Wall clock time and date at job start Tue Mar 31 2020 03:29:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 120.00139 * 2 1 4 4 H 1.48508 * 109.47021 * 180.27706 * 3 2 1 5 5 H 1.48500 * 109.47081 * 300.27550 * 3 2 1 6 6 H 1.48501 * 109.47213 * 60.27922 * 3 2 1 7 7 C 1.37885 * 119.99792 * 180.27823 * 2 1 3 8 8 H 1.07999 * 119.99964 * 179.72485 * 7 2 1 9 9 C 1.50700 * 120.00047 * 359.72305 * 7 2 1 10 10 O 1.42899 * 110.27406 * 59.29762 * 9 7 2 11 11 C 1.54601 * 110.30664 * 297.21135 * 9 7 2 12 12 C 1.55103 * 102.84538 * 219.18372 * 11 9 7 13 13 N 1.48535 * 103.28125 * 37.30582 * 12 11 9 14 14 C 1.46899 * 111.00098 * 200.33413 * 13 12 11 15 15 C 1.53004 * 109.46867 * 287.39520 * 14 13 12 16 16 C 1.50703 * 109.47100 * 179.97438 * 15 14 13 17 17 O 1.21280 * 119.99946 * 0.02562 * 16 15 14 18 18 N 1.34773 * 119.99909 * 180.02562 * 16 15 14 19 19 C 1.46925 * 120.63430 * 359.72116 * 18 16 15 20 20 C 1.53624 * 108.54211 * 126.36448 * 19 18 16 21 21 C 1.53040 * 109.23819 * 54.86425 * 20 19 18 22 22 C 1.53046 * 109.53792 * 298.50234 * 21 20 19 23 23 C 1.46932 * 120.62895 * 180.02562 * 18 16 15 24 24 C 1.47908 * 105.82202 * 320.84797 * 13 12 11 25 25 H 0.97000 * 119.99468 * 359.71811 * 1 2 3 26 26 H 0.96699 * 114.00025 * 300.70280 * 10 9 7 27 27 H 1.09003 * 110.72458 * 337.48004 * 11 9 7 28 28 H 1.09005 * 110.72391 * 100.76907 * 11 9 7 29 29 H 1.08996 * 110.59657 * 278.87550 * 12 11 9 30 30 H 1.08994 * 110.83258 * 155.84556 * 12 11 9 31 31 H 1.08997 * 109.47414 * 47.39601 * 14 13 12 32 32 H 1.08999 * 109.47616 * 167.39850 * 14 13 12 33 33 H 1.08997 * 109.47384 * 299.99722 * 15 14 13 34 34 H 1.09001 * 109.47057 * 60.00496 * 15 14 13 35 35 H 1.08994 * 109.58801 * 246.20488 * 19 18 16 36 36 H 1.09005 * 109.58054 * 6.62965 * 19 18 16 37 37 H 1.08996 * 109.64136 * 294.86733 * 20 19 18 38 38 H 1.09001 * 109.45641 * 174.73908 * 20 19 18 39 39 H 1.09002 * 109.45920 * 178.48448 * 21 20 19 40 40 H 1.09000 * 109.45233 * 58.52346 * 21 20 19 41 41 H 1.08995 * 109.49874 * 301.41823 * 22 21 20 42 42 H 1.09002 * 109.52293 * 181.33411 * 22 21 20 43 43 H 1.09000 * 109.58815 * 353.37014 * 23 18 16 44 44 H 1.08996 * 109.58789 * 113.65784 * 23 18 16 45 45 H 1.09001 * 109.91016 * 265.97584 * 24 13 12 46 46 H 1.08993 * 109.91789 * 144.68733 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 -0.0068 5 1 1.8854 2.3993 -1.2091 6 1 1.8956 2.3934 1.2159 7 6 2.0046 -1.1941 -0.0058 8 1 3.0845 -1.1941 -0.0103 9 6 1.2510 -2.4992 -0.0058 10 8 0.4059 -2.5830 -1.1551 11 6 0.4140 -2.6355 1.2868 12 6 0.5749 -4.1360 1.6452 13 7 1.9845 -4.4254 1.2775 14 6 2.1938 -5.8670 1.0879 15 6 2.1728 -6.5684 2.4475 16 6 2.3869 -8.0475 2.2531 17 8 2.5415 -8.4962 1.1370 18 7 2.4065 -8.8714 3.3194 19 6 2.2268 -8.3419 4.6781 20 6 1.0848 -9.1141 5.3562 21 6 1.3876 -10.6132 5.3013 22 6 1.4735 -11.0649 3.8416 23 6 2.6147 -10.3155 3.1458 24 6 2.2342 -3.6840 0.0222 25 1 -0.4849 0.8401 0.0041 26 1 -0.2488 -1.8738 -1.2144 27 1 0.8200 -2.0047 2.0776 28 1 -0.6316 -2.3927 1.0967 29 1 -0.1095 -4.7464 1.0561 30 1 0.4140 -4.2994 2.7108 31 1 1.4000 -6.2698 0.4590 32 1 3.1580 -6.0342 0.6077 33 1 2.9667 -6.1657 3.0765 34 1 1.2087 -6.4013 2.9277 35 1 3.1478 -8.4726 5.2460 36 1 1.9737 -7.2829 4.6269 37 1 0.1477 -8.9129 4.8372 38 1 1.0001 -8.7979 6.3959 39 1 0.5926 -11.1629 5.8053 40 1 2.3371 -10.8102 5.7990 41 1 0.5328 -10.8454 3.3368 42 1 1.6656 -12.1372 3.8028 43 1 2.6177 -10.5592 2.0834 44 1 3.5679 -10.6032 3.5895 45 1 2.0568 -4.3342 -0.8345 46 1 3.2600 -3.3159 0.0061 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592146162.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:29:33 Heat of formation + Delta-G solvation = -91.771450 kcal Electronic energy + Delta-G solvation = -24633.373732 eV Core-core repulsion = 21136.189394 eV Total energy + Delta-G solvation = -3497.184337 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.31753 -38.38430 -37.47509 -34.99003 -33.22692 -32.04949 -32.00188 -31.08547 -28.56770 -27.86318 -25.69685 -24.50595 -23.60273 -22.60431 -21.03169 -20.10031 -19.41680 -18.88418 -17.32119 -17.04006 -15.99946 -15.81171 -15.11894 -14.86266 -14.80849 -14.42403 -14.39175 -14.21100 -13.90217 -13.75033 -13.35698 -13.03972 -12.68682 -12.38121 -12.18799 -12.08155 -11.86842 -11.58991 -11.31412 -11.30634 -11.11362 -11.04733 -10.91388 -10.85136 -10.70768 -10.44989 -10.36831 -10.24092 -9.91201 -9.74349 -9.10852 -8.82354 -8.55295 -8.06408 -7.76543 -6.16206 -4.21916 2.61375 2.82416 3.25185 3.33659 3.38778 4.27134 4.35857 4.43101 4.52760 4.57208 4.74885 4.91330 4.96030 5.09059 5.12321 5.18279 5.19597 5.34342 5.42325 5.48355 5.51867 5.61389 5.69180 5.70538 5.76213 5.79645 5.92952 5.97482 6.12608 6.18033 6.25028 6.28662 6.37562 6.52191 6.53611 6.97804 7.09126 7.24385 7.33394 7.55898 7.69315 7.74378 7.88313 8.13758 8.21401 8.80133 9.44882 9.56178 10.91487 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.033150 B = 0.002874 C = 0.002813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.430381 B = 9741.644695 C = 9950.365299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.067 3.933 3 Si 0.900 3.100 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.525 4.525 8 H 0.062 0.938 9 C 0.242 3.758 10 O -0.594 6.594 11 C -0.117 4.117 12 C 0.029 3.971 13 N -0.516 5.516 14 C 0.063 3.937 15 C -0.131 4.131 16 C 0.518 3.482 17 O -0.541 6.541 18 N -0.618 5.618 19 C 0.105 3.895 20 C -0.137 4.137 21 C -0.120 4.120 22 C -0.135 4.135 23 C 0.110 3.890 24 C 0.056 3.944 25 H 0.265 0.735 26 H 0.382 0.618 27 H 0.067 0.933 28 H 0.064 0.936 29 H 0.033 0.967 30 H 0.063 0.937 31 H 0.039 0.961 32 H 0.075 0.925 33 H 0.101 0.899 34 H 0.091 0.909 35 H 0.069 0.931 36 H 0.091 0.909 37 H 0.068 0.932 38 H 0.076 0.924 39 H 0.064 0.936 40 H 0.064 0.936 41 H 0.066 0.934 42 H 0.073 0.927 43 H 0.091 0.909 44 H 0.064 0.936 45 H 0.037 0.963 46 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.647 -18.143 12.559 22.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.135 4.135 3 Si 0.728 3.272 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.564 4.564 8 H 0.081 0.919 9 C 0.202 3.798 10 O -0.404 6.404 11 C -0.155 4.155 12 C -0.099 4.099 13 N -0.240 5.240 14 C -0.066 4.066 15 C -0.171 4.171 16 C 0.307 3.693 17 O -0.417 6.417 18 N -0.353 5.353 19 C -0.018 4.018 20 C -0.175 4.175 21 C -0.157 4.157 22 C -0.173 4.173 23 C -0.013 4.013 24 C -0.072 4.072 25 H 0.075 0.925 26 H 0.233 0.767 27 H 0.086 0.914 28 H 0.083 0.917 29 H 0.051 0.949 30 H 0.081 0.919 31 H 0.057 0.943 32 H 0.093 0.907 33 H 0.119 0.881 34 H 0.110 0.890 35 H 0.088 0.912 36 H 0.109 0.891 37 H 0.087 0.913 38 H 0.094 0.906 39 H 0.083 0.917 40 H 0.082 0.918 41 H 0.085 0.915 42 H 0.092 0.908 43 H 0.110 0.890 44 H 0.082 0.918 45 H 0.055 0.945 46 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 2.318 -18.625 12.227 22.401 hybrid contribution -0.524 1.090 -0.271 1.239 sum 1.795 -17.536 11.956 21.300 Atomic orbital electron populations 1.69671 1.05929 1.27200 1.51228 1.25024 0.95007 0.99455 0.93992 0.86407 0.80188 0.83070 0.77538 1.19666 1.20968 1.20962 1.21742 0.93566 0.90584 1.50475 0.91934 1.19375 0.86477 0.91573 0.82410 1.86104 1.51863 1.54854 1.47574 1.22994 1.00727 0.91437 1.00375 1.23371 0.88458 0.99108 0.98949 1.64744 1.22470 1.05654 1.31171 1.21930 1.01970 0.88690 0.94057 1.21619 1.04302 0.90164 1.01050 1.20912 0.75359 0.89177 0.83862 1.90687 1.49330 1.77855 1.23872 1.48156 1.72775 1.07568 1.06791 1.21873 0.98603 0.99026 0.82295 1.22005 0.98870 0.95563 1.01059 1.21517 1.01929 0.95845 0.96457 1.21922 0.99443 0.99872 0.96072 1.21559 0.97562 0.79685 1.02467 1.22824 1.00478 0.95014 0.88847 0.92492 0.76707 0.91388 0.91718 0.94888 0.91875 0.94306 0.90669 0.88126 0.89038 0.91235 0.89077 0.91315 0.90589 0.91717 0.91772 0.91500 0.90849 0.89042 0.91752 0.94476 0.90266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.21 10.88 55.43 0.60 -23.61 16 2 C 0.07 1.78 5.26 -17.82 -0.09 1.69 16 3 Si 0.90 20.91 29.54 -169.99 -5.02 15.89 16 4 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 5 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 6 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.53 -14.30 8.11 -34.44 -0.28 -14.58 16 8 H 0.06 1.71 7.34 -52.49 -0.39 1.32 16 9 C 0.24 6.13 0.99 -90.42 -0.09 6.04 16 10 O -0.59 -15.91 12.92 -35.23 -0.46 -16.36 16 11 C -0.12 -2.72 5.42 -24.78 -0.13 -2.85 16 12 C 0.03 0.56 5.92 -1.81 -0.01 0.55 16 13 N -0.52 -10.10 5.25 -230.35 -1.21 -11.31 16 14 C 0.06 1.08 3.99 -3.82 -0.02 1.06 16 15 C -0.13 -1.74 4.14 -27.88 -0.12 -1.86 16 16 C 0.52 7.18 7.70 -10.99 -0.08 7.10 16 17 O -0.54 -9.53 15.39 5.56 0.09 -9.44 16 18 N -0.62 -6.56 2.97 -172.47 -0.51 -7.07 16 19 C 0.11 0.81 6.37 -3.49 -0.02 0.78 16 20 C -0.14 -0.89 6.10 -26.39 -0.16 -1.05 16 21 C -0.12 -0.74 5.88 -26.69 -0.16 -0.89 16 22 C -0.13 -0.99 6.08 -26.59 -0.16 -1.15 16 23 C 0.11 1.03 6.43 -3.69 -0.02 1.00 16 24 C 0.06 1.26 6.13 -2.76 -0.02 1.25 16 25 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 26 H 0.38 10.30 7.18 45.56 0.33 10.63 16 27 H 0.07 1.66 7.86 -51.93 -0.41 1.25 16 28 H 0.06 1.56 8.02 -51.93 -0.42 1.15 16 29 H 0.03 0.65 7.81 -51.93 -0.41 0.24 16 30 H 0.06 1.06 7.80 -51.93 -0.40 0.66 16 31 H 0.04 0.72 7.79 -51.93 -0.40 0.32 16 32 H 0.07 1.32 8.04 -51.93 -0.42 0.91 16 33 H 0.10 1.21 7.93 -51.93 -0.41 0.80 16 34 H 0.09 1.11 6.93 -51.93 -0.36 0.75 16 35 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 36 H 0.09 0.67 5.93 -51.93 -0.31 0.36 16 37 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 38 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.09 1.03 7.01 -51.93 -0.36 0.66 16 44 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.04 0.85 7.59 -51.93 -0.39 0.46 16 46 H 0.08 1.80 7.39 -51.93 -0.38 1.41 16 LS Contribution 354.83 15.07 5.35 5.35 Total: -1.00 -30.29 354.83 -9.78 -40.07 By element: Atomic # 1 Polarization: 16.66 SS G_CDS: -7.25 Total: 9.41 kcal Atomic # 6 Polarization: -1.55 SS G_CDS: -1.37 Total: -2.91 kcal Atomic # 7 Polarization: -40.88 SS G_CDS: -1.12 Total: -42.00 kcal Atomic # 8 Polarization: -25.44 SS G_CDS: -0.37 Total: -25.81 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -30.29 -9.78 -40.07 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592146162.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.703 kcal (2) G-P(sol) polarization free energy of solvation -30.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds