Wall clock time and date at job start Tue Mar 31 2020 03:30:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86802 * 119.99799 * 2 1 4 4 H 1.48497 * 109.47337 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47119 * 300.00106 * 3 2 1 6 6 H 1.48507 * 109.47266 * 59.99913 * 3 2 1 7 7 C 1.37876 * 120.00682 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00235 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99472 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.47085 * 179.97438 * 9 7 2 11 11 C 1.53346 * 109.41904 * 295.13082 * 10 9 7 12 12 C 1.53195 * 109.14901 * 178.67276 * 11 10 9 13 13 N 1.46919 * 108.89273 * 54.57640 * 12 11 10 14 14 C 1.34778 * 120.63255 * 126.34238 * 13 12 11 15 15 O 1.21279 * 120.00169 * 359.97438 * 14 13 12 16 16 C 1.50698 * 120.00023 * 179.97438 * 14 13 12 17 17 C 1.53003 * 109.46931 * 180.02562 * 16 14 13 18 18 O 1.42906 * 109.46934 * 180.02562 * 17 16 14 19 19 C 1.42907 * 113.99970 * 179.97438 * 18 17 16 20 20 C 1.53927 * 113.73391 * 246.73032 * 19 18 17 21 21 N 1.47967 * 86.17953 * 221.91934 * 20 19 18 22 22 C 1.47959 * 90.76202 * 24.68649 * 21 20 19 23 23 C 1.46933 * 118.74003 * 306.32349 * 13 12 11 24 24 C 1.53034 * 109.46014 * 174.99948 * 10 9 7 25 25 H 0.97001 * 120.00836 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.47447 * 60.00201 * 9 7 2 27 27 H 1.08997 * 109.47449 * 299.99919 * 9 7 2 28 28 H 1.09001 * 109.45799 * 55.03110 * 10 9 7 29 29 H 1.08997 * 109.68637 * 58.70485 * 11 10 9 30 30 H 1.09002 * 109.47277 * 298.50741 * 11 10 9 31 31 H 1.09002 * 109.58720 * 294.71670 * 12 11 10 32 32 H 1.08996 * 109.58651 * 174.43567 * 12 11 10 33 33 H 1.09001 * 109.47488 * 299.99559 * 16 14 13 34 34 H 1.09001 * 109.47269 * 59.99982 * 16 14 13 35 35 H 1.08996 * 109.47074 * 299.99864 * 17 16 14 36 36 H 1.09001 * 109.47188 * 59.99897 * 17 16 14 37 37 H 1.09002 * 112.93389 * 18.43304 * 19 18 17 38 38 H 1.09007 * 113.75654 * 336.23298 * 20 19 18 39 39 H 1.08999 * 113.76249 * 107.59947 * 20 19 18 40 40 H 1.00898 * 110.99961 * 137.58126 * 21 20 19 41 41 H 1.08990 * 113.76119 * 220.99173 * 22 21 20 42 42 H 1.09010 * 113.85787 * 89.64112 * 22 21 20 43 43 H 1.08994 * 109.58580 * 173.39910 * 23 13 12 44 44 H 1.09006 * 109.57831 * 293.67403 * 23 13 12 45 45 H 1.08994 * 109.50232 * 61.43679 * 24 10 9 46 46 H 1.09007 * 109.52628 * 301.35340 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8902 2.3965 -1.2125 6 1 1.8902 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 6 3.0435 -3.6504 -1.3088 12 6 4.0596 -4.7967 -1.2881 13 7 3.3508 -6.0559 -1.0228 14 6 3.4927 -7.1112 -1.8491 15 8 4.2106 -7.0266 -2.8229 16 6 2.7594 -8.3962 -1.5629 17 6 3.0924 -9.4253 -2.6452 18 8 2.3965 -10.6437 -2.3741 19 6 2.6392 -11.6769 -3.3312 20 6 1.4022 -12.0487 -4.1685 21 7 1.8239 -13.4551 -3.9856 22 6 2.5478 -13.0976 -2.7458 23 6 2.4846 -6.1432 0.1609 24 6 1.4842 -4.9836 0.1263 25 1 -0.4851 0.8400 0.0004 26 1 0.6248 -2.5571 -0.8897 27 1 0.6241 -2.5567 0.8902 28 1 2.9291 -3.5552 0.8427 29 1 3.5686 -2.7006 -1.4103 30 1 2.3633 -3.7824 -2.1502 31 1 4.7951 -4.6190 -0.5035 32 1 4.5624 -4.8568 -2.2533 33 1 3.0658 -8.7807 -0.5901 34 1 1.6857 -8.2085 -1.5577 35 1 2.7863 -9.0412 -3.6182 36 1 4.1661 -9.6130 -2.6500 37 1 3.5369 -11.5038 -3.9247 38 1 0.4557 -11.8075 -3.6846 39 1 1.4523 -11.7060 -5.2020 40 1 1.0318 -14.0468 -3.7840 41 1 3.5132 -13.5929 -2.6425 42 1 1.9379 -13.1629 -1.8446 43 1 1.9462 -7.0909 0.1506 44 1 3.0920 -6.0779 1.0637 45 1 0.8185 -5.1029 -0.7285 46 1 0.8987 -4.9808 1.0458 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000570216545.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:30:50 Heat of formation + Delta-G solvation = -88.493422 kcal Electronic energy + Delta-G solvation = -23779.901030 eV Core-core repulsion = 20282.858838 eV Total energy + Delta-G solvation = -3497.042191 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.30274 -40.57790 -38.81601 -37.57738 -35.71863 -34.05368 -32.93007 -31.63351 -29.82269 -27.59511 -27.01341 -26.42308 -25.07579 -23.82519 -23.16366 -21.29117 -20.97125 -19.78081 -18.86423 -18.39910 -17.90474 -17.23747 -16.99765 -16.76597 -16.53104 -16.00916 -15.36423 -15.19430 -15.01780 -14.78464 -14.50860 -14.45073 -14.19438 -14.16095 -13.83591 -13.65316 -13.38917 -13.06030 -12.98721 -12.72041 -12.50427 -12.32667 -12.30753 -12.11461 -12.03207 -11.89217 -11.76261 -11.32257 -11.06019 -11.02372 -10.71030 -10.52720 -10.52525 -10.05486 -9.61770 -8.17556 -6.26317 1.39010 1.40469 1.52318 1.56944 1.87543 2.41586 2.64056 3.08724 3.16171 3.49003 3.58533 3.84094 3.96226 4.03259 4.06114 4.09817 4.14383 4.23667 4.36451 4.38171 4.43206 4.46799 4.58904 4.63683 4.70673 4.75124 4.81835 4.81994 4.85034 4.90146 4.94914 5.01238 5.01629 5.11781 5.30889 5.34605 5.38907 5.55836 5.60718 5.81485 5.90601 6.14733 6.21030 6.29633 6.42987 6.90841 7.11061 7.42229 8.94269 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.036924 B = 0.002337 C = 0.002292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.126647 B =11976.269213 C =12215.658209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.003 4.003 3 Si 0.958 3.042 4 H -0.261 1.261 5 H -0.283 1.283 6 H -0.280 1.280 7 C -0.527 4.527 8 H 0.062 0.938 9 C 0.032 3.968 10 C -0.075 4.075 11 C -0.110 4.110 12 C 0.117 3.883 13 N -0.606 5.606 14 C 0.515 3.485 15 O -0.590 6.590 16 C -0.130 4.130 17 C 0.082 3.918 18 O -0.383 6.383 19 C 0.050 3.950 20 C -0.013 4.013 21 N -0.643 5.643 22 C 0.011 3.989 23 C 0.110 3.890 24 C -0.126 4.126 25 H 0.261 0.739 26 H -0.017 1.017 27 H -0.007 1.007 28 H 0.063 0.937 29 H 0.066 0.934 30 H 0.039 0.961 31 H 0.080 0.920 32 H 0.076 0.924 33 H 0.126 0.874 34 H 0.117 0.883 35 H 0.047 0.953 36 H 0.054 0.946 37 H 0.096 0.904 38 H 0.081 0.919 39 H 0.090 0.910 40 H 0.335 0.665 41 H 0.101 0.899 42 H 0.084 0.916 43 H 0.115 0.885 44 H 0.088 0.912 45 H 0.051 0.949 46 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.762 -24.800 -1.476 25.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.201 4.201 3 Si 0.783 3.217 4 H -0.185 1.185 5 H -0.209 1.209 6 H -0.206 1.206 7 C -0.565 4.565 8 H 0.081 0.919 9 C -0.005 4.005 10 C -0.093 4.093 11 C -0.148 4.148 12 C -0.005 4.005 13 N -0.338 5.338 14 C 0.305 3.695 15 O -0.471 6.471 16 C -0.169 4.169 17 C 0.005 3.995 18 O -0.301 6.301 19 C -0.009 4.009 20 C -0.143 4.143 21 N -0.271 5.271 22 C -0.119 4.119 23 C -0.011 4.011 24 C -0.164 4.164 25 H 0.070 0.930 26 H 0.002 0.998 27 H 0.011 0.989 28 H 0.082 0.918 29 H 0.084 0.916 30 H 0.058 0.942 31 H 0.098 0.902 32 H 0.094 0.906 33 H 0.144 0.856 34 H 0.135 0.865 35 H 0.065 0.935 36 H 0.073 0.927 37 H 0.114 0.886 38 H 0.099 0.901 39 H 0.109 0.891 40 H 0.149 0.851 41 H 0.119 0.881 42 H 0.103 0.897 43 H 0.133 0.867 44 H 0.107 0.893 45 H 0.070 0.930 46 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 5.468 -24.833 -2.405 25.541 hybrid contribution -0.641 1.774 0.278 1.906 sum 4.827 -23.059 -2.127 23.655 Atomic orbital electron populations 1.70094 1.07717 1.27412 1.52387 1.25934 0.95682 1.03166 0.95283 0.85504 0.79289 0.79398 0.77504 1.18476 1.20935 1.20583 1.21714 0.93503 0.92125 1.49177 0.91946 1.19027 0.94051 0.93008 0.94403 1.21109 0.97004 0.94431 0.96782 1.21800 0.97662 0.97802 0.97573 1.21564 0.94269 0.82459 1.02223 1.48250 1.46547 1.12328 1.26704 1.20919 0.81247 0.85808 0.81575 1.90669 1.42036 1.84362 1.30067 1.21482 1.02797 0.90544 1.02123 1.22099 0.95989 0.84016 0.97412 1.87852 1.69777 1.22137 1.50357 1.24314 0.98449 0.87276 0.90816 1.24318 0.98377 0.89978 1.01616 1.66812 1.24272 1.07614 1.28370 1.24062 1.01378 0.92944 0.93536 1.22006 0.92032 0.99961 0.87119 1.21949 0.97932 0.94117 1.02432 0.93031 0.99821 0.98911 0.91837 0.91552 0.94204 0.90210 0.90573 0.85555 0.86528 0.93498 0.92732 0.88639 0.90097 0.89121 0.85076 0.88121 0.89749 0.86661 0.89338 0.92993 0.89980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.52 13.28 21.45 0.28 -56.24 16 2 C 0.00 -0.20 5.46 84.66 0.46 0.26 16 3 Si 0.96 43.99 29.54 68.60 2.03 46.02 16 4 H -0.26 -11.37 7.11 99.48 0.71 -10.66 16 5 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 6 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 7 C -0.53 -28.91 8.39 25.60 0.21 -28.70 16 8 H 0.06 3.28 7.06 -2.91 -0.02 3.26 16 9 C 0.03 1.62 4.45 29.85 0.13 1.75 16 10 C -0.07 -2.78 2.10 -10.66 -0.02 -2.81 16 11 C -0.11 -3.96 5.21 30.78 0.16 -3.80 16 12 C 0.12 3.47 6.42 86.36 0.55 4.03 16 13 N -0.61 -15.60 2.97 -818.91 -2.43 -18.04 16 14 C 0.51 13.39 7.70 87.66 0.67 14.07 16 15 O -0.59 -19.89 15.39 -3.03 -0.05 -19.93 16 16 C -0.13 -2.31 4.42 29.85 0.13 -2.17 16 17 C 0.08 1.59 5.07 71.98 0.36 1.95 16 18 O -0.38 -6.91 10.36 -148.98 -1.54 -8.46 16 19 C 0.05 0.78 4.50 31.24 0.14 0.92 16 20 C -0.01 -0.18 8.73 86.40 0.75 0.58 16 21 N -0.64 -8.63 8.53 -528.06 -4.50 -13.13 16 22 C 0.01 0.13 8.73 86.41 0.75 0.89 16 23 C 0.11 2.27 6.34 86.36 0.55 2.82 16 24 C -0.13 -3.60 5.36 30.67 0.16 -3.44 16 25 H 0.26 14.87 8.31 -92.71 -0.77 14.10 16 26 H -0.02 -0.93 8.14 -2.39 -0.02 -0.95 16 27 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 28 H 0.06 2.31 8.14 -2.39 -0.02 2.30 16 29 H 0.07 2.59 6.93 -2.39 -0.02 2.58 16 30 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 32 H 0.08 2.41 7.00 -2.39 -0.02 2.40 16 33 H 0.13 1.64 7.94 -2.39 -0.02 1.62 16 34 H 0.12 1.80 7.69 -2.39 -0.02 1.78 16 35 H 0.05 1.02 8.10 -2.39 -0.02 1.00 16 36 H 0.05 1.10 8.10 -2.39 -0.02 1.08 16 37 H 0.10 1.50 7.87 -2.39 -0.02 1.48 16 38 H 0.08 1.07 8.14 -2.38 -0.02 1.05 16 39 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 40 H 0.34 3.36 8.91 -89.70 -0.80 2.56 16 41 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 42 H 0.08 0.93 8.14 -2.38 -0.02 0.91 16 43 H 0.12 1.60 5.93 -2.39 -0.01 1.59 16 44 H 0.09 1.57 8.14 -2.38 -0.02 1.55 16 45 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 46 H 0.08 2.20 8.14 -2.38 -0.02 2.18 16 Total: -1.00 -69.51 365.85 -1.03 -70.54 By element: Atomic # 1 Polarization: 12.74 SS G_CDS: 0.15 Total: 12.89 kcal Atomic # 6 Polarization: -18.69 SS G_CDS: 5.04 Total: -13.66 kcal Atomic # 7 Polarization: -80.75 SS G_CDS: -6.65 Total: -87.40 kcal Atomic # 8 Polarization: -26.80 SS G_CDS: -1.59 Total: -28.39 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.02 kcal Total: -69.51 -1.03 -70.54 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000570216545.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.955 kcal (2) G-P(sol) polarization free energy of solvation -69.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds