 1.09007 * 109.57464 * 59.84280 * 9 7 2 28 28 H 1.09002 * 109.50021 * 57.62347 * 10 9 7 29 29 H 1.09001 * 109.50518 * 297.50044 * 10 9 7 30 30 H 1.08998 * 109.46221 * 180.80268 * 11 10 9 31 31 H 1.09002 * 109.45774 * 60.84360 * 11 10 9 32 32 H 1.09002 * 109.47043 * 289.99708 * 13 12 11 33 33 H 1.09001 * 109.47354 * 49.99769 * 13 12 11 34 34 H 0.97005 * 119.99463 * 359.97438 * 16 14 13 35 35 H 1.09002 * 109.47021 * 299.99722 * 17 16 14 36 36 H 1.09001 * 109.47001 * 59.99554 * 17 16 14 37 37 H 1.09000 * 110.84292 * 337.31745 * 20 18 17 38 38 H 1.09004 * 110.84978 * 100.93618 * 20 18 17 39 39 H 1.09002 * 111.05771 * 276.11915 * 21 20 18 40 40 H 1.08998 * 111.18433 * 152.00929 * 21 20 18 41 41 H 1.09004 * 110.31377 * 204.68907 * 22 21 20 42 42 H 1.09007 * 110.31192 * 82.52335 * 22 21 20 43 43 H 1.09004 * 109.46019 * 58.27642 * 24 12 11 44 44 H 1.08999 * 109.46883 * 178.24462 * 24 12 11 45 45 H 1.09007 * 109.49669 * 299.23395 * 25 24 12 46 46 H 1.08996 * 109.50102 * 179.12000 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6526 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 6 2.2450 -3.6639 -0.0027 11 6 1.4752 -4.9852 0.0577 12 7 0.6543 -5.0197 1.2747 13 6 0.0082 -6.3290 1.4369 14 6 -0.6198 -6.4133 2.8042 15 8 -0.5368 -5.4754 3.5685 16 7 -1.2728 -7.5315 3.1781 17 6 -1.8837 -7.6133 4.5071 18 6 -2.5566 -8.9769 4.6760 19 1 -3.2563 -9.1477 3.8578 20 6 -3.3058 -9.0278 6.0249 21 6 -3.0186 -10.4780 6.5053 22 6 -1.5869 -10.6938 5.9536 23 8 -1.5645 -10.0099 4.6906 24 6 -0.3394 -3.9386 1.2759 25 6 0.3762 -2.5861 1.2519 26 1 -0.4850 0.8400 0.0004 27 1 0.6220 -2.5569 -0.8900 28 1 2.8998 -3.5842 0.8651 29 1 2.8422 -3.6319 -0.9141 30 1 2.1805 -5.8161 0.0715 31 1 0.8310 -5.0704 -0.8175 32 1 -0.7620 -6.4508 0.6752 33 1 0.7530 -7.1176 1.3299 34 1 -1.3389 -8.2818 2.5669 35 1 -1.1139 -7.4907 5.2690 36 1 -2.6290 -6.8250 4.6135 37 1 -2.8954 -8.2993 6.7242 38 1 -4.3747 -8.8698 5.8813 39 1 -3.7210 -11.1838 6.0619 40 1 -3.0344 -10.5430 7.5933 41 1 -1.3923 -11.7569 5.8117 42 1 -0.8510 -10.2609 6.6313 43 1 -0.9752 -4.0288 0.3951 44 1 -0.9521 -4.0094 2.1746 45 1 1.0016 -2.4895 2.1395 46 1 -0.3618 -1.7841 1.2370 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000519020648.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:29:19 Heat of formation + Delta-G solvation = -110.622972 kcal Electronic energy + Delta-G solvation = -24184.159625 eV Core-core repulsion = 20686.157824 eV Total energy + Delta-G solvation = -3498.001801 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.12202 -40.32733 -39.16178 -35.85516 -35.56445 -33.33582 -33.09707 -31.48432 -31.33049 -29.07628 -27.06678 -25.69332 -23.76748 -23.28601 -22.65606 -22.18081 -21.22534 -20.35933 -18.44081 -18.08061 -17.98556 -17.31089 -16.78034 -16.62176 -16.48175 -15.99141 -15.60435 -15.32436 -15.03460 -14.80126 -14.45681 -14.38598 -14.11074 -13.94211 -13.74131 -13.46055 -13.06283 -12.84440 -12.80483 -12.68115 -12.53633 -12.36075 -12.34171 -12.09696 -12.00713 -11.85561 -11.72130 -11.35526 -10.97385 -10.79856 -10.54730 -10.48833 -10.35195 -10.06150 -9.15049 -8.07292 -6.20728 1.39796 1.41375 1.51761 1.69518 2.09695 2.44041 2.85682 3.13433 3.19554 3.53104 3.71804 3.89902 3.97819 4.16301 4.19246 4.22225 4.30793 4.31564 4.41303 4.42099 4.52346 4.59908 4.62944 4.67652 4.79443 4.83267 4.92672 4.93696 4.97207 5.02607 5.05250 5.11277 5.24071 5.26346 5.34093 5.46490 5.59438 5.62728 5.98913 6.01441 6.04051 6.21327 6.31665 6.41694 6.63870 6.91236 7.34929 7.46669 8.97594 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.035997 B = 0.002572 C = 0.002473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.655408 B =10883.351259 C =11319.859778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.008 3.992 3 Si 0.955 3.045 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.270 1.270 7 C -0.533 4.533 8 H 0.052 0.948 9 C 0.043 3.957 10 C -0.101 4.101 11 C 0.068 3.932 12 N -0.537 5.537 13 C 0.037 3.963 14 C 0.509 3.491 15 O -0.568 6.568 16 N -0.715 5.715 17 C 0.111 3.889 18 C 0.074 3.926 19 H 0.102 0.898 20 C -0.149 4.149 21 C -0.148 4.148 22 C 0.040 3.960 23 O -0.396 6.396 24 C 0.071 3.929 25 C -0.090 4.090 26 H 0.260 0.740 27 H -0.007 1.007 28 H 0.045 0.955 29 H 0.061 0.939 30 H 0.098 0.902 31 H 0.032 0.968 32 H 0.080 0.920 33 H 0.132 0.868 34 H 0.416 0.584 35 H 0.051 0.949 36 H 0.071 0.929 37 H 0.078 0.922 38 H 0.102 0.898 39 H 0.089 0.911 40 H 0.097 0.903 41 H 0.097 0.903 42 H 0.056 0.944 43 H 0.016 0.984 44 H 0.066 0.934 45 H 0.019 0.981 46 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.977 -25.563 9.362 28.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.190 4.190 3 Si 0.781 3.219 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.194 1.194 7 C -0.571 4.571 8 H 0.070 0.930 9 C 0.025 3.975 10 C -0.139 4.139 11 C -0.059 4.059 12 N -0.263 5.263 13 C -0.093 4.093 14 C 0.296 3.704 15 O -0.447 6.447 16 N -0.369 5.369 17 C -0.013 4.013 18 C 0.016 3.984 19 H 0.119 0.881 20 C -0.187 4.187 21 C -0.186 4.186 22 C -0.036 4.036 23 O -0.316 6.316 24 C -0.056 4.056 25 C -0.129 4.129 26 H 0.069 0.931 27 H 0.011 0.989 28 H 0.064 0.936 29 H 0.080 0.920 30 H 0.116 0.884 31 H 0.051 0.949 32 H 0.098 0.902 33 H 0.150 0.850 34 H 0.252 0.748 35 H 0.069 0.931 36 H 0.089 0.911 37 H 0.097 0.903 38 H 0.121 0.879 39 H 0.107 0.893 40 H 0.116 0.884 41 H 0.116 0.884 42 H 0.074 0.926 43 H 0.034 0.966 44 H 0.084 0.916 45 H 0.037 0.963 46 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -7.613 -24.750 10.143 27.810 hybrid contribution -0.313 1.044 -0.659 1.274 sum -7.925 -23.706 9.484 26.734 Atomic orbital electron populations 1.70032 1.07233 1.27014 1.51656 1.25799 0.95731 1.02548 0.94914 0.85597 0.78661 0.79347 0.78299 1.19787 1.20992 1.19448 1.21609 0.93028 0.92304 1.50147 0.93001 1.18681 0.93216 0.92888 0.92730 1.21555 0.97963 0.94112 1.00271 1.22111 0.96035 0.98617 0.89187 1.61572 1.23850 1.01929 1.38926 1.22055 1.00206 0.93679 0.93406 1.20996 0.77775 0.82055 0.89618 1.90697 1.59919 1.38729 1.55310 1.45771 1.56039 1.17463 1.17621 1.21784 0.97267 0.97794 0.84464 1.23025 0.89502 0.85556 1.00296 0.88073 1.23175 1.02312 0.98227 0.94974 1.23285 0.96316 0.96053 1.02921 1.23581 0.97341 0.97978 0.84713 1.88434 1.58141 1.48690 1.36344 1.22050 0.93059 0.91804 0.98714 1.21358 0.98998 0.94603 0.97929 0.93143 0.98917 0.93588 0.92033 0.88423 0.94940 0.90183 0.85031 0.74773 0.93069 0.91076 0.90329 0.87942 0.89282 0.88398 0.88448 0.92569 0.96629 0.91614 0.96253 0.92472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.03 11.37 21.45 0.24 -55.78 16 2 C 0.01 0.47 5.31 84.65 0.45 0.92 16 3 Si 0.96 45.87 29.54 68.60 2.03 47.90 16 4 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 5 H -0.28 -13.41 7.11 99.48 0.71 -12.70 16 6 H -0.27 -12.64 7.11 99.48 0.71 -11.93 16 7 C -0.53 -31.21 8.56 25.60 0.22 -30.99 16 8 H 0.05 2.98 7.75 -2.91 -0.02 2.95 16 9 C 0.04 2.33 2.16 -11.46 -0.02 2.30 16 10 C -0.10 -4.41 5.32 30.65 0.16 -4.24 16 11 C 0.07 2.35 5.46 86.33 0.47 2.83 16 12 N -0.54 -20.16 4.40 -900.93 -3.96 -24.12 16 13 C 0.04 1.00 5.45 85.56 0.47 1.47 16 14 C 0.51 15.31 7.50 87.66 0.66 15.96 16 15 O -0.57 -23.29 14.33 -3.02 -0.04 -23.33 16 16 N -0.72 -15.30 5.53 -463.07 -2.56 -17.86 16 17 C 0.11 2.23 5.21 86.38 0.45 2.68 16 18 C 0.07 1.01 3.56 31.06 0.11 1.12 16 19 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 20 C -0.15 -1.43 6.56 31.91 0.21 -1.22 16 21 C -0.15 -1.10 7.16 32.10 0.23 -0.87 16 22 C 0.04 0.45 7.78 72.65 0.57 1.02 16 23 O -0.40 -6.55 10.99 -148.98 -1.64 -8.18 16 24 C 0.07 3.18 5.11 86.33 0.44 3.62 16 25 C -0.09 -4.85 5.12 30.65 0.16 -4.69 16 26 H 0.26 15.01 8.31 -92.71 -0.77 14.23 16 27 H -0.01 -0.43 8.14 -2.38 -0.02 -0.45 16 28 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 29 H 0.06 2.50 8.14 -2.39 -0.02 2.48 16 30 H 0.10 2.68 8.02 -2.39 -0.02 2.66 16 31 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.08 1.82 8.12 -2.39 -0.02 1.80 16 33 H 0.13 2.66 7.99 -2.39 -0.02 2.64 16 34 H 0.42 6.35 8.47 -92.70 -0.79 5.56 16 35 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 36 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 37 H 0.08 0.84 7.85 -2.39 -0.02 0.82 16 38 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 39 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 40 H 0.10 0.49 8.14 -2.39 -0.02 0.47 16 41 H 0.10 0.85 8.14 -2.38 -0.02 0.83 16 42 H 0.06 0.68 8.14 -2.38 -0.02 0.66 16 43 H 0.02 0.68 8.14 -2.38 -0.02 0.66 16 44 H 0.07 3.03 5.78 -2.39 -0.01 3.02 16 45 H 0.02 1.08 8.14 -2.38 -0.02 1.06 16 46 H 0.06 3.41 6.17 -2.39 -0.01 3.39 16 Total: -1.00 -75.88 360.17 -1.20 -77.08 By element: Atomic # 1 Polarization: 14.23 SS G_CDS: 0.17 Total: 14.40 kcal Atomic # 6 Polarization: -14.66 SS G_CDS: 4.56 Total: -10.10 kcal Atomic # 7 Polarization: -91.49 SS G_CDS: -6.28 Total: -97.77 kcal Atomic # 8 Polarization: -29.83 SS G_CDS: -1.68 Total: -31.51 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 2.03 Total: 47.90 kcal Total: -75.88 -1.20 -77.08 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000519020648.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.541 kcal (2) G-P(sol) polarization free energy of solvation -75.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds