Wall clock time and date at job start Tue Mar 31 2020 03:40:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.42903 * 114.00026 * 2 1 4 4 C 1.52998 * 109.46967 * 52.14629 * 3 2 1 5 5 C 1.50698 * 109.47472 * 172.14834 * 3 2 1 6 6 O 1.21279 * 120.00336 * 145.00121 * 5 3 2 7 7 N 1.34775 * 119.99969 * 324.99498 * 5 3 2 8 8 C 1.46496 * 119.99999 * 180.02562 * 7 5 3 9 9 C 1.53040 * 109.46247 * 275.06997 * 8 7 5 10 10 C 1.53189 * 109.31521 * 178.61514 * 9 8 7 11 11 N 1.46929 * 108.77618 * 54.63534 * 10 9 8 12 12 C 1.36934 * 120.63044 * 126.40864 * 11 10 9 13 13 H 1.08000 * 120.00540 * 327.25757 * 12 11 10 14 14 C 1.38813 * 119.99827 * 147.25303 * 12 11 10 15 15 N 1.31620 * 120.00036 * 347.14726 * 14 12 11 16 16 Si 1.86797 * 120.00160 * 167.15177 * 14 12 11 17 17 H 1.48500 * 109.47592 * 89.99745 * 16 14 12 18 18 H 1.48497 * 109.47390 * 210.00033 * 16 14 12 19 19 H 1.48501 * 109.47270 * 329.99853 * 16 14 12 20 20 C 1.46924 * 118.73845 * 306.39802 * 11 10 9 21 21 C 1.53045 * 109.45915 * 155.00421 * 8 7 5 22 22 C 1.53002 * 109.47091 * 292.14737 * 3 2 1 23 23 C 1.53008 * 117.49535 * 355.58504 * 22 3 2 24 24 C 1.53002 * 117.49690 * 64.24170 * 22 3 2 25 25 H 1.08992 * 109.47790 * 309.55258 * 1 2 3 26 26 H 1.09004 * 109.47582 * 69.55516 * 1 2 3 27 27 H 1.09009 * 109.46947 * 189.55137 * 1 2 3 28 28 H 1.09009 * 109.47090 * 299.99997 * 4 3 2 29 29 H 1.08994 * 109.47545 * 60.00382 * 4 3 2 30 30 H 1.08999 * 109.46955 * 180.02562 * 4 3 2 31 31 H 0.97003 * 119.99874 * 0.02562 * 7 5 3 32 32 H 1.08994 * 109.46344 * 35.02937 * 8 7 5 33 33 H 1.09009 * 109.49864 * 298.56673 * 9 8 7 34 34 H 1.08998 * 109.49652 * 58.66478 * 9 8 7 35 35 H 1.08994 * 109.58990 * 294.85086 * 10 9 8 36 36 H 1.09005 * 109.70748 * 174.49103 * 10 9 8 37 37 H 0.96999 * 119.99885 * 179.97438 * 15 14 12 38 38 H 1.09009 * 109.58287 * 293.81489 * 20 11 10 39 39 H 1.09003 * 109.70274 * 173.46614 * 20 11 10 40 40 H 1.09003 * 109.49754 * 301.33685 * 21 8 7 41 41 H 1.09004 * 109.49536 * 61.43616 * 21 8 7 42 42 H 1.08996 * 115.55501 * 209.91437 * 22 3 2 43 43 H 1.09006 * 117.49397 * 215.00444 * 23 22 3 44 44 H 1.08990 * 117.49814 * 0.02562 * 23 22 3 45 45 H 1.09003 * 117.49942 * 359.97438 * 24 22 3 46 46 H 1.08996 * 117.49928 * 145.00003 * 24 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.4089 2.1314 1.1390 5 6 3.5003 1.1920 0.1941 6 8 4.2454 1.9694 -0.3637 7 7 4.0049 0.2266 0.9877 8 6 5.4534 0.1166 1.1768 9 6 6.0554 -0.7078 0.0366 10 6 7.5741 -0.7915 0.2189 11 7 7.8611 -1.3174 1.5605 12 6 8.6759 -2.4057 1.7237 13 1 8.6943 -3.1838 0.9749 14 6 9.4785 -2.5090 2.8516 15 7 9.6528 -1.4644 3.6331 16 14 10.3112 -4.1304 3.2602 17 1 11.6457 -4.1791 2.6108 18 1 10.4723 -4.2472 4.7318 19 1 9.4775 -5.2542 2.7629 20 6 7.2575 -0.6530 2.7237 21 6 5.7423 -0.5708 2.5133 22 6 1.7208 1.9926 -1.3361 23 6 1.0013 1.1741 -2.4101 24 6 0.2591 2.2925 -1.6742 25 1 -0.3634 0.6543 0.7923 26 1 -0.3634 0.3590 -0.9629 27 1 -0.3633 -1.0135 0.1705 28 1 0.3310 2.2135 0.9985 29 1 1.6151 1.6420 2.0908 30 1 1.8519 3.1273 1.1387 31 1 3.4089 -0.3954 1.4337 32 1 5.8962 1.1125 1.1775 33 1 5.6314 -1.7120 0.0505 34 1 5.8292 -0.2300 -0.9166 35 1 8.0099 0.2020 0.1150 36 1 7.9984 -1.4571 -0.5329 37 1 10.2133 -1.5367 4.4215 38 1 7.6675 0.3520 2.8240 39 1 7.4706 -1.2263 3.6259 40 1 5.2933 0.0045 3.3230 41 1 5.3213 -1.5762 2.5038 42 1 2.4715 2.7095 -1.6684 43 1 1.2789 1.3526 -3.4490 44 1 0.7338 0.1464 -2.1647 45 1 -0.4965 1.9998 -0.9451 46 1 0.0482 3.2067 -2.2290 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000589699491.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:40:06 Heat of formation + Delta-G solvation = -42.408624 kcal Electronic energy + Delta-G solvation = -25261.848350 eV Core-core repulsion = 21766.804545 eV Total energy + Delta-G solvation = -3495.043805 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.82692 -40.11576 -38.78497 -36.58614 -35.90383 -33.94707 -32.52572 -31.73650 -30.99722 -28.56350 -26.95985 -25.14284 -24.05839 -23.79757 -23.19617 -22.18113 -21.21728 -20.67461 -19.19209 -18.47335 -17.82888 -17.04928 -16.80143 -16.69743 -16.00575 -15.73369 -15.41981 -15.33014 -15.12023 -14.81658 -14.45505 -14.22118 -14.15230 -14.10741 -13.56356 -13.24424 -13.18008 -13.00104 -12.87141 -12.66118 -12.53849 -12.33882 -12.24327 -12.03707 -11.91180 -11.84950 -11.60105 -11.39220 -11.38477 -11.17617 -10.67122 -10.58077 -10.51687 -10.02965 -8.65065 -7.88784 -5.40458 1.43437 1.48260 1.48697 1.59149 2.09572 2.50928 2.63440 2.92069 3.28130 3.56814 3.58265 3.67363 3.83420 3.87353 4.03038 4.03958 4.18654 4.30377 4.35771 4.43855 4.46672 4.55729 4.62380 4.65957 4.69028 4.76295 4.79843 4.83634 4.86649 4.99905 5.02544 5.08130 5.12491 5.13450 5.18621 5.23645 5.27515 5.43619 5.51971 5.64120 5.68051 6.03918 6.40361 6.56520 7.14459 7.19306 7.81466 8.37445 9.18222 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.033800 B = 0.003216 C = 0.003198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 828.205983 B = 8705.550698 C = 8754.496257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.010 4.010 2 O -0.384 6.384 3 C 0.139 3.861 4 C -0.171 4.171 5 C 0.528 3.472 6 O -0.575 6.575 7 N -0.699 5.699 8 C 0.160 3.840 9 C -0.123 4.123 10 C 0.146 3.854 11 N -0.609 5.609 12 C -0.269 4.269 13 H 0.064 0.936 14 C -0.045 4.045 15 N -0.934 5.934 16 Si 0.971 3.029 17 H -0.285 1.285 18 H -0.290 1.290 19 H -0.268 1.268 20 C 0.183 3.817 21 C -0.128 4.128 22 C -0.192 4.192 23 C -0.179 4.179 24 C -0.159 4.159 25 H 0.068 0.932 26 H 0.074 0.926 27 H 0.100 0.900 28 H 0.102 0.898 29 H 0.075 0.925 30 H 0.070 0.930 31 H 0.414 0.586 32 H 0.059 0.941 33 H 0.064 0.936 34 H 0.056 0.944 35 H 0.007 0.993 36 H 0.057 0.943 37 H 0.252 0.748 38 H -0.004 1.004 39 H 0.059 0.941 40 H 0.078 0.922 41 H 0.068 0.932 42 H 0.099 0.901 43 H 0.095 0.905 44 H 0.111 0.889 45 H 0.122 0.878 46 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.421 4.960 -6.079 25.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 O -0.304 6.304 3 C 0.096 3.904 4 C -0.229 4.229 5 C 0.315 3.685 6 O -0.455 6.455 7 N -0.349 5.349 8 C 0.055 3.945 9 C -0.163 4.163 10 C 0.020 3.980 11 N -0.332 5.332 12 C -0.399 4.399 13 H 0.082 0.918 14 C -0.241 4.241 15 N -0.580 5.580 16 Si 0.799 3.201 17 H -0.212 1.212 18 H -0.216 1.216 19 H -0.193 1.193 20 C 0.057 3.943 21 C -0.168 4.168 22 C -0.211 4.211 23 C -0.216 4.216 24 C -0.196 4.196 25 H 0.086 0.914 26 H 0.092 0.908 27 H 0.118 0.882 28 H 0.121 0.879 29 H 0.094 0.906 30 H 0.089 0.911 31 H 0.251 0.749 32 H 0.077 0.923 33 H 0.082 0.918 34 H 0.074 0.926 35 H 0.025 0.975 36 H 0.076 0.924 37 H 0.061 0.939 38 H 0.014 0.986 39 H 0.078 0.922 40 H 0.096 0.904 41 H 0.087 0.913 42 H 0.118 0.882 43 H 0.113 0.887 44 H 0.129 0.871 45 H 0.139 0.861 46 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -23.683 5.335 -6.320 25.086 hybrid contribution 0.845 -0.566 0.436 1.107 sum -22.838 4.768 -5.884 24.061 Atomic orbital electron populations 1.23684 0.79229 1.04649 1.02889 1.87970 1.22180 1.25148 1.95079 1.20879 0.88575 0.85227 0.95745 1.22382 1.03386 1.00345 0.96758 1.20547 0.90166 0.80031 0.77807 1.90688 1.60863 1.44248 1.49662 1.46067 1.07749 1.32703 1.48392 1.20698 0.79819 0.98550 0.95409 1.22155 0.96725 0.99789 0.97607 1.20951 0.93319 0.96061 0.87681 1.44279 1.54390 1.33466 1.01096 1.19475 1.16407 0.97272 1.06787 0.91796 1.25966 0.98054 1.00312 0.99773 1.70156 1.41345 1.29704 1.16758 0.85232 0.78378 0.79795 0.76733 1.21218 1.21622 1.19305 1.20497 0.88532 0.94365 0.90919 1.22265 0.98484 1.00539 0.95499 1.22685 0.97836 1.04652 0.95938 1.23279 1.03487 0.97895 0.96933 1.23449 0.92506 1.00342 1.03275 0.91408 0.90804 0.88199 0.87926 0.90636 0.91148 0.74950 0.92271 0.91775 0.92569 0.97497 0.92442 0.93926 0.98596 0.92227 0.90363 0.91294 0.88239 0.88684 0.87050 0.86054 0.87436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.11 8.61 113.37 0.98 0.87 16 2 O -0.38 -7.43 8.86 -148.98 -1.32 -8.75 16 3 C 0.14 2.99 1.02 -11.54 -0.01 2.98 16 4 C -0.17 -2.76 7.79 71.98 0.56 -2.20 16 5 C 0.53 16.09 6.69 87.66 0.59 16.67 16 6 O -0.57 -22.10 15.41 -3.03 -0.05 -22.14 16 7 N -0.70 -20.56 4.99 -442.42 -2.21 -22.77 16 8 C 0.16 5.77 2.41 45.02 0.11 5.88 16 9 C -0.12 -4.70 5.65 30.67 0.17 -4.53 16 10 C 0.15 6.62 6.52 86.36 0.56 7.18 16 11 N -0.61 -31.62 2.97 -699.10 -2.08 -33.70 16 12 C -0.27 -15.08 9.55 84.03 0.80 -14.28 16 13 H 0.06 3.50 7.86 -2.91 -0.02 3.47 16 14 C -0.05 -2.54 4.99 84.86 0.42 -2.12 16 15 N -0.93 -55.59 11.29 21.65 0.24 -55.34 16 16 Si 0.97 44.89 29.57 68.60 2.03 46.92 16 17 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 18 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 19 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 20 C 0.18 8.93 5.25 86.36 0.45 9.38 16 21 C -0.13 -4.74 5.55 30.67 0.17 -4.57 16 22 C -0.19 -4.01 5.07 -10.79 -0.05 -4.06 16 23 C -0.18 -3.04 9.28 30.62 0.28 -2.75 16 24 C -0.16 -2.05 8.88 30.62 0.27 -1.78 16 25 H 0.07 0.53 5.72 -2.39 -0.01 0.52 16 26 H 0.07 0.71 3.59 -2.38 -0.01 0.70 16 27 H 0.10 0.88 8.14 -2.38 -0.02 0.86 16 28 H 0.10 1.05 5.24 -2.38 -0.01 1.03 16 29 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.41 10.20 8.04 -92.71 -0.75 9.46 16 32 H 0.06 2.43 7.58 -2.39 -0.02 2.42 16 33 H 0.06 2.40 8.14 -2.38 -0.02 2.38 16 34 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 35 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 36 H 0.06 2.54 7.93 -2.38 -0.02 2.52 16 37 H 0.25 14.43 8.31 -92.71 -0.77 13.66 16 38 H 0.00 -0.21 8.14 -2.38 -0.02 -0.23 16 39 H 0.06 3.22 6.30 -2.39 -0.02 3.20 16 40 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 41 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 42 H 0.10 2.62 7.23 -2.39 -0.02 2.60 16 43 H 0.09 1.59 8.14 -2.38 -0.02 1.57 16 44 H 0.11 1.82 5.48 -2.39 -0.01 1.81 16 45 H 0.12 1.04 5.00 -2.39 -0.01 1.02 16 46 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 Total: -1.00 -69.48 349.51 2.17 -67.31 By element: Atomic # 1 Polarization: 21.55 SS G_CDS: 0.24 Total: 21.79 kcal Atomic # 6 Polarization: 1.37 SS G_CDS: 5.31 Total: 6.68 kcal Atomic # 7 Polarization: -107.76 SS G_CDS: -4.04 Total: -111.80 kcal Atomic # 8 Polarization: -29.53 SS G_CDS: -1.37 Total: -30.89 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.92 kcal Total: -69.48 2.17 -67.31 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589699491.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.906 kcal (2) G-P(sol) polarization free energy of solvation -69.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds