Wall clock time and date at job start Tue Mar 31 2020 03:27:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47483 * 89.99568 * 3 2 1 5 5 H 1.48499 * 109.47134 * 210.00082 * 3 2 1 6 6 H 1.48507 * 109.46904 * 329.99905 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47348 * 179.97438 * 9 7 2 11 11 C 1.50696 * 109.46973 * 180.02562 * 10 9 7 12 12 O 1.21274 * 120.00119 * 0.02562 * 11 10 9 13 13 N 1.34777 * 119.99735 * 180.02562 * 11 10 9 14 14 C 1.47072 * 120.88326 * 359.71644 * 13 11 10 15 15 C 1.53699 * 108.27791 * 128.75868 * 14 13 11 16 16 N 1.46896 * 109.25351 * 54.08391 * 15 14 13 17 17 C 1.46909 * 110.99865 * 172.60975 * 16 15 14 18 18 H 1.08997 * 110.43057 * 66.84411 * 17 16 15 19 19 C 1.54883 * 110.48709 * 189.52556 * 17 16 15 20 20 C 1.54884 * 102.75003 * 156.62072 * 19 17 16 21 21 C 1.54270 * 104.19692 * 322.05744 * 20 19 17 22 22 C 1.53879 * 106.59444 * 23.60855 * 21 20 19 23 23 H 1.09003 * 110.03043 * 119.28637 * 22 21 20 24 24 O 1.42900 * 110.07311 * 240.69090 * 22 21 20 25 25 C 1.46894 * 111.27028 * 296.75420 * 16 15 14 26 26 C 1.47084 * 120.88143 * 179.97438 * 13 11 10 27 27 H 0.97001 * 119.99646 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46564 * 300.00328 * 9 7 2 29 29 H 1.09006 * 109.46863 * 59.99666 * 9 7 2 30 30 H 1.09000 * 109.46986 * 300.00089 * 10 9 7 31 31 H 1.09002 * 109.46857 * 60.00224 * 10 9 7 32 32 H 1.09002 * 109.63290 * 248.52918 * 14 13 11 33 33 H 1.09006 * 109.62987 * 9.10950 * 14 13 11 34 34 H 1.09002 * 109.64720 * 294.08250 * 15 14 13 35 35 H 1.09001 * 109.44263 * 173.96282 * 15 14 13 36 36 H 1.09000 * 110.75530 * 274.93543 * 19 17 16 37 37 H 1.09006 * 110.75701 * 38.30778 * 19 17 16 38 38 H 1.08996 * 110.49074 * 203.38237 * 20 19 17 39 39 H 1.09001 * 110.60345 * 80.79144 * 20 19 17 40 40 H 1.08996 * 110.03419 * 264.33027 * 21 20 19 41 41 H 1.08996 * 110.07356 * 142.91343 * 21 20 19 42 42 H 0.96701 * 113.99999 * 297.19267 * 24 22 21 43 43 H 1.09002 * 109.49473 * 303.14946 * 25 16 15 44 44 H 1.09001 * 109.49472 * 183.06832 * 25 16 15 45 45 H 1.09005 * 109.62303 * 350.89858 * 26 13 11 46 46 H 1.08997 * 109.63125 * 111.46899 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 3.5467 1.4402 -0.7000 6 1 1.4466 2.6527 -0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6621 0.0005 11 6 1.4919 -4.9671 -0.0001 12 8 0.2791 -4.9671 -0.0010 13 7 2.1658 -6.1343 0.0003 14 6 3.6363 -6.1569 -0.0049 15 6 4.1083 -7.0752 1.1337 16 7 3.4670 -8.3893 0.9937 17 6 4.0215 -9.3509 1.9560 18 1 3.7588 -9.0646 2.9743 19 6 3.5164 -10.7817 1.6448 20 6 4.6039 -11.6760 2.2901 21 6 5.9236 -10.9266 2.0129 22 6 5.5531 -9.4482 1.8004 23 1 6.0448 -8.8286 2.5504 24 8 5.9397 -9.0292 0.4900 25 6 2.0081 -8.2878 1.1322 26 6 1.4501 -7.4193 0.0003 27 1 -0.4850 -0.8401 -0.0004 28 1 0.6241 -2.5566 0.8903 29 1 0.6247 -2.5571 -0.8897 30 1 2.8720 -3.6043 -0.8894 31 1 2.8720 -3.6043 0.8906 32 1 3.9933 -6.5406 -0.9606 33 1 4.0186 -5.1485 0.1539 34 1 3.8356 -6.6378 2.0942 35 1 5.1909 -7.1912 1.0812 36 1 2.5459 -10.9581 2.1087 37 1 3.4675 -10.9486 0.5687 38 1 4.6177 -12.6592 1.8200 39 1 4.4366 -11.7695 3.3632 40 1 6.3980 -11.3251 1.1162 41 1 6.5955 -11.0243 2.8654 42 1 6.8926 -9.0676 0.3299 43 1 1.7647 -7.8335 2.0927 44 1 1.5674 -9.2833 1.0780 45 1 0.3862 -7.2458 0.1623 46 1 1.6005 -7.9222 -0.9550 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000589699908.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:27:03 Heat of formation + Delta-G solvation = -88.012118 kcal Electronic energy + Delta-G solvation = -24773.291063 eV Core-core repulsion = 21276.269743 eV Total energy + Delta-G solvation = -3497.021320 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.27221 -39.18944 -37.10276 -35.26813 -33.81423 -33.78610 -31.54989 -30.45723 -28.77940 -28.03699 -25.94303 -24.83375 -23.64754 -22.09799 -20.97883 -20.74658 -20.14110 -18.58844 -17.66447 -17.12157 -16.44669 -15.84170 -15.58202 -15.30682 -15.20808 -15.00934 -14.86541 -14.09208 -13.86413 -13.69693 -13.45829 -13.40686 -12.87357 -12.51402 -12.29493 -12.11819 -12.06749 -11.64833 -11.57968 -11.49949 -11.42300 -11.18549 -11.04425 -10.93918 -10.79167 -10.59961 -10.19294 -10.09858 -10.07431 -9.85744 -9.17613 -8.62761 -8.49394 -8.26455 -8.20200 -6.28981 -3.98752 3.18392 3.24703 3.46435 3.50825 3.62032 3.66378 3.96261 4.17005 4.20694 4.59135 4.59819 4.81472 4.88757 4.93212 4.97186 5.01988 5.20034 5.22506 5.24053 5.28025 5.36467 5.44619 5.47037 5.48778 5.56631 5.59514 5.62859 5.73204 5.82698 5.85459 5.92309 5.97515 6.06757 6.13243 6.16274 6.70379 6.80364 6.88856 6.96918 7.43632 7.56142 7.61422 7.77466 8.23446 8.53312 8.71255 8.95641 9.75025 11.12093 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.029841 B = 0.002925 C = 0.002739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.078426 B = 9568.768405 C =10221.135984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.014 3.986 3 Si 1.073 2.927 4 H -0.288 1.288 5 H -0.289 1.289 6 H -0.284 1.284 7 C -0.607 4.607 8 H 0.049 0.951 9 C 0.024 3.976 10 C -0.120 4.120 11 C 0.512 3.488 12 O -0.540 6.540 13 N -0.626 5.626 14 C 0.117 3.883 15 C 0.042 3.958 16 N -0.512 5.512 17 C 0.085 3.915 18 H 0.053 0.947 19 C -0.114 4.114 20 C -0.122 4.122 21 C -0.155 4.155 22 C 0.106 3.894 23 H 0.053 0.947 24 O -0.538 6.538 25 C 0.040 3.960 26 C 0.118 3.882 27 H 0.272 0.728 28 H 0.013 0.987 29 H 0.014 0.986 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.074 0.926 33 H 0.091 0.909 34 H 0.029 0.971 35 H 0.099 0.901 36 H 0.065 0.935 37 H 0.083 0.917 38 H 0.068 0.932 39 H 0.065 0.935 40 H 0.076 0.924 41 H 0.066 0.934 42 H 0.369 0.631 43 H 0.034 0.966 44 H 0.083 0.917 45 H 0.092 0.908 46 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.458 -25.220 4.636 29.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.190 4.190 3 Si 0.901 3.099 4 H -0.215 1.215 5 H -0.215 1.215 6 H -0.210 1.210 7 C -0.646 4.646 8 H 0.067 0.933 9 C -0.013 4.013 10 C -0.160 4.160 11 C 0.302 3.698 12 O -0.416 6.416 13 N -0.362 5.362 14 C -0.007 4.007 15 C -0.086 4.086 16 N -0.236 5.236 17 C -0.024 4.024 18 H 0.071 0.929 19 C -0.152 4.152 20 C -0.160 4.160 21 C -0.193 4.193 22 C 0.046 3.954 23 H 0.071 0.929 24 O -0.342 6.342 25 C -0.089 4.089 26 C -0.005 4.005 27 H 0.083 0.917 28 H 0.032 0.968 29 H 0.033 0.967 30 H 0.099 0.901 31 H 0.097 0.903 32 H 0.093 0.907 33 H 0.109 0.891 34 H 0.047 0.953 35 H 0.117 0.883 36 H 0.084 0.916 37 H 0.101 0.899 38 H 0.087 0.913 39 H 0.084 0.916 40 H 0.094 0.906 41 H 0.085 0.915 42 H 0.215 0.785 43 H 0.053 0.947 44 H 0.101 0.899 45 H 0.110 0.890 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 13.042 -23.628 4.097 27.297 hybrid contribution 0.793 -1.641 1.037 2.097 sum 13.834 -25.269 5.134 29.262 Atomic orbital electron populations 1.70701 1.06919 1.31023 1.46162 1.25851 0.96590 1.02682 0.93875 0.83502 0.74601 0.75119 0.76654 1.21523 1.21497 1.20997 1.22059 0.94163 0.92002 1.56328 0.93254 1.19024 0.93846 0.91196 0.97254 1.21717 1.00385 0.91523 1.02409 1.21554 0.88362 0.85567 0.74284 1.90635 1.14460 1.87274 1.49272 1.48349 1.06826 1.05745 1.75242 1.21859 0.79658 1.00178 0.98960 1.22657 1.00607 0.88392 0.96966 1.61887 1.03394 1.08366 1.49979 1.22568 0.92602 0.93355 0.93866 0.92903 1.22552 0.97807 0.92722 1.02121 1.22252 0.94400 0.98716 1.00607 1.22901 0.98299 0.95882 1.02260 1.22399 0.94423 0.93408 0.85137 0.92926 1.86767 1.27625 1.88587 1.31240 1.22528 0.88331 1.00149 0.97875 1.21534 0.97568 0.83357 0.98085 0.91697 0.96836 0.96735 0.90106 0.90286 0.90746 0.89083 0.95251 0.88261 0.91639 0.89853 0.91286 0.91634 0.90568 0.91505 0.78493 0.94733 0.89857 0.89013 0.91333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -29.34 13.65 55.43 0.76 -28.58 16 2 C 0.01 0.43 5.46 -17.82 -0.10 0.33 16 3 Si 1.07 25.87 29.90 -169.99 -5.08 20.79 16 4 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -6.54 7.11 56.52 0.40 -6.13 16 6 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 7 C -0.61 -17.82 9.11 -34.44 -0.31 -18.13 16 8 H 0.05 1.38 7.74 -52.48 -0.41 0.97 16 9 C 0.02 0.67 3.57 -27.88 -0.10 0.57 16 10 C -0.12 -2.60 4.00 -27.89 -0.11 -2.71 16 11 C 0.51 10.62 7.71 -10.99 -0.08 10.54 16 12 O -0.54 -13.29 15.43 5.56 0.09 -13.21 16 13 N -0.63 -10.15 3.00 -172.21 -0.52 -10.67 16 14 C 0.12 1.53 6.53 -3.37 -0.02 1.51 16 15 C 0.04 0.48 5.13 -3.46 -0.02 0.47 16 16 N -0.51 -5.64 4.01 -224.10 -0.90 -6.54 16 17 C 0.08 0.76 2.53 -66.05 -0.17 0.59 16 18 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 19 C -0.11 -0.88 5.47 -24.74 -0.14 -1.01 16 20 C -0.12 -0.74 6.83 -25.07 -0.17 -0.91 16 21 C -0.16 -0.90 6.61 -25.61 -0.17 -1.07 16 22 C 0.11 0.77 3.25 -25.61 -0.08 0.69 16 23 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 24 O -0.54 -4.31 10.56 -35.23 -0.37 -4.68 16 25 C 0.04 0.47 5.50 -3.73 -0.02 0.44 16 26 C 0.12 1.67 6.59 -3.62 -0.02 1.65 16 27 H 0.27 8.91 7.22 -40.82 -0.29 8.62 16 28 H 0.01 0.40 7.97 -51.93 -0.41 -0.01 16 29 H 0.01 0.43 7.97 -51.93 -0.41 0.02 16 30 H 0.08 1.62 7.99 -51.93 -0.41 1.20 16 31 H 0.08 1.58 7.67 -51.93 -0.40 1.18 16 32 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.09 1.17 6.02 -51.93 -0.31 0.86 16 34 H 0.03 0.37 8.14 -51.93 -0.42 -0.06 16 35 H 0.10 1.01 5.54 -51.93 -0.29 0.72 16 36 H 0.06 0.47 7.79 -51.93 -0.40 0.07 16 37 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.08 0.43 7.96 -51.93 -0.41 0.02 16 41 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 42 H 0.37 1.51 9.11 45.56 0.42 1.92 16 43 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.08 0.82 6.87 -51.93 -0.36 0.46 16 45 H 0.09 1.44 7.06 -51.93 -0.37 1.07 16 46 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 354.50 15.07 5.34 5.34 Total: -1.00 -35.92 354.50 -9.30 -45.22 By element: Atomic # 1 Polarization: 6.46 SS G_CDS: -7.09 Total: -0.63 kcal Atomic # 6 Polarization: -5.53 SS G_CDS: -1.52 Total: -7.05 kcal Atomic # 7 Polarization: -45.12 SS G_CDS: -0.66 Total: -45.78 kcal Atomic # 8 Polarization: -17.60 SS G_CDS: -0.29 Total: -17.89 kcal Atomic # 14 Polarization: 25.87 SS G_CDS: -5.08 Total: 20.79 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -35.92 -9.30 -45.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589699908.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.795 kcal (2) G-P(sol) polarization free energy of solvation -35.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds