Wall clock time and date at job start Tue Mar 31 2020 03:16:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.53006 * 109.47127 * 120.00347 * 2 1 3 5 5 N 1.46497 * 109.47188 * 239.99790 * 2 1 3 6 6 N 1.28786 * 125.45150 * 0.03127 * 5 2 1 7 7 N 1.28996 * 108.73147 * 179.97438 * 6 5 2 8 8 C 1.33320 * 107.35081 * 359.97438 * 7 6 5 9 9 C 1.50703 * 126.54744 * 180.02562 * 8 7 6 10 10 N 1.46502 * 109.46951 * 89.97785 * 9 8 7 11 11 C 1.34772 * 119.99900 * 180.02562 * 10 9 8 12 12 O 1.21590 * 120.00332 * 0.02562 * 11 10 9 13 13 N 1.34781 * 120.00183 * 179.97438 * 11 10 9 14 14 C 1.46500 * 120.00160 * 179.97438 * 13 11 10 15 15 C 1.52998 * 109.47090 * 180.02562 * 14 13 11 16 16 C 1.50698 * 109.47141 * 179.97438 * 15 14 13 17 17 H 1.08000 * 120.00136 * 0.02562 * 16 15 14 18 18 C 1.37878 * 120.00023 * 179.97438 * 16 15 14 19 19 N 1.31516 * 119.99967 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 120.00150 * 179.97438 * 18 16 15 21 21 H 1.48508 * 109.46816 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.47061 * 120.00185 * 20 18 16 23 23 H 1.48499 * 109.47409 * 240.00622 * 20 18 16 24 24 N 1.28881 * 125.45322 * 179.71586 * 5 2 1 25 25 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 26 26 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 27 27 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 29 29 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 30 30 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 31 31 H 1.08993 * 109.46955 * 60.00011 * 4 2 1 32 32 H 1.09000 * 109.47050 * 179.97438 * 4 2 1 33 33 H 1.09001 * 109.47002 * 299.99574 * 4 2 1 34 34 H 1.08996 * 109.46784 * 209.97890 * 9 8 7 35 35 H 1.09005 * 109.46889 * 329.97924 * 9 8 7 36 36 H 0.97004 * 120.00025 * 0.02562 * 10 9 8 37 37 H 0.96998 * 119.99426 * 0.02562 * 13 11 10 38 38 H 1.09004 * 109.46601 * 300.00389 * 14 13 11 39 39 H 1.08995 * 109.46627 * 59.99906 * 14 13 11 40 40 H 1.09003 * 109.46643 * 300.00117 * 15 14 13 41 41 H 1.08999 * 109.47129 * 59.99663 * 15 14 13 42 42 H 0.96998 * 119.99894 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 7 2.0183 -0.6906 -1.1961 6 7 1.2782 -1.2172 -2.1091 7 7 2.0399 -1.7374 -3.0109 8 6 3.3017 -1.5220 -2.6381 9 6 4.5420 -1.9492 -3.3799 10 7 4.9431 -0.8912 -4.3106 11 6 6.0332 -1.0537 -5.0862 12 8 6.6835 -2.0785 -5.0140 13 7 6.4019 -0.0807 -5.9428 14 6 7.5872 -0.2571 -6.7856 15 6 7.7821 0.9846 -7.6580 16 6 9.0017 0.8034 -8.5245 17 1 9.5797 -0.1066 -8.4597 18 6 9.3789 1.7989 -9.4007 19 7 8.6747 2.9068 -9.4799 20 14 10.8911 1.5746 -10.4742 21 1 11.5034 0.2505 -10.1962 22 1 10.4980 1.6473 -11.9044 23 1 11.8736 2.6473 -10.1757 24 7 3.2573 -0.8636 -1.5060 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.6768 1.9562 0.8900 29 1 3.1300 1.4424 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 -1.7489 1.2492 32 1 3.1300 -0.7217 1.2490 33 1 1.6767 -0.2075 2.1393 34 1 5.3468 -2.1309 -2.6676 35 1 4.3358 -2.8636 -3.9362 36 1 4.4241 -0.0738 -4.3685 37 1 5.8829 0.7367 -6.0007 38 1 8.4643 -0.3983 -6.1540 39 1 7.4533 -1.1316 -7.4222 40 1 6.9049 1.1261 -8.2895 41 1 7.9160 1.8588 -7.0210 42 1 8.9399 3.6069 -10.0966 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594235824.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:16:46 Heat of formation + Delta-G solvation = 84.542730 kcal Electronic energy + Delta-G solvation = -23016.766992 eV Core-core repulsion = 19455.980619 eV Total energy + Delta-G solvation = -3560.786373 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 296.170 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -44.66800 -39.57332 -38.14924 -35.45271 -34.54735 -33.70436 -32.87798 -32.33207 -29.68455 -28.29581 -28.17316 -27.20471 -24.90933 -24.50001 -22.41113 -21.07274 -20.98469 -20.57683 -18.29689 -17.57472 -17.36885 -16.37821 -16.00477 -15.41386 -14.97212 -14.76705 -14.62545 -14.47232 -14.19759 -13.82482 -13.72645 -13.37577 -13.29020 -13.11499 -12.93623 -12.61954 -12.47026 -12.26796 -12.20386 -12.11102 -11.68990 -11.17562 -11.16605 -11.15191 -11.02536 -10.59884 -10.59260 -10.30037 -9.92703 -9.53751 -9.22130 -9.09619 -8.47025 -8.23738 -6.06857 -4.09198 0.94230 1.48233 1.73928 3.10613 3.30636 3.38179 3.43622 3.48185 3.57884 3.77783 3.90644 4.01206 4.28081 4.42054 4.69267 4.78508 4.81287 4.84734 4.97689 5.01517 5.04024 5.13451 5.30414 5.32233 5.38132 5.46431 5.52398 5.55427 5.64834 5.92185 6.31085 6.43391 6.44239 6.80851 7.01313 7.19307 7.59531 7.66454 7.92702 8.10494 8.27718 8.41771 8.94218 8.99478 9.55476 11.04907 Molecular weight = 296.17amu Principal moments of inertia in cm(-1) A = 0.031131 B = 0.002228 C = 0.002157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.201226 B =12564.421504 C =12977.658355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.178 3.822 3 C -0.160 4.160 4 C -0.159 4.159 5 N -0.130 5.130 6 N -0.062 5.062 7 N -0.271 5.271 8 C 0.150 3.850 9 C 0.244 3.756 10 N -0.749 5.749 11 C 0.704 3.296 12 O -0.595 6.595 13 N -0.736 5.736 14 C 0.140 3.860 15 C 0.012 3.988 16 C -0.519 4.519 17 H 0.061 0.939 18 C 0.057 3.943 19 N -0.895 5.895 20 Si 0.897 3.103 21 H -0.271 1.271 22 H -0.284 1.284 23 H -0.284 1.284 24 N -0.288 5.288 25 H 0.076 0.924 26 H 0.089 0.911 27 H 0.075 0.925 28 H 0.090 0.910 29 H 0.078 0.922 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.078 0.922 33 H 0.090 0.910 34 H 0.095 0.905 35 H 0.099 0.901 36 H 0.396 0.604 37 H 0.393 0.607 38 H 0.055 0.945 39 H 0.055 0.945 40 H 0.022 0.978 41 H 0.022 0.978 42 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.433 -3.242 23.668 30.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.097 3.903 3 C -0.218 4.218 4 C -0.217 4.217 5 N -0.044 5.044 6 N -0.054 5.054 7 N -0.142 5.142 8 C -0.133 4.133 9 C 0.116 3.884 10 N -0.407 5.407 11 C 0.404 3.596 12 O -0.473 6.473 13 N -0.389 5.389 14 C 0.017 3.983 15 C -0.026 4.026 16 C -0.558 4.558 17 H 0.079 0.921 18 C -0.144 4.144 19 N -0.534 5.534 20 Si 0.725 3.275 21 H -0.195 1.195 22 H -0.210 1.210 23 H -0.210 1.210 24 N -0.139 5.139 25 H 0.095 0.905 26 H 0.108 0.892 27 H 0.094 0.906 28 H 0.109 0.891 29 H 0.097 0.903 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.097 0.903 33 H 0.109 0.891 34 H 0.113 0.887 35 H 0.117 0.883 36 H 0.229 0.771 37 H 0.226 0.774 38 H 0.073 0.927 39 H 0.074 0.926 40 H 0.041 0.959 41 H 0.040 0.960 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -18.455 -3.961 23.771 30.353 hybrid contribution 0.705 0.788 -0.754 1.298 sum -17.750 -3.173 23.017 29.239 Atomic orbital electron populations 1.22099 0.89989 1.04633 1.04398 1.21438 0.96500 0.92833 0.79534 1.22248 1.03470 0.91927 1.04177 1.22242 1.03418 1.01049 0.95029 1.50590 1.01144 1.34603 1.18042 1.78972 1.21918 1.08979 0.95566 1.75926 1.00763 1.18156 1.19357 1.25614 0.95691 0.99760 0.92205 1.19087 0.87961 0.90734 0.90595 1.44960 1.30728 1.21259 1.43800 1.15907 0.80309 0.84211 0.79172 1.90905 1.55798 1.28642 1.71968 1.45519 1.32200 1.19164 1.42065 1.21617 0.83973 1.01031 0.91640 1.19337 0.97716 0.91407 0.94099 1.21096 1.10625 1.02849 1.21186 0.92110 1.25006 0.97122 0.95131 0.97145 1.69969 1.39313 1.06717 1.37399 0.86452 0.82684 0.78272 0.80130 1.19541 1.20973 1.20981 1.74653 1.03248 1.19021 1.16945 0.90525 0.89182 0.90587 0.89083 0.90256 0.91276 0.91384 0.90300 0.89084 0.88724 0.88331 0.77125 0.77351 0.92665 0.92620 0.95940 0.95979 0.92945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.62 7.91 37.16 0.29 -0.33 16 2 C 0.18 1.01 1.30 -131.82 -0.17 0.84 16 3 C -0.16 -0.75 8.66 37.15 0.32 -0.42 16 4 C -0.16 -0.68 8.67 37.16 0.32 -0.36 16 5 N -0.13 -1.26 3.73 0.48 0.00 -1.25 16 6 N -0.06 -0.72 12.24 60.35 0.74 0.02 16 7 N -0.27 -3.55 12.50 32.45 0.41 -3.15 16 8 C 0.15 1.82 7.74 -156.62 -1.21 0.60 16 9 C 0.24 3.01 6.30 -5.19 -0.03 2.98 16 10 N -0.75 -10.21 5.55 -66.41 -0.37 -10.58 16 11 C 0.70 12.52 8.57 -86.92 -0.74 11.78 16 12 O -0.59 -12.73 16.34 5.29 0.09 -12.64 16 13 N -0.74 -13.29 5.56 -65.23 -0.36 -13.65 16 14 C 0.14 3.04 5.61 -4.04 -0.02 3.02 16 15 C 0.01 0.30 5.09 -27.88 -0.14 0.16 16 16 C -0.52 -14.51 9.11 -34.44 -0.31 -14.83 16 17 H 0.06 1.67 7.74 -52.49 -0.41 1.26 16 18 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 19 N -0.89 -26.35 13.29 55.43 0.74 -25.61 16 20 Si 0.90 21.55 29.54 -169.99 -5.02 16.53 16 21 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 22 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 23 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 24 N -0.29 -3.21 11.83 32.47 0.38 -2.83 16 25 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 26 H 0.09 0.13 8.14 -51.93 -0.42 -0.29 16 27 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 28 H 0.09 0.19 8.14 -51.93 -0.42 -0.24 16 29 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 32 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.09 0.15 8.14 -51.93 -0.42 -0.27 16 34 H 0.09 1.14 8.14 -51.93 -0.42 0.71 16 35 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 36 H 0.40 4.68 8.48 -40.82 -0.35 4.33 16 37 H 0.39 6.18 8.49 -40.82 -0.35 5.83 16 38 H 0.05 1.24 8.14 -51.93 -0.42 0.82 16 39 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 40 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 361.44 15.07 5.45 5.45 Total: -1.00 -34.31 361.44 -6.33 -40.63 By element: Atomic # 1 Polarization: 8.68 SS G_CDS: -6.57 Total: 2.11 kcal Atomic # 6 Polarization: 6.76 SS G_CDS: -1.80 Total: 4.97 kcal Atomic # 7 Polarization: -58.58 SS G_CDS: 1.54 Total: -57.05 kcal Atomic # 8 Polarization: -12.73 SS G_CDS: 0.09 Total: -12.64 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -34.31 -6.33 -40.63 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594235824.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.176 kcal (2) G-P(sol) polarization free energy of solvation -34.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.633 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds