Wall clock time and date at job start Tue Mar 31 2020 03:27:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86802 * 120.00333 * 2 1 4 4 H 1.48498 * 109.47386 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.46876 * 300.00058 * 3 2 1 6 6 H 1.48497 * 109.46997 * 59.99497 * 3 2 1 7 7 C 1.37877 * 119.99957 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99961 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99944 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.46994 * 179.97438 * 9 7 2 11 11 C 1.50706 * 109.47068 * 179.97438 * 10 9 7 12 12 O 1.21276 * 119.99650 * 0.02562 * 11 10 9 13 13 N 1.34776 * 119.99837 * 180.02562 * 11 10 9 14 14 C 1.47082 * 120.87723 * 180.02562 * 13 11 10 15 15 C 1.53246 * 108.51634 * 231.20387 * 14 13 11 16 16 N 1.46902 * 109.34111 * 306.17026 * 15 14 13 17 17 C 1.46895 * 110.99697 * 187.25712 * 16 15 14 18 18 H 1.08997 * 110.01868 * 301.38624 * 17 16 15 19 19 C 1.54261 * 110.03630 * 62.83155 * 17 16 15 20 20 C 1.54888 * 104.19672 * 142.89148 * 19 17 16 21 21 C 1.54891 * 102.75120 * 322.06034 * 20 19 17 22 22 C 1.53876 * 110.03033 * 180.02562 * 17 16 15 23 23 H 1.08995 * 110.03160 * 359.97438 * 22 17 16 24 24 O 1.42900 * 110.03320 * 121.42669 * 22 17 16 25 25 C 1.46897 * 111.26644 * 63.10352 * 16 15 14 26 26 C 1.47076 * 120.88193 * 0.02562 * 13 11 10 27 27 H 0.97004 * 119.99883 * 0.02562 * 1 2 3 28 28 H 1.09001 * 109.47190 * 59.99611 * 9 7 2 29 29 H 1.08998 * 109.46579 * 299.99664 * 9 7 2 30 30 H 1.09005 * 109.47344 * 59.99670 * 10 9 7 31 31 H 1.08997 * 109.47244 * 299.99954 * 10 9 7 32 32 H 1.09004 * 109.62896 * 111.49926 * 14 13 11 33 33 H 1.08997 * 109.78779 * 351.00302 * 14 13 11 34 34 H 1.09003 * 109.48893 * 186.20823 * 15 14 13 35 35 H 1.08998 * 109.51469 * 66.14312 * 15 14 13 36 36 H 1.09000 * 110.48928 * 261.57157 * 19 17 16 37 37 H 1.08999 * 110.48469 * 24.21566 * 19 17 16 38 38 H 1.09005 * 110.75648 * 80.37263 * 20 19 17 39 39 H 1.09004 * 110.75897 * 203.55715 * 20 19 17 40 40 H 1.09004 * 110.48613 * 279.26383 * 21 20 19 41 41 H 1.08994 * 110.48745 * 156.61801 * 21 20 19 42 42 H 0.96708 * 113.99878 * 179.97438 * 24 22 17 43 43 H 1.08998 * 109.49225 * 56.85793 * 25 16 15 44 44 H 1.09003 * 109.49019 * 176.93525 * 25 16 15 45 45 H 1.08998 * 109.63057 * 248.49988 * 26 13 11 46 46 H 1.09001 * 109.63025 * 8.89334 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4916 -4.9672 0.0012 12 8 0.2788 -4.9671 0.0011 13 7 2.1655 -6.1344 0.0018 14 6 1.4497 -7.4193 0.0019 15 6 2.0078 -8.2872 1.1349 16 7 3.4667 -8.3889 0.9965 17 6 4.0210 -9.3499 1.9593 18 1 3.7719 -9.0456 2.9758 19 6 3.4646 -10.7609 1.6776 20 6 4.6594 -11.7043 1.9630 21 6 5.8669 -10.9008 1.4195 22 6 5.5485 -9.4384 1.7956 23 1 5.8783 -8.7686 1.0015 24 8 6.1931 -9.0971 3.0245 25 6 4.1080 -7.0746 1.1358 26 6 3.6361 -6.1570 0.0024 27 1 -0.4850 0.8401 -0.0004 28 1 0.6245 -2.5571 -0.8896 29 1 0.6240 -2.5567 0.8903 30 1 2.8719 -3.6043 0.8905 31 1 2.8718 -3.6044 -0.8894 32 1 1.6006 -7.9226 -0.9532 33 1 0.3851 -7.2486 0.1617 34 1 1.5670 -9.2827 1.0813 35 1 1.7643 -7.8329 2.0953 36 1 2.6339 -10.9841 2.3471 37 1 3.1510 -10.8465 0.6373 38 1 4.7641 -11.8822 3.0334 39 1 4.5450 -12.6459 1.4259 40 1 5.9412 -11.0091 0.3374 41 1 6.7892 -11.2261 1.9006 42 1 7.1587 -9.1346 2.9858 43 1 3.8353 -6.6368 2.0959 44 1 5.1905 -7.1907 1.0828 45 1 3.9969 -6.5391 -0.9525 46 1 4.0178 -5.1484 0.1610 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000589699911.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:27:05 Heat of formation + Delta-G solvation = -86.708847 kcal Electronic energy + Delta-G solvation = -24601.256821 eV Core-core repulsion = 21104.292014 eV Total energy + Delta-G solvation = -3496.964806 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.32869 -39.17047 -37.21260 -35.32223 -33.72883 -33.49454 -31.67120 -30.64825 -28.80941 -28.00913 -26.16966 -25.09262 -23.73482 -22.05667 -21.09279 -20.70491 -19.95813 -18.52474 -17.64943 -17.00517 -16.33321 -15.98002 -15.67197 -15.39779 -15.19533 -15.07030 -14.57873 -14.37901 -14.27123 -13.44960 -13.38011 -13.21056 -12.85218 -12.54913 -12.39804 -12.15964 -12.02240 -11.82762 -11.47839 -11.40631 -11.36015 -11.13679 -11.09642 -10.97633 -10.93448 -10.74071 -10.55462 -10.17286 -9.94902 -9.59960 -9.14967 -8.96404 -8.72809 -8.33397 -8.26159 -5.94938 -3.99234 3.19754 3.24523 3.33289 3.40316 3.43572 3.49862 3.96708 4.13658 4.38627 4.47891 4.61744 4.75326 4.87616 4.92415 5.05607 5.13422 5.18648 5.21699 5.24729 5.28439 5.37147 5.40075 5.43851 5.48745 5.55214 5.59486 5.62807 5.67693 5.74432 5.81961 5.89901 5.97248 6.03041 6.21918 6.23633 6.70144 6.80476 6.81330 6.93701 7.32489 7.75999 7.78885 7.87947 8.08649 8.39886 8.76518 9.09452 9.64255 11.16116 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.027960 B = 0.002896 C = 0.002690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.196455 B = 9666.913804 C =10407.212487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.057 3.943 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.526 4.526 8 H 0.056 0.944 9 C 0.037 3.963 10 C -0.128 4.128 11 C 0.513 3.487 12 O -0.535 6.535 13 N -0.627 5.627 14 C 0.117 3.883 15 C 0.043 3.957 16 N -0.530 5.530 17 C 0.086 3.914 18 H 0.056 0.944 19 C -0.116 4.116 20 C -0.120 4.120 21 C -0.151 4.151 22 C 0.099 3.901 23 H 0.071 0.929 24 O -0.567 6.567 25 C 0.036 3.964 26 C 0.115 3.885 27 H 0.260 0.740 28 H 0.023 0.977 29 H 0.023 0.977 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.068 0.932 33 H 0.094 0.906 34 H 0.085 0.915 35 H 0.039 0.961 36 H 0.066 0.934 37 H 0.081 0.919 38 H 0.067 0.933 39 H 0.068 0.932 40 H 0.076 0.924 41 H 0.069 0.931 42 H 0.378 0.622 43 H 0.042 0.958 44 H 0.087 0.913 45 H 0.071 0.929 46 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.510 -24.737 2.714 28.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.144 4.144 3 Si 0.720 3.280 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.564 4.564 8 H 0.074 0.926 9 C -0.001 4.001 10 C -0.168 4.168 11 C 0.303 3.697 12 O -0.410 6.410 13 N -0.364 5.364 14 C -0.006 4.006 15 C -0.086 4.086 16 N -0.256 5.256 17 C -0.023 4.023 18 H 0.074 0.926 19 C -0.154 4.154 20 C -0.158 4.158 21 C -0.189 4.189 22 C 0.040 3.960 23 H 0.089 0.911 24 O -0.373 6.373 25 C -0.092 4.092 26 C -0.008 4.008 27 H 0.070 0.930 28 H 0.042 0.958 29 H 0.041 0.959 30 H 0.096 0.904 31 H 0.097 0.903 32 H 0.086 0.914 33 H 0.112 0.888 34 H 0.104 0.896 35 H 0.057 0.943 36 H 0.085 0.915 37 H 0.100 0.900 38 H 0.086 0.914 39 H 0.087 0.913 40 H 0.094 0.906 41 H 0.088 0.912 42 H 0.225 0.775 43 H 0.060 0.940 44 H 0.105 0.895 45 H 0.090 0.910 46 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 12.152 -24.678 2.441 27.615 hybrid contribution 0.966 1.077 0.655 1.588 sum 13.118 -23.601 3.096 27.178 Atomic orbital electron populations 1.70011 1.06062 1.26448 1.50323 1.25030 0.94824 0.99238 0.95339 0.86538 0.80007 0.83856 0.77577 1.19740 1.21012 1.21035 1.21257 0.92937 0.90995 1.51202 0.92571 1.18909 0.93183 0.89392 0.98592 1.21875 1.00723 0.91983 1.02205 1.21591 0.88414 0.85452 0.74212 1.90652 1.14402 1.87142 1.48811 1.48351 1.06519 1.05849 1.75636 1.21547 0.97824 0.83396 0.97867 1.22505 0.87369 1.00413 0.98269 1.62102 1.04640 1.08466 1.50358 1.22174 0.92353 0.92983 0.94751 0.92626 1.22435 0.97755 0.92570 1.02609 1.22417 0.94341 0.97934 1.01106 1.23028 0.98772 0.95595 1.01538 1.22506 0.92451 0.94838 0.86156 0.91112 1.86535 1.23842 1.91921 1.34960 1.22591 0.99560 0.88841 0.98254 1.21772 0.80208 1.00449 0.98414 0.93014 0.95821 0.95882 0.90390 0.90251 0.91367 0.88778 0.89625 0.94260 0.91478 0.90002 0.91378 0.91320 0.90558 0.91219 0.77460 0.93983 0.89463 0.91027 0.88670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.71 13.29 55.43 0.74 -26.98 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 21.81 29.54 -169.99 -5.02 16.79 16 4 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 7 C -0.53 -15.06 9.11 -34.44 -0.31 -15.37 16 8 H 0.06 1.52 7.74 -52.48 -0.41 1.11 16 9 C 0.04 1.01 4.26 -27.88 -0.12 0.89 16 10 C -0.13 -2.67 4.00 -27.88 -0.11 -2.78 16 11 C 0.51 10.35 7.71 -10.98 -0.08 10.26 16 12 O -0.53 -12.98 15.44 5.56 0.09 -12.90 16 13 N -0.63 -9.69 3.01 -172.44 -0.52 -10.20 16 14 C 0.12 1.56 6.59 -3.60 -0.02 1.54 16 15 C 0.04 0.48 5.47 -3.70 -0.02 0.46 16 16 N -0.53 -5.47 4.42 -224.99 -0.99 -6.47 16 17 C 0.09 0.80 2.49 -66.60 -0.17 0.64 16 18 H 0.06 0.64 7.95 -51.93 -0.41 0.22 16 19 C -0.12 -0.89 5.15 -25.08 -0.13 -1.02 16 20 C -0.12 -0.80 6.91 -24.74 -0.17 -0.97 16 21 C -0.15 -0.96 6.56 -25.04 -0.16 -1.13 16 22 C 0.10 0.79 3.32 -25.58 -0.09 0.71 16 23 H 0.07 0.56 6.10 -51.93 -0.32 0.24 16 24 O -0.57 -4.80 13.21 -35.23 -0.47 -5.26 16 25 C 0.04 0.39 5.33 -3.69 -0.02 0.37 16 26 C 0.12 1.39 6.51 -3.59 -0.02 1.36 16 27 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 28 H 0.02 0.71 8.10 -51.93 -0.42 0.28 16 29 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 30 H 0.08 1.50 7.66 -51.93 -0.40 1.10 16 31 H 0.08 1.51 8.00 -51.93 -0.42 1.10 16 32 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.09 1.41 7.07 -51.93 -0.37 1.04 16 34 H 0.09 0.79 6.90 -51.93 -0.36 0.43 16 35 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.08 0.64 7.93 -51.93 -0.41 0.23 16 38 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 40 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.07 0.37 8.06 -51.93 -0.42 -0.05 16 42 H 0.38 1.60 9.11 45.56 0.41 2.01 16 43 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.09 0.80 5.86 -51.93 -0.30 0.50 16 45 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 46 H 0.10 1.13 6.02 -51.93 -0.31 0.81 16 LS Contribution 357.15 15.07 5.38 5.38 Total: -1.00 -35.07 357.15 -9.39 -44.46 By element: Atomic # 1 Polarization: 5.69 SS G_CDS: -7.07 Total: -1.37 kcal Atomic # 6 Polarization: -1.93 SS G_CDS: -1.53 Total: -3.46 kcal Atomic # 7 Polarization: -42.87 SS G_CDS: -0.78 Total: -43.65 kcal Atomic # 8 Polarization: -17.78 SS G_CDS: -0.38 Total: -18.16 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -35.07 -9.39 -44.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589699911.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.252 kcal (2) G-P(sol) polarization free energy of solvation -35.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds