Wall clock time and date at job start Tue Mar 31 2020 03:30:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86802 * 119.99799 * 2 1 4 4 H 1.48497 * 109.47337 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47119 * 300.00106 * 3 2 1 6 6 H 1.48507 * 109.47266 * 59.99913 * 3 2 1 7 7 C 1.37876 * 120.00682 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00235 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99472 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.47085 * 179.97438 * 9 7 2 11 11 C 1.53346 * 109.41904 * 295.13082 * 10 9 7 12 12 C 1.53195 * 109.14901 * 178.67276 * 11 10 9 13 13 N 1.46919 * 108.89273 * 54.57640 * 12 11 10 14 14 C 1.34778 * 120.63255 * 126.34238 * 13 12 11 15 15 O 1.21279 * 120.00169 * 359.97438 * 14 13 12 16 16 C 1.50698 * 120.00023 * 179.97438 * 14 13 12 17 17 C 1.53003 * 109.46931 * 180.02562 * 16 14 13 18 18 O 1.42906 * 109.46934 * 180.02562 * 17 16 14 19 19 C 1.42907 * 113.99970 * 179.97438 * 18 17 16 20 20 C 1.53927 * 113.73391 * 246.73032 * 19 18 17 21 21 N 1.47967 * 86.17953 * 221.91934 * 20 19 18 22 22 C 1.47959 * 90.76202 * 24.68649 * 21 20 19 23 23 C 1.46933 * 118.74003 * 306.32349 * 13 12 11 24 24 C 1.53034 * 109.46014 * 174.99948 * 10 9 7 25 25 H 0.97001 * 120.00836 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.47447 * 60.00201 * 9 7 2 27 27 H 1.08997 * 109.47449 * 299.99919 * 9 7 2 28 28 H 1.09001 * 109.45799 * 55.03110 * 10 9 7 29 29 H 1.08997 * 109.68637 * 58.70485 * 11 10 9 30 30 H 1.09002 * 109.47277 * 298.50741 * 11 10 9 31 31 H 1.09002 * 109.58720 * 294.71670 * 12 11 10 32 32 H 1.08996 * 109.58651 * 174.43567 * 12 11 10 33 33 H 1.09001 * 109.47488 * 299.99559 * 16 14 13 34 34 H 1.09001 * 109.47269 * 59.99982 * 16 14 13 35 35 H 1.08996 * 109.47074 * 299.99864 * 17 16 14 36 36 H 1.09001 * 109.47188 * 59.99897 * 17 16 14 37 37 H 1.09002 * 112.93389 * 18.43304 * 19 18 17 38 38 H 1.09007 * 113.75654 * 336.23298 * 20 19 18 39 39 H 1.08999 * 113.76249 * 107.59947 * 20 19 18 40 40 H 1.00898 * 110.99961 * 137.58126 * 21 20 19 41 41 H 1.08990 * 113.76119 * 220.99173 * 22 21 20 42 42 H 1.09010 * 113.85787 * 89.64112 * 22 21 20 43 43 H 1.08994 * 109.58580 * 173.39910 * 23 13 12 44 44 H 1.09006 * 109.57831 * 293.67403 * 23 13 12 45 45 H 1.08994 * 109.50232 * 61.43679 * 24 10 9 46 46 H 1.09007 * 109.52628 * 301.35340 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8902 2.3965 -1.2125 6 1 1.8902 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 6 3.0435 -3.6504 -1.3088 12 6 4.0596 -4.7967 -1.2881 13 7 3.3508 -6.0559 -1.0228 14 6 3.4927 -7.1112 -1.8491 15 8 4.2106 -7.0266 -2.8229 16 6 2.7594 -8.3962 -1.5629 17 6 3.0924 -9.4253 -2.6452 18 8 2.3965 -10.6437 -2.3741 19 6 2.6392 -11.6769 -3.3312 20 6 1.4022 -12.0487 -4.1685 21 7 1.8239 -13.4551 -3.9856 22 6 2.5478 -13.0976 -2.7458 23 6 2.4846 -6.1432 0.1609 24 6 1.4842 -4.9836 0.1263 25 1 -0.4851 0.8400 0.0004 26 1 0.6248 -2.5571 -0.8897 27 1 0.6241 -2.5567 0.8902 28 1 2.9291 -3.5552 0.8427 29 1 3.5686 -2.7006 -1.4103 30 1 2.3633 -3.7824 -2.1502 31 1 4.7951 -4.6190 -0.5035 32 1 4.5624 -4.8568 -2.2533 33 1 3.0658 -8.7807 -0.5901 34 1 1.6857 -8.2085 -1.5577 35 1 2.7863 -9.0412 -3.6182 36 1 4.1661 -9.6130 -2.6500 37 1 3.5369 -11.5038 -3.9247 38 1 0.4557 -11.8075 -3.6846 39 1 1.4523 -11.7060 -5.2020 40 1 1.0318 -14.0468 -3.7840 41 1 3.5132 -13.5929 -2.6425 42 1 1.9379 -13.1629 -1.8446 43 1 1.9462 -7.0909 0.1506 44 1 3.0920 -6.0779 1.0637 45 1 0.8185 -5.1029 -0.7285 46 1 0.8987 -4.9808 1.0458 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000570216545.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:30:50 Heat of formation + Delta-G solvation = -66.431052 kcal Electronic energy + Delta-G solvation = -23778.944333 eV Core-core repulsion = 20282.858838 eV Total energy + Delta-G solvation = -3496.085495 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.24643 -39.87416 -37.56997 -36.78297 -34.07682 -32.35504 -31.80394 -30.49889 -28.13238 -26.89767 -26.45136 -24.86251 -23.94818 -22.54941 -21.69863 -20.48725 -19.73144 -18.63968 -18.06274 -16.99165 -16.45810 -16.27599 -16.22052 -15.67537 -15.06486 -14.59885 -14.50520 -14.08463 -13.88311 -13.71031 -13.39986 -13.26717 -13.04672 -12.93529 -12.84124 -12.25582 -12.25289 -11.92165 -11.48345 -11.37723 -11.26343 -11.21493 -11.03954 -10.77416 -10.73230 -10.44433 -10.21171 -9.81563 -9.77211 -9.66080 -9.49783 -9.30033 -8.98951 -8.41688 -8.37157 -6.02446 -4.04300 2.63819 2.84106 3.28919 3.37042 3.40262 3.46542 3.65688 4.09506 4.43513 4.52193 4.54675 4.75660 4.82318 4.93183 4.98782 5.06545 5.19789 5.28548 5.31433 5.32001 5.32822 5.41176 5.43839 5.55003 5.56412 5.61683 5.63436 5.65159 5.79412 5.94315 6.03688 6.31388 6.32383 6.49229 6.61315 6.69222 6.87631 6.94607 6.97759 7.08109 7.49807 7.63563 7.77729 7.96996 8.19288 8.39683 9.02336 9.59815 11.08818 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.036924 B = 0.002337 C = 0.002292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.126647 B =11976.269213 C =12215.658209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.056 3.944 3 Si 0.889 3.111 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.516 4.516 8 H 0.057 0.943 9 C 0.027 3.973 10 C -0.081 4.081 11 C -0.118 4.118 12 C 0.108 3.892 13 N -0.603 5.603 14 C 0.517 3.483 15 O -0.553 6.553 16 C -0.139 4.139 17 C 0.078 3.922 18 O -0.379 6.379 19 C 0.061 3.939 20 C -0.014 4.014 21 N -0.634 5.634 22 C 0.005 3.995 23 C 0.105 3.895 24 C -0.131 4.131 25 H 0.259 0.741 26 H 0.015 0.985 27 H 0.016 0.984 28 H 0.058 0.942 29 H 0.084 0.916 30 H 0.057 0.943 31 H 0.064 0.936 32 H 0.085 0.915 33 H 0.100 0.900 34 H 0.102 0.898 35 H 0.060 0.940 36 H 0.059 0.941 37 H 0.098 0.902 38 H 0.077 0.923 39 H 0.092 0.908 40 H 0.326 0.674 41 H 0.094 0.906 42 H 0.077 0.923 43 H 0.079 0.921 44 H 0.069 0.931 45 H 0.062 0.938 46 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.883 -23.228 -2.519 23.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.145 4.145 3 Si 0.717 3.283 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.554 4.554 8 H 0.075 0.925 9 C -0.010 4.010 10 C -0.100 4.100 11 C -0.156 4.156 12 C -0.014 4.014 13 N -0.336 5.336 14 C 0.305 3.695 15 O -0.431 6.431 16 C -0.179 4.179 17 C 0.001 3.999 18 O -0.298 6.298 19 C 0.002 3.998 20 C -0.144 4.144 21 N -0.261 5.261 22 C -0.125 4.125 23 C -0.018 4.018 24 C -0.169 4.169 25 H 0.069 0.931 26 H 0.033 0.967 27 H 0.034 0.966 28 H 0.077 0.923 29 H 0.103 0.897 30 H 0.076 0.924 31 H 0.082 0.918 32 H 0.103 0.897 33 H 0.118 0.882 34 H 0.120 0.880 35 H 0.078 0.922 36 H 0.077 0.923 37 H 0.116 0.884 38 H 0.095 0.905 39 H 0.110 0.890 40 H 0.139 0.861 41 H 0.112 0.888 42 H 0.095 0.905 43 H 0.097 0.903 44 H 0.087 0.913 45 H 0.080 0.920 46 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 4.591 -23.238 -3.463 23.939 hybrid contribution -0.326 1.298 0.633 1.481 sum 4.265 -21.940 -2.830 22.529 Atomic orbital electron populations 1.69964 1.06048 1.26451 1.51032 1.25025 0.94818 0.99236 0.95453 0.86584 0.80143 0.84007 0.77550 1.19742 1.21085 1.21096 1.21274 0.92995 0.90934 1.50197 0.92528 1.19127 0.93590 0.91081 0.97159 1.21253 0.97987 0.94505 0.96259 1.21949 0.97610 0.97256 0.98749 1.21792 0.94921 0.82671 1.01983 1.48160 1.46491 1.12905 1.26028 1.20297 0.81770 0.84901 0.82501 1.90682 1.40311 1.83624 1.28525 1.21503 1.02604 0.92717 1.01063 1.22220 0.96226 0.83622 0.97849 1.87874 1.69795 1.22200 1.49891 1.24131 0.98105 0.87008 0.90560 1.24328 0.98535 0.89818 1.01733 1.66822 1.23650 1.07617 1.28004 1.24052 1.00912 0.94072 0.93472 1.21883 0.92661 0.99936 0.87310 1.22030 0.97525 0.94971 1.02349 0.93097 0.96654 0.96592 0.92312 0.89712 0.92371 0.91817 0.89665 0.88179 0.87983 0.92199 0.92254 0.88440 0.90477 0.89014 0.86142 0.88812 0.90474 0.90298 0.91309 0.91952 0.90947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.43 13.28 55.43 0.74 -25.69 16 2 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 3 Si 0.89 21.29 29.54 -169.99 -5.02 16.27 16 4 H -0.27 -6.38 7.11 56.52 0.40 -5.97 16 5 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 7 C -0.52 -13.92 8.39 -34.44 -0.29 -14.21 16 8 H 0.06 1.48 7.06 -52.49 -0.37 1.11 16 9 C 0.03 0.67 4.45 -27.88 -0.12 0.54 16 10 C -0.08 -1.53 2.10 -90.42 -0.19 -1.72 16 11 C -0.12 -2.10 5.21 -26.45 -0.14 -2.24 16 12 C 0.11 1.66 6.42 -3.71 -0.02 1.63 16 13 N -0.60 -8.43 2.97 -172.77 -0.51 -8.95 16 14 C 0.52 7.23 7.70 -10.99 -0.08 7.15 16 15 O -0.55 -9.50 15.39 5.56 0.09 -9.41 16 16 C -0.14 -1.44 4.42 -27.88 -0.12 -1.56 16 17 C 0.08 0.81 5.07 37.16 0.19 1.00 16 18 O -0.38 -3.81 10.36 -35.23 -0.37 -4.17 16 19 C 0.06 0.52 4.50 -25.80 -0.12 0.40 16 20 C -0.01 -0.11 8.73 -2.77 -0.02 -0.13 16 21 N -0.63 -4.75 8.53 -117.24 -1.00 -5.75 16 22 C 0.01 0.04 8.73 -2.77 -0.02 0.01 16 23 C 0.10 1.26 6.34 -3.71 -0.02 1.24 16 24 C -0.13 -1.97 5.36 -26.62 -0.14 -2.11 16 25 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 26 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 29 H 0.08 1.63 6.93 -51.93 -0.36 1.27 16 30 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 31 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.08 1.36 7.00 -51.93 -0.36 1.00 16 33 H 0.10 0.88 7.94 -51.93 -0.41 0.46 16 34 H 0.10 0.97 7.69 -51.93 -0.40 0.57 16 35 H 0.06 0.67 8.10 -51.93 -0.42 0.25 16 36 H 0.06 0.63 8.10 -51.93 -0.42 0.21 16 37 H 0.10 0.80 7.87 -51.93 -0.41 0.39 16 38 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.33 1.90 8.91 -39.29 -0.35 1.55 16 41 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 42 H 0.08 0.51 8.14 -51.92 -0.42 0.09 16 43 H 0.08 0.74 5.93 -51.93 -0.31 0.43 16 44 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 45 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 46 H 0.07 1.04 8.14 -51.92 -0.42 0.62 16 LS Contribution 365.85 15.07 5.51 5.51 Total: -1.00 -31.51 365.85 -9.80 -41.31 By element: Atomic # 1 Polarization: 7.44 SS G_CDS: -8.02 Total: -0.59 kcal Atomic # 6 Polarization: -7.32 SS G_CDS: -1.21 Total: -8.53 kcal Atomic # 7 Polarization: -39.62 SS G_CDS: -0.78 Total: -40.39 kcal Atomic # 8 Polarization: -13.30 SS G_CDS: -0.28 Total: -13.58 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -31.51 -9.80 -41.31 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000570216545.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.124 kcal (2) G-P(sol) polarization free energy of solvation -31.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds