Wall clock time and date at job start Tue Mar 31 2020 03:30:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86801 * 120.00022 * 2 1 4 4 H 1.48503 * 109.47337 * 240.00284 * 3 2 1 5 5 H 1.48507 * 109.46868 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47381 * 119.99959 * 3 2 1 7 7 C 1.37872 * 119.99956 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99886 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00070 * 359.97438 * 7 2 1 10 10 C 1.53008 * 109.47187 * 180.02562 * 9 7 2 11 11 C 1.53042 * 109.45525 * 185.00021 * 10 9 7 12 12 C 1.53200 * 109.30682 * 178.61365 * 11 10 9 13 13 N 1.46928 * 108.77634 * 54.63435 * 12 11 10 14 14 C 1.34778 * 120.63090 * 126.36413 * 13 12 11 15 15 O 1.21280 * 119.99941 * 0.02562 * 14 13 12 16 16 C 1.50697 * 119.99846 * 180.02562 * 14 13 12 17 17 C 1.53004 * 109.46884 * 180.02562 * 16 14 13 18 18 H 1.09000 * 109.53994 * 55.10632 * 17 16 14 19 19 C 1.53100 * 109.50381 * 175.21507 * 17 16 14 20 20 N 1.47024 * 109.25427 * 176.78191 * 19 17 16 21 21 C 1.47016 * 110.74959 * 301.38569 * 20 19 17 22 22 C 1.53096 * 109.25942 * 58.61828 * 21 20 19 23 23 O 1.43014 * 109.50432 * 294.99720 * 17 16 14 24 24 C 1.46928 * 118.73739 * 306.64604 * 13 12 11 25 25 C 1.52759 * 109.01224 * 53.30595 * 24 13 12 26 26 H 0.97001 * 119.99255 * 359.97438 * 1 2 3 27 27 H 1.08998 * 109.47209 * 60.00272 * 9 7 2 28 28 H 1.09007 * 109.47104 * 299.99909 * 9 7 2 29 29 H 1.08992 * 109.44727 * 304.96498 * 10 9 7 30 30 H 1.08999 * 109.50040 * 58.66347 * 11 10 9 31 31 H 1.09003 * 109.49943 * 298.55825 * 11 10 9 32 32 H 1.09001 * 109.58575 * 294.84808 * 12 11 10 33 33 H 1.09003 * 109.70180 * 174.48933 * 12 11 10 34 34 H 1.08997 * 109.47390 * 60.00439 * 16 14 13 35 35 H 1.09001 * 109.47262 * 300.00129 * 16 14 13 36 36 H 1.08993 * 109.50999 * 296.71211 * 19 17 16 37 37 H 1.09002 * 109.50770 * 56.80852 * 19 17 16 38 38 H 1.00894 * 110.99423 * 177.60794 * 20 19 17 39 39 H 1.08999 * 109.50851 * 298.67504 * 21 20 19 40 40 H 1.09004 * 109.50278 * 178.55268 * 21 20 19 41 41 H 1.09001 * 109.50680 * 63.08252 * 22 21 20 42 42 H 1.09007 * 109.50443 * 183.16669 * 22 21 20 43 43 H 1.09000 * 109.58388 * 173.14505 * 24 13 12 44 44 H 1.08996 * 109.58207 * 293.56399 * 24 13 12 45 45 H 1.08999 * 109.56573 * 185.55413 * 25 24 13 46 46 H 1.09005 * 109.35888 * 65.49722 * 25 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6965 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1030 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 6 1.4840 -4.9837 -0.1263 12 6 2.4845 -6.1433 -0.1608 13 7 3.3506 -6.0561 1.0228 14 6 3.4917 -7.1110 1.8497 15 8 2.9011 -8.1450 1.6197 16 6 4.3833 -7.0056 3.0601 17 6 4.3671 -8.3322 3.8224 18 1 4.6457 -9.1429 3.1492 19 6 5.3629 -8.2666 4.9834 20 7 5.2874 -9.5141 5.7579 21 6 3.9266 -9.7263 6.2722 22 6 2.9453 -9.7771 5.0982 23 8 3.0550 -8.5700 4.3391 24 6 4.0550 -4.7950 1.2913 25 6 3.0414 -3.6522 1.3065 26 1 -0.4849 0.8401 0.0004 27 1 0.6241 -2.5566 -0.8903 28 1 0.6248 -2.5570 0.8897 29 1 2.9289 -3.5551 -0.8428 30 1 0.8989 -4.9804 -1.0460 31 1 0.8183 -5.1028 0.7286 32 1 3.0915 -6.0754 -1.0636 33 1 1.9478 -7.0921 -0.1518 34 1 4.0215 -6.2086 3.7096 35 1 5.4017 -6.7817 2.7427 36 1 6.3721 -8.1426 4.5909 37 1 5.1164 -7.4223 5.6272 38 1 5.9619 -9.5151 6.5083 39 1 3.6566 -8.9058 6.9370 40 1 3.8874 -10.6676 6.8204 41 1 3.1826 -10.6299 4.4621 42 1 1.9285 -9.8780 5.4779 43 1 4.5524 -4.8533 2.2594 44 1 4.7927 -4.6150 0.5094 45 1 3.5647 -2.7014 1.4066 46 1 2.3609 -3.7840 2.1478 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000583025655.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:30:48 Heat of formation + Delta-G solvation = -95.079725 kcal Electronic energy + Delta-G solvation = -24630.797943 eV Core-core repulsion = 21133.470148 eV Total energy + Delta-G solvation = -3497.327795 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.25877 -39.24220 -37.24070 -34.78755 -33.97231 -33.15593 -32.07567 -30.81069 -28.92697 -27.87529 -25.95537 -24.53417 -23.34857 -22.71106 -21.62478 -20.63460 -19.75122 -18.55981 -17.15470 -16.83988 -16.66949 -16.28583 -15.75262 -15.06454 -14.97099 -14.71708 -14.55241 -14.43804 -14.05746 -13.68252 -13.57198 -13.18148 -12.95610 -12.76439 -12.53528 -12.20692 -12.05657 -11.80034 -11.65531 -11.40616 -11.17412 -10.99040 -10.80429 -10.69565 -10.66247 -10.45609 -10.11187 -9.84377 -9.70989 -9.49085 -9.24512 -8.97482 -8.87061 -8.36044 -8.28308 -6.00323 -4.02578 2.82924 3.17003 3.30974 3.36429 3.37619 3.60582 3.75835 4.43060 4.44248 4.65549 4.72127 4.81460 4.91153 5.01356 5.10438 5.19966 5.21055 5.33027 5.34487 5.37141 5.46066 5.51368 5.54362 5.59051 5.68831 5.72444 5.80908 5.85338 6.02304 6.11478 6.40491 6.41654 6.45436 6.54645 6.72747 6.85888 6.98117 7.00887 7.09618 7.11721 7.64394 7.66824 7.81988 7.99600 8.39349 8.41635 9.03866 9.61118 11.10925 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.024881 B = 0.002965 C = 0.002838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.088895 B = 9439.954449 C = 9864.337485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.056 3.944 3 Si 0.889 3.111 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.517 4.517 8 H 0.055 0.945 9 C 0.028 3.972 10 C -0.080 4.080 11 C -0.129 4.129 12 C 0.113 3.887 13 N -0.608 5.608 14 C 0.517 3.483 15 O -0.539 6.539 16 C -0.135 4.135 17 C 0.110 3.890 18 H 0.073 0.927 19 C 0.024 3.976 20 N -0.688 5.688 21 C 0.018 3.982 22 C 0.065 3.935 23 O -0.367 6.367 24 C 0.104 3.896 25 C -0.120 4.120 26 H 0.260 0.740 27 H 0.016 0.984 28 H 0.015 0.985 29 H 0.058 0.942 30 H 0.069 0.931 31 H 0.060 0.940 32 H 0.062 0.938 33 H 0.084 0.916 34 H 0.102 0.898 35 H 0.106 0.894 36 H 0.087 0.913 37 H 0.042 0.958 38 H 0.346 0.654 39 H 0.040 0.960 40 H 0.084 0.916 41 H 0.058 0.942 42 H 0.096 0.904 43 H 0.076 0.924 44 H 0.066 0.934 45 H 0.084 0.916 46 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.507 -16.948 10.094 22.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.145 4.145 3 Si 0.717 3.283 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.555 4.555 8 H 0.073 0.927 9 C -0.009 4.009 10 C -0.099 4.099 11 C -0.168 4.168 12 C -0.009 4.009 13 N -0.342 5.342 14 C 0.305 3.695 15 O -0.416 6.416 16 C -0.176 4.176 17 C 0.052 3.948 18 H 0.091 0.909 19 C -0.106 4.106 20 N -0.320 5.320 21 C -0.112 4.112 22 C -0.013 4.013 23 O -0.285 6.285 24 C -0.019 4.019 25 C -0.158 4.158 26 H 0.070 0.930 27 H 0.034 0.966 28 H 0.033 0.967 29 H 0.076 0.924 30 H 0.088 0.912 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.103 0.897 34 H 0.120 0.880 35 H 0.125 0.875 36 H 0.105 0.895 37 H 0.061 0.939 38 H 0.163 0.837 39 H 0.058 0.942 40 H 0.103 0.897 41 H 0.076 0.924 42 H 0.114 0.886 43 H 0.094 0.906 44 H 0.084 0.916 45 H 0.103 0.897 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 10.783 -17.651 9.380 22.712 hybrid contribution 0.624 1.687 0.861 1.994 sum 11.407 -15.964 10.241 22.133 Atomic orbital electron populations 1.69959 1.06060 1.26645 1.50806 1.25028 0.94801 0.99174 0.95478 0.86706 0.79606 0.83409 0.78538 1.20306 1.21376 1.20287 1.21199 0.92867 0.90980 1.50479 0.92659 1.19121 0.93619 0.90997 0.97194 1.21180 0.97972 0.94685 0.96030 1.22024 0.97681 0.94848 1.02202 1.21634 0.92560 1.00237 0.86471 1.48173 1.47038 1.12784 1.26216 1.20323 0.82281 0.83269 0.83632 1.90677 1.47848 1.29290 1.73781 1.21725 1.01124 0.98725 0.95986 1.21793 0.83040 0.96748 0.93256 0.90859 1.22659 1.00665 0.90943 0.96324 1.60507 1.06135 1.36393 1.28949 1.22666 0.89590 1.01541 0.97373 1.22591 0.98915 0.88093 0.91663 1.88083 1.29045 1.41407 1.69962 1.21841 0.95278 0.83828 1.00933 1.21831 0.97684 0.97154 0.99166 0.92983 0.96611 0.96658 0.92384 0.91219 0.92096 0.91998 0.89742 0.88009 0.87546 0.89506 0.93949 0.83657 0.94195 0.89727 0.92373 0.88587 0.90598 0.91557 0.89708 0.92296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.62 13.29 55.43 0.74 -25.88 16 2 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 3 Si 0.89 21.16 29.54 -169.99 -5.02 16.14 16 4 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 7 C -0.52 -13.95 8.39 -34.44 -0.29 -14.24 16 8 H 0.06 1.42 7.06 -52.49 -0.37 1.05 16 9 C 0.03 0.69 4.45 -27.88 -0.12 0.57 16 10 C -0.08 -1.55 2.10 -90.58 -0.19 -1.74 16 11 C -0.13 -2.23 5.36 -26.61 -0.14 -2.38 16 12 C 0.11 1.74 6.44 -3.71 -0.02 1.72 16 13 N -0.61 -8.99 2.98 -173.02 -0.52 -9.50 16 14 C 0.52 7.80 7.58 -10.99 -0.08 7.72 16 15 O -0.54 -9.97 14.84 -8.82 -0.13 -10.10 16 16 C -0.14 -1.49 3.76 -27.88 -0.10 -1.60 16 17 C 0.11 1.28 2.35 -26.68 -0.06 1.21 16 18 H 0.07 0.95 7.96 -51.93 -0.41 0.54 16 19 C 0.02 0.21 6.05 -3.70 -0.02 0.18 16 20 N -0.69 -5.73 6.92 -113.49 -0.79 -6.52 16 21 C 0.02 0.15 6.76 -3.71 -0.03 0.12 16 22 C 0.06 0.68 7.01 37.21 0.26 0.94 16 23 O -0.37 -5.06 9.70 -49.61 -0.48 -5.54 16 24 C 0.10 1.37 6.31 -3.93 -0.02 1.35 16 25 C -0.12 -2.05 5.17 -26.84 -0.14 -2.18 16 26 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 27 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 30 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 31 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 33 H 0.08 1.36 7.00 -51.93 -0.36 1.00 16 34 H 0.10 1.08 7.68 -51.93 -0.40 0.68 16 35 H 0.11 0.85 7.95 -51.93 -0.41 0.44 16 36 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.35 2.12 8.90 -39.30 -0.35 1.77 16 39 H 0.04 0.34 8.14 -51.93 -0.42 -0.09 16 40 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.08 0.80 5.93 -51.93 -0.31 0.49 16 44 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 45 H 0.08 1.52 6.91 -51.93 -0.36 1.16 16 46 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 LS Contribution 357.47 15.07 5.39 5.39 Total: -1.00 -32.97 357.47 -9.91 -42.88 By element: Atomic # 1 Polarization: 8.01 SS G_CDS: -8.03 Total: -0.02 kcal Atomic # 6 Polarization: -5.78 SS G_CDS: -1.07 Total: -6.84 kcal Atomic # 7 Polarization: -41.34 SS G_CDS: -0.56 Total: -41.90 kcal Atomic # 8 Polarization: -15.03 SS G_CDS: -0.61 Total: -15.64 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -32.97 -9.91 -42.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000583025655.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.200 kcal (2) G-P(sol) polarization free energy of solvation -32.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds