Wall clock time and date at job start Tue Mar 31 2020 03:27:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47483 * 89.99568 * 3 2 1 5 5 H 1.48499 * 109.47134 * 210.00082 * 3 2 1 6 6 H 1.48507 * 109.46904 * 329.99905 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47348 * 179.97438 * 9 7 2 11 11 C 1.50696 * 109.46973 * 180.02562 * 10 9 7 12 12 O 1.21274 * 120.00119 * 0.02562 * 11 10 9 13 13 N 1.34777 * 119.99735 * 180.02562 * 11 10 9 14 14 C 1.47072 * 120.88326 * 359.71644 * 13 11 10 15 15 C 1.53699 * 108.27791 * 128.75868 * 14 13 11 16 16 N 1.46896 * 109.25351 * 54.08391 * 15 14 13 17 17 C 1.46909 * 110.99865 * 172.60975 * 16 15 14 18 18 H 1.08997 * 110.43057 * 66.84411 * 17 16 15 19 19 C 1.54883 * 110.48709 * 189.52556 * 17 16 15 20 20 C 1.54884 * 102.75003 * 156.62072 * 19 17 16 21 21 C 1.54270 * 104.19692 * 322.05744 * 20 19 17 22 22 C 1.53879 * 106.59444 * 23.60855 * 21 20 19 23 23 H 1.09003 * 110.03043 * 119.28637 * 22 21 20 24 24 O 1.42900 * 110.07311 * 240.69090 * 22 21 20 25 25 C 1.46894 * 111.27028 * 296.75420 * 16 15 14 26 26 C 1.47084 * 120.88143 * 179.97438 * 13 11 10 27 27 H 0.97001 * 119.99646 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46564 * 300.00328 * 9 7 2 29 29 H 1.09006 * 109.46863 * 59.99666 * 9 7 2 30 30 H 1.09000 * 109.46986 * 300.00089 * 10 9 7 31 31 H 1.09002 * 109.46857 * 60.00224 * 10 9 7 32 32 H 1.09002 * 109.63290 * 248.52918 * 14 13 11 33 33 H 1.09006 * 109.62987 * 9.10950 * 14 13 11 34 34 H 1.09002 * 109.64720 * 294.08250 * 15 14 13 35 35 H 1.09001 * 109.44263 * 173.96282 * 15 14 13 36 36 H 1.09000 * 110.75530 * 274.93543 * 19 17 16 37 37 H 1.09006 * 110.75701 * 38.30778 * 19 17 16 38 38 H 1.08996 * 110.49074 * 203.38237 * 20 19 17 39 39 H 1.09001 * 110.60345 * 80.79144 * 20 19 17 40 40 H 1.08996 * 110.03419 * 264.33027 * 21 20 19 41 41 H 1.08996 * 110.07356 * 142.91343 * 21 20 19 42 42 H 0.96701 * 113.99999 * 297.19267 * 24 22 21 43 43 H 1.09002 * 109.49473 * 303.14946 * 25 16 15 44 44 H 1.09001 * 109.49472 * 183.06832 * 25 16 15 45 45 H 1.09005 * 109.62303 * 350.89858 * 26 13 11 46 46 H 1.08997 * 109.63125 * 111.46899 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 3.5467 1.4402 -0.7000 6 1 1.4466 2.6527 -0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6621 0.0005 11 6 1.4919 -4.9671 -0.0001 12 8 0.2791 -4.9671 -0.0010 13 7 2.1658 -6.1343 0.0003 14 6 3.6363 -6.1569 -0.0049 15 6 4.1083 -7.0752 1.1337 16 7 3.4670 -8.3893 0.9937 17 6 4.0215 -9.3509 1.9560 18 1 3.7588 -9.0646 2.9743 19 6 3.5164 -10.7817 1.6448 20 6 4.6039 -11.6760 2.2901 21 6 5.9236 -10.9266 2.0129 22 6 5.5531 -9.4482 1.8004 23 1 6.0448 -8.8286 2.5504 24 8 5.9397 -9.0292 0.4900 25 6 2.0081 -8.2878 1.1322 26 6 1.4501 -7.4193 0.0003 27 1 -0.4850 -0.8401 -0.0004 28 1 0.6241 -2.5566 0.8903 29 1 0.6247 -2.5571 -0.8897 30 1 2.8720 -3.6043 -0.8894 31 1 2.8720 -3.6043 0.8906 32 1 3.9933 -6.5406 -0.9606 33 1 4.0186 -5.1485 0.1539 34 1 3.8356 -6.6378 2.0942 35 1 5.1909 -7.1912 1.0812 36 1 2.5459 -10.9581 2.1087 37 1 3.4675 -10.9486 0.5687 38 1 4.6177 -12.6592 1.8200 39 1 4.4366 -11.7695 3.3632 40 1 6.3980 -11.3251 1.1162 41 1 6.5955 -11.0243 2.8654 42 1 6.8926 -9.0676 0.3299 43 1 1.7647 -7.8335 2.0927 44 1 1.5674 -9.2833 1.0780 45 1 0.3862 -7.2458 0.1623 46 1 1.6005 -7.9222 -0.9550 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000589699908.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:27:03 Heat of formation + Delta-G solvation = -114.530395 kcal Electronic energy + Delta-G solvation = -24774.440982 eV Core-core repulsion = 21276.269743 eV Total energy + Delta-G solvation = -3498.171239 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.40787 -40.26628 -38.20688 -35.99537 -35.94740 -34.86602 -33.14435 -31.96544 -29.70993 -28.62436 -27.50062 -26.23493 -24.85549 -23.89319 -22.19857 -21.39474 -20.86605 -19.91030 -19.14336 -18.35524 -17.81819 -17.02446 -16.90504 -16.67311 -16.00060 -15.81339 -15.79058 -15.61308 -15.23467 -15.00396 -14.74542 -14.51282 -14.10980 -13.86290 -13.66923 -13.43897 -13.35260 -13.01268 -12.70367 -12.53270 -12.37158 -12.21164 -12.08925 -12.02755 -11.94322 -11.88985 -11.81751 -11.56370 -11.23110 -10.95653 -10.71844 -10.65001 -10.56844 -9.83788 -9.24294 -8.70936 -6.42731 1.53643 1.54549 1.64753 1.81633 1.92405 2.59110 2.77522 3.15940 3.38383 3.57900 3.64223 3.68479 3.89267 3.97257 4.10465 4.18704 4.23935 4.24268 4.30068 4.34227 4.42834 4.44047 4.47630 4.52699 4.63001 4.74369 4.77858 4.79794 4.86808 4.94867 5.01335 5.04726 5.12291 5.16172 5.23534 5.24933 5.33476 5.44104 5.49248 5.91687 6.02337 6.07880 6.15464 6.34115 6.49540 7.06795 7.12267 7.43714 8.68974 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.029841 B = 0.002925 C = 0.002739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.078426 B = 9568.768405 C =10221.135984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C -0.047 4.047 3 Si 1.128 2.872 4 H -0.271 1.271 5 H -0.259 1.259 6 H -0.286 1.286 7 C -0.617 4.617 8 H 0.068 0.932 9 C 0.028 3.972 10 C -0.108 4.108 11 C 0.509 3.491 12 O -0.592 6.592 13 N -0.614 5.614 14 C 0.111 3.889 15 C 0.049 3.951 16 N -0.514 5.514 17 C 0.077 3.923 18 H 0.051 0.949 19 C -0.112 4.112 20 C -0.120 4.120 21 C -0.149 4.149 22 C 0.108 3.892 23 H 0.060 0.940 24 O -0.557 6.557 25 C 0.050 3.950 26 C 0.115 3.885 27 H 0.251 0.749 28 H -0.023 1.023 29 H -0.022 1.022 30 H 0.102 0.898 31 H 0.100 0.900 32 H 0.087 0.913 33 H 0.096 0.904 34 H 0.018 0.982 35 H 0.119 0.881 36 H 0.067 0.933 37 H 0.070 0.930 38 H 0.075 0.925 39 H 0.072 0.928 40 H 0.078 0.922 41 H 0.080 0.920 42 H 0.386 0.614 43 H 0.021 0.979 44 H 0.104 0.896 45 H 0.071 0.929 46 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.912 -26.284 5.007 32.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.243 4.243 3 Si 0.948 3.052 4 H -0.196 1.196 5 H -0.183 1.183 6 H -0.212 1.212 7 C -0.655 4.655 8 H 0.086 0.914 9 C -0.009 4.009 10 C -0.148 4.148 11 C 0.299 3.701 12 O -0.473 6.473 13 N -0.347 5.347 14 C -0.011 4.011 15 C -0.080 4.080 16 N -0.239 5.239 17 C -0.032 4.032 18 H 0.069 0.931 19 C -0.150 4.150 20 C -0.158 4.158 21 C -0.188 4.188 22 C 0.048 3.952 23 H 0.078 0.922 24 O -0.364 6.364 25 C -0.079 4.079 26 C -0.008 4.008 27 H 0.060 0.940 28 H -0.004 1.004 29 H -0.003 1.003 30 H 0.120 0.880 31 H 0.118 0.882 32 H 0.105 0.895 33 H 0.115 0.885 34 H 0.037 0.963 35 H 0.137 0.863 36 H 0.086 0.914 37 H 0.089 0.911 38 H 0.093 0.907 39 H 0.091 0.909 40 H 0.097 0.903 41 H 0.099 0.901 42 H 0.235 0.765 43 H 0.039 0.961 44 H 0.122 0.878 45 H 0.089 0.911 46 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 16.569 -24.769 4.472 30.134 hybrid contribution -0.258 -1.428 0.905 1.710 sum 16.311 -26.197 5.377 31.325 Atomic orbital electron populations 1.70869 1.08394 1.29715 1.48783 1.27720 0.96512 1.07524 0.92534 0.82837 0.74288 0.70210 0.77913 1.19610 1.18321 1.21176 1.22507 0.95210 0.92557 1.55224 0.91374 1.18860 0.94305 0.93904 0.93849 1.21493 0.99030 0.89845 1.04386 1.21361 0.87641 0.86668 0.74395 1.90617 1.16499 1.88040 1.52131 1.48348 1.08373 1.05091 1.72930 1.22143 0.77251 1.01253 1.00440 1.22616 1.01626 0.88221 0.95488 1.61914 1.02618 1.08431 1.50926 1.22729 0.94078 0.93209 0.93154 0.93145 1.22520 0.98640 0.92385 1.01460 1.22261 0.93880 0.98677 1.00951 1.22859 0.98293 0.94644 1.02956 1.22394 0.93054 0.94582 0.85167 0.92171 1.86697 1.29456 1.88721 1.31505 1.22417 0.89264 1.00382 0.95856 1.21680 0.96556 0.82696 0.99870 0.93982 1.00437 1.00350 0.87990 0.88158 0.89509 0.88541 0.96325 0.86349 0.91403 0.91110 0.90651 0.90926 0.90346 0.90142 0.76503 0.96084 0.87797 0.91059 0.90064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -62.42 13.65 21.45 0.29 -62.13 16 2 C -0.05 -2.81 5.46 84.65 0.46 -2.35 16 3 Si 1.13 51.06 29.90 68.60 2.05 53.11 16 4 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 5 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16 6 H -0.29 -12.96 7.11 99.48 0.71 -12.25 16 7 C -0.62 -36.35 9.11 25.60 0.23 -36.11 16 8 H 0.07 3.69 7.74 -2.91 -0.02 3.67 16 9 C 0.03 1.63 3.57 29.85 0.11 1.74 16 10 C -0.11 -4.65 4.00 29.85 0.12 -4.53 16 11 C 0.51 21.57 7.71 87.66 0.68 22.25 16 12 O -0.59 -30.72 15.43 -3.01 -0.05 -30.77 16 13 N -0.61 -19.64 3.00 -817.13 -2.45 -22.10 16 14 C 0.11 2.69 6.53 86.51 0.57 3.25 16 15 C 0.05 1.01 5.13 86.54 0.44 1.46 16 16 N -0.51 -10.37 4.01 -862.91 -3.46 -13.83 16 17 C 0.08 1.21 2.53 45.98 0.12 1.32 16 18 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 19 C -0.11 -1.50 5.47 31.88 0.17 -1.33 16 20 C -0.12 -1.14 6.83 31.67 0.22 -0.93 16 21 C -0.15 -1.28 6.61 31.32 0.21 -1.08 16 22 C 0.11 1.27 3.25 31.32 0.10 1.37 16 23 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 24 O -0.56 -7.28 10.56 -148.98 -1.57 -8.85 16 25 C 0.05 1.11 5.50 86.37 0.47 1.59 16 26 C 0.11 3.23 6.59 86.33 0.57 3.80 16 27 H 0.25 17.38 7.22 -92.71 -0.67 16.71 16 28 H -0.02 -1.45 7.97 -2.39 -0.02 -1.47 16 29 H -0.02 -1.40 7.97 -2.38 -0.02 -1.42 16 30 H 0.10 3.95 7.99 -2.39 -0.02 3.93 16 31 H 0.10 3.88 7.67 -2.39 -0.02 3.86 16 32 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 33 H 0.10 2.24 6.02 -2.38 -0.01 2.22 16 34 H 0.02 0.43 8.14 -2.39 -0.02 0.41 16 35 H 0.12 2.06 5.54 -2.39 -0.01 2.04 16 36 H 0.07 0.86 7.79 -2.39 -0.02 0.84 16 37 H 0.07 1.15 8.14 -2.38 -0.02 1.13 16 38 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 39 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 40 H 0.08 0.66 7.96 -2.39 -0.02 0.64 16 41 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 42 H 0.39 1.98 9.11 -74.06 -0.67 1.31 16 43 H 0.02 0.53 8.14 -2.39 -0.02 0.51 16 44 H 0.10 1.91 6.87 -2.39 -0.02 1.89 16 45 H 0.07 2.32 7.06 -2.38 -0.02 2.30 16 46 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 Total: -1.00 -80.77 354.50 -0.34 -81.11 By element: Atomic # 1 Polarization: 12.62 SS G_CDS: 0.39 Total: 13.01 kcal Atomic # 6 Polarization: -14.01 SS G_CDS: 4.47 Total: -9.54 kcal Atomic # 7 Polarization: -92.43 SS G_CDS: -5.62 Total: -98.06 kcal Atomic # 8 Polarization: -38.00 SS G_CDS: -1.62 Total: -39.62 kcal Atomic # 14 Polarization: 51.06 SS G_CDS: 2.05 Total: 53.11 kcal Total: -80.77 -0.34 -81.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589699908.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.423 kcal (2) G-P(sol) polarization free energy of solvation -80.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds