Wall clock time and date at job start Tue Mar 31 2020 03:30:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86801 * 120.00022 * 2 1 4 4 H 1.48503 * 109.47337 * 240.00284 * 3 2 1 5 5 H 1.48507 * 109.46868 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47381 * 119.99959 * 3 2 1 7 7 C 1.37872 * 119.99956 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99886 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00070 * 359.97438 * 7 2 1 10 10 C 1.53008 * 109.47187 * 180.02562 * 9 7 2 11 11 C 1.53042 * 109.45525 * 185.00021 * 10 9 7 12 12 C 1.53200 * 109.30682 * 178.61365 * 11 10 9 13 13 N 1.46928 * 108.77634 * 54.63435 * 12 11 10 14 14 C 1.34778 * 120.63090 * 126.36413 * 13 12 11 15 15 O 1.21280 * 119.99941 * 0.02562 * 14 13 12 16 16 C 1.50697 * 119.99846 * 180.02562 * 14 13 12 17 17 C 1.53004 * 109.46884 * 180.02562 * 16 14 13 18 18 H 1.09000 * 109.53994 * 55.10632 * 17 16 14 19 19 C 1.53100 * 109.50381 * 175.21507 * 17 16 14 20 20 N 1.47024 * 109.25427 * 176.78191 * 19 17 16 21 21 C 1.47016 * 110.74959 * 301.38569 * 20 19 17 22 22 C 1.53096 * 109.25942 * 58.61828 * 21 20 19 23 23 O 1.43014 * 109.50432 * 294.99720 * 17 16 14 24 24 C 1.46928 * 118.73739 * 306.64604 * 13 12 11 25 25 C 1.52759 * 109.01224 * 53.30595 * 24 13 12 26 26 H 0.97001 * 119.99255 * 359.97438 * 1 2 3 27 27 H 1.08998 * 109.47209 * 60.00272 * 9 7 2 28 28 H 1.09007 * 109.47104 * 299.99909 * 9 7 2 29 29 H 1.08992 * 109.44727 * 304.96498 * 10 9 7 30 30 H 1.08999 * 109.50040 * 58.66347 * 11 10 9 31 31 H 1.09003 * 109.49943 * 298.55825 * 11 10 9 32 32 H 1.09001 * 109.58575 * 294.84808 * 12 11 10 33 33 H 1.09003 * 109.70180 * 174.48933 * 12 11 10 34 34 H 1.08997 * 109.47390 * 60.00439 * 16 14 13 35 35 H 1.09001 * 109.47262 * 300.00129 * 16 14 13 36 36 H 1.08993 * 109.50999 * 296.71211 * 19 17 16 37 37 H 1.09002 * 109.50770 * 56.80852 * 19 17 16 38 38 H 1.00894 * 110.99423 * 177.60794 * 20 19 17 39 39 H 1.08999 * 109.50851 * 298.67504 * 21 20 19 40 40 H 1.09004 * 109.50278 * 178.55268 * 21 20 19 41 41 H 1.09001 * 109.50680 * 63.08252 * 22 21 20 42 42 H 1.09007 * 109.50443 * 183.16669 * 22 21 20 43 43 H 1.09000 * 109.58388 * 173.14505 * 24 13 12 44 44 H 1.08996 * 109.58207 * 293.56399 * 24 13 12 45 45 H 1.08999 * 109.56573 * 185.55413 * 25 24 13 46 46 H 1.09005 * 109.35888 * 65.49722 * 25 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6965 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1030 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 6 1.4840 -4.9837 -0.1263 12 6 2.4845 -6.1433 -0.1608 13 7 3.3506 -6.0561 1.0228 14 6 3.4917 -7.1110 1.8497 15 8 2.9011 -8.1450 1.6197 16 6 4.3833 -7.0056 3.0601 17 6 4.3671 -8.3322 3.8224 18 1 4.6457 -9.1429 3.1492 19 6 5.3629 -8.2666 4.9834 20 7 5.2874 -9.5141 5.7579 21 6 3.9266 -9.7263 6.2722 22 6 2.9453 -9.7771 5.0982 23 8 3.0550 -8.5700 4.3391 24 6 4.0550 -4.7950 1.2913 25 6 3.0414 -3.6522 1.3065 26 1 -0.4849 0.8401 0.0004 27 1 0.6241 -2.5566 -0.8903 28 1 0.6248 -2.5570 0.8897 29 1 2.9289 -3.5551 -0.8428 30 1 0.8989 -4.9804 -1.0460 31 1 0.8183 -5.1028 0.7286 32 1 3.0915 -6.0754 -1.0636 33 1 1.9478 -7.0921 -0.1518 34 1 4.0215 -6.2086 3.7096 35 1 5.4017 -6.7817 2.7427 36 1 6.3721 -8.1426 4.5909 37 1 5.1164 -7.4223 5.6272 38 1 5.9619 -9.5151 6.5083 39 1 3.6566 -8.9058 6.9370 40 1 3.8874 -10.6676 6.8204 41 1 3.1826 -10.6299 4.4621 42 1 1.9285 -9.8780 5.4779 43 1 4.5524 -4.8533 2.2594 44 1 4.7927 -4.6150 0.5094 45 1 3.5647 -2.7014 1.4066 46 1 2.3609 -3.7840 2.1478 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000583025655.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:30:48 Heat of formation + Delta-G solvation = -117.805337 kcal Electronic energy + Delta-G solvation = -24631.783400 eV Core-core repulsion = 21133.470148 eV Total energy + Delta-G solvation = -3498.313251 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.34917 -40.18159 -38.60179 -35.67577 -35.51644 -34.24479 -33.71700 -32.06680 -30.09624 -29.32008 -26.93356 -26.03492 -24.37986 -23.98861 -23.11437 -21.47685 -21.12474 -19.82439 -18.40520 -18.10159 -17.71753 -17.56895 -16.86322 -16.52086 -16.09609 -15.80639 -15.52965 -15.31609 -15.21460 -14.95773 -14.78464 -14.54207 -14.24834 -14.21514 -13.81931 -13.44451 -13.29797 -12.94017 -12.86194 -12.72306 -12.47401 -12.37475 -12.31906 -12.22741 -12.07620 -11.75978 -11.52804 -11.32998 -11.09445 -10.84218 -10.75712 -10.58141 -10.50058 -9.55168 -9.50111 -8.14961 -6.25033 1.42900 1.45575 1.52967 1.69448 2.07107 2.44171 2.80701 3.13790 3.18726 3.51702 3.84833 3.92064 3.99339 4.05289 4.07403 4.15181 4.19336 4.24486 4.29900 4.43130 4.46355 4.52289 4.56064 4.66420 4.69070 4.72025 4.83854 4.84864 4.90755 4.96134 4.98455 5.05391 5.12625 5.32690 5.34872 5.42570 5.56035 5.63660 5.82141 5.83393 5.90547 6.26834 6.29686 6.38082 6.51367 6.92043 7.24481 7.43976 8.97052 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.024881 B = 0.002965 C = 0.002838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.088895 B = 9439.954449 C = 9864.337485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C -0.006 4.006 3 Si 0.962 3.038 4 H -0.266 1.266 5 H -0.291 1.291 6 H -0.263 1.263 7 C -0.526 4.526 8 H 0.070 0.930 9 C 0.032 3.968 10 C -0.072 4.072 11 C -0.122 4.122 12 C 0.119 3.881 13 N -0.611 5.611 14 C 0.511 3.489 15 O -0.581 6.581 16 C -0.129 4.129 17 C 0.106 3.894 18 H 0.052 0.948 19 C 0.030 3.970 20 N -0.696 5.696 21 C 0.024 3.976 22 C 0.057 3.943 23 O -0.400 6.400 24 C 0.111 3.889 25 C -0.116 4.116 26 H 0.260 0.740 27 H -0.017 1.017 28 H -0.018 1.018 29 H 0.065 0.935 30 H 0.068 0.932 31 H 0.040 0.960 32 H 0.082 0.918 33 H 0.074 0.926 34 H 0.112 0.888 35 H 0.146 0.854 36 H 0.110 0.890 37 H 0.047 0.953 38 H 0.360 0.640 39 H 0.040 0.960 40 H 0.104 0.896 41 H 0.047 0.953 42 H 0.103 0.897 43 H 0.113 0.887 44 H 0.088 0.912 45 H 0.079 0.921 46 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.933 -16.725 11.127 25.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.203 4.203 3 Si 0.787 3.213 4 H -0.191 1.191 5 H -0.217 1.217 6 H -0.187 1.187 7 C -0.564 4.564 8 H 0.088 0.912 9 C -0.005 4.005 10 C -0.091 4.091 11 C -0.160 4.160 12 C -0.003 4.003 13 N -0.344 5.344 14 C 0.300 3.700 15 O -0.461 6.461 16 C -0.169 4.169 17 C 0.047 3.953 18 H 0.070 0.930 19 C -0.099 4.099 20 N -0.330 5.330 21 C -0.105 4.105 22 C -0.020 4.020 23 O -0.320 6.320 24 C -0.010 4.010 25 C -0.154 4.154 26 H 0.069 0.931 27 H 0.002 0.998 28 H 0.000 1.000 29 H 0.083 0.917 30 H 0.087 0.913 31 H 0.059 0.941 32 H 0.100 0.900 33 H 0.093 0.907 34 H 0.130 0.870 35 H 0.164 0.836 36 H 0.128 0.872 37 H 0.065 0.935 38 H 0.180 0.820 39 H 0.059 0.941 40 H 0.122 0.878 41 H 0.065 0.935 42 H 0.121 0.879 43 H 0.131 0.869 44 H 0.106 0.894 45 H 0.098 0.902 46 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 14.248 -17.431 10.428 24.811 hybrid contribution -0.541 1.575 0.509 1.742 sum 13.707 -15.856 10.938 23.641 Atomic orbital electron populations 1.70125 1.08041 1.27565 1.52345 1.26012 0.95630 1.03448 0.95167 0.85542 0.78210 0.78212 0.79335 1.19113 1.21676 1.18742 1.21648 0.93720 0.91664 1.49365 0.91157 1.19023 0.94081 0.93380 0.94004 1.21032 0.97023 0.93113 0.97932 1.21906 0.97847 0.94939 1.01328 1.21492 0.92488 0.98415 0.87927 1.48291 1.46819 1.13434 1.25863 1.21090 0.82121 0.82500 0.84251 1.90661 1.49615 1.30952 1.74829 1.21825 1.02236 0.98840 0.93965 1.21892 0.83005 0.96247 0.94114 0.92996 1.22601 1.00801 0.91189 0.95330 1.60479 1.06391 1.36403 1.29704 1.22596 0.89111 1.02579 0.96228 1.22747 1.00260 0.86818 0.92188 1.88032 1.30736 1.42539 1.70652 1.21912 0.94062 0.81178 1.03886 1.21731 0.98006 0.98863 0.96807 0.93094 0.99841 1.00006 0.91666 0.91330 0.94082 0.90016 0.90736 0.87008 0.83610 0.87212 0.93476 0.81992 0.94141 0.87826 0.93488 0.87935 0.86921 0.89384 0.90245 0.93970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.43 13.29 21.45 0.28 -57.14 16 2 C -0.01 -0.32 5.46 84.65 0.46 0.14 16 3 Si 0.96 43.15 29.54 68.60 2.03 45.18 16 4 H -0.27 -11.39 7.11 99.48 0.71 -10.69 16 5 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 6 H -0.26 -11.10 7.11 99.48 0.71 -10.39 16 7 C -0.53 -28.53 8.39 25.60 0.21 -28.31 16 8 H 0.07 3.53 7.06 -2.91 -0.02 3.50 16 9 C 0.03 1.66 4.45 29.85 0.13 1.80 16 10 C -0.07 -2.80 2.10 -10.76 -0.02 -2.82 16 11 C -0.12 -4.29 5.36 30.68 0.16 -4.12 16 12 C 0.12 3.59 6.44 86.36 0.56 4.14 16 13 N -0.61 -16.88 2.98 -819.72 -2.44 -19.32 16 14 C 0.51 14.66 7.58 87.66 0.66 15.33 16 15 O -0.58 -21.57 14.84 10.72 0.16 -21.41 16 16 C -0.13 -2.48 3.76 29.85 0.11 -2.37 16 17 C 0.11 2.28 2.35 30.63 0.07 2.36 16 18 H 0.05 1.32 7.96 -2.39 -0.02 1.30 16 19 C 0.03 0.44 6.05 86.31 0.52 0.96 16 20 N -0.70 -9.94 6.92 -512.96 -3.55 -13.49 16 21 C 0.02 0.36 6.76 86.31 0.58 0.95 16 22 C 0.06 1.18 7.01 72.01 0.50 1.69 16 23 O -0.40 -10.94 9.70 -135.23 -1.31 -12.26 16 24 C 0.11 2.57 6.31 86.22 0.54 3.11 16 25 C -0.12 -3.79 5.17 30.53 0.16 -3.63 16 26 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 27 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 28 H -0.02 -1.07 8.14 -2.38 -0.02 -1.08 16 29 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 30 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 31 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 32 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 33 H 0.07 2.42 7.00 -2.39 -0.02 2.40 16 34 H 0.11 1.99 7.68 -2.39 -0.02 1.97 16 35 H 0.15 1.63 7.95 -2.39 -0.02 1.61 16 36 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 38 H 0.36 3.37 8.90 -89.70 -0.80 2.58 16 39 H 0.04 0.60 8.14 -2.39 -0.02 0.59 16 40 H 0.10 1.12 8.14 -2.38 -0.02 1.10 16 41 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 42 H 0.10 1.87 8.14 -2.38 -0.02 1.85 16 43 H 0.11 1.82 5.93 -2.39 -0.01 1.81 16 44 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 45 H 0.08 2.69 6.91 -2.39 -0.02 2.68 16 46 H 0.04 1.50 8.14 -2.38 -0.02 1.48 16 Total: -1.00 -74.65 357.47 -0.01 -74.66 By element: Atomic # 1 Polarization: 14.41 SS G_CDS: 0.16 Total: 14.57 kcal Atomic # 6 Polarization: -15.45 SS G_CDS: 4.67 Total: -10.78 kcal Atomic # 7 Polarization: -84.25 SS G_CDS: -5.71 Total: -89.96 kcal Atomic # 8 Polarization: -32.52 SS G_CDS: -1.15 Total: -33.67 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.18 kcal Total: -74.65 -0.01 -74.66 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000583025655.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.142 kcal (2) G-P(sol) polarization free energy of solvation -74.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds