Wall clock time and date at job start Tue Mar 31 2020 03:16:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.53006 * 109.47127 * 120.00347 * 2 1 3 5 5 N 1.46497 * 109.47188 * 239.99790 * 2 1 3 6 6 N 1.28786 * 125.45150 * 0.03127 * 5 2 1 7 7 N 1.28996 * 108.73147 * 179.97438 * 6 5 2 8 8 C 1.33320 * 107.35081 * 359.97438 * 7 6 5 9 9 C 1.50703 * 126.54744 * 180.02562 * 8 7 6 10 10 N 1.46502 * 109.46951 * 89.97785 * 9 8 7 11 11 C 1.34772 * 119.99900 * 180.02562 * 10 9 8 12 12 O 1.21590 * 120.00332 * 0.02562 * 11 10 9 13 13 N 1.34781 * 120.00183 * 179.97438 * 11 10 9 14 14 C 1.46500 * 120.00160 * 179.97438 * 13 11 10 15 15 C 1.52998 * 109.47090 * 180.02562 * 14 13 11 16 16 C 1.50698 * 109.47141 * 179.97438 * 15 14 13 17 17 H 1.08000 * 120.00136 * 0.02562 * 16 15 14 18 18 C 1.37878 * 120.00023 * 179.97438 * 16 15 14 19 19 N 1.31516 * 119.99967 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 120.00150 * 179.97438 * 18 16 15 21 21 H 1.48508 * 109.46816 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.47061 * 120.00185 * 20 18 16 23 23 H 1.48499 * 109.47409 * 240.00622 * 20 18 16 24 24 N 1.28881 * 125.45322 * 179.71586 * 5 2 1 25 25 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 26 26 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 27 27 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 29 29 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 30 30 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 31 31 H 1.08993 * 109.46955 * 60.00011 * 4 2 1 32 32 H 1.09000 * 109.47050 * 179.97438 * 4 2 1 33 33 H 1.09001 * 109.47002 * 299.99574 * 4 2 1 34 34 H 1.08996 * 109.46784 * 209.97890 * 9 8 7 35 35 H 1.09005 * 109.46889 * 329.97924 * 9 8 7 36 36 H 0.97004 * 120.00025 * 0.02562 * 10 9 8 37 37 H 0.96998 * 119.99426 * 0.02562 * 13 11 10 38 38 H 1.09004 * 109.46601 * 300.00389 * 14 13 11 39 39 H 1.08995 * 109.46627 * 59.99906 * 14 13 11 40 40 H 1.09003 * 109.46643 * 300.00117 * 15 14 13 41 41 H 1.08999 * 109.47129 * 59.99663 * 15 14 13 42 42 H 0.96998 * 119.99894 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 7 2.0183 -0.6906 -1.1961 6 7 1.2782 -1.2172 -2.1091 7 7 2.0399 -1.7374 -3.0109 8 6 3.3017 -1.5220 -2.6381 9 6 4.5420 -1.9492 -3.3799 10 7 4.9431 -0.8912 -4.3106 11 6 6.0332 -1.0537 -5.0862 12 8 6.6835 -2.0785 -5.0140 13 7 6.4019 -0.0807 -5.9428 14 6 7.5872 -0.2571 -6.7856 15 6 7.7821 0.9846 -7.6580 16 6 9.0017 0.8034 -8.5245 17 1 9.5797 -0.1066 -8.4597 18 6 9.3789 1.7989 -9.4007 19 7 8.6747 2.9068 -9.4799 20 14 10.8911 1.5746 -10.4742 21 1 11.5034 0.2505 -10.1962 22 1 10.4980 1.6473 -11.9044 23 1 11.8736 2.6473 -10.1757 24 7 3.2573 -0.8636 -1.5060 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.6768 1.9562 0.8900 29 1 3.1300 1.4424 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 -1.7489 1.2492 32 1 3.1300 -0.7217 1.2490 33 1 1.6767 -0.2075 2.1393 34 1 5.3468 -2.1309 -2.6676 35 1 4.3358 -2.8636 -3.9362 36 1 4.4241 -0.0738 -4.3685 37 1 5.8829 0.7367 -6.0007 38 1 8.4643 -0.3983 -6.1540 39 1 7.4533 -1.1316 -7.4222 40 1 6.9049 1.1261 -8.2895 41 1 7.9160 1.8588 -7.0210 42 1 8.9399 3.6069 -10.0966 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594235824.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:16:46 Heat of formation + Delta-G solvation = 58.974316 kcal Electronic energy + Delta-G solvation = -23017.875722 eV Core-core repulsion = 19455.980619 eV Total energy + Delta-G solvation = -3561.895103 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 296.170 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -45.53027 -41.01776 -38.70192 -36.88789 -36.05426 -34.81832 -34.54732 -33.36626 -31.47829 -28.95854 -28.51753 -28.13581 -26.43411 -25.66299 -23.45848 -22.83204 -22.04491 -21.66454 -19.68349 -18.49111 -18.35491 -17.99411 -17.31502 -16.81681 -16.48495 -15.95979 -15.49119 -15.39299 -15.19587 -15.09026 -15.03894 -14.42974 -14.27478 -14.26673 -13.69421 -13.45884 -13.22722 -13.18607 -12.98130 -12.92498 -12.83990 -12.59258 -12.49450 -12.23670 -12.19160 -12.01661 -11.99373 -11.69699 -11.55218 -11.37200 -11.12374 -10.60089 -10.43348 -9.78776 -8.22670 -6.32579 0.09385 0.73060 0.85804 1.42539 1.43448 1.56792 1.84205 2.12642 2.42674 2.62802 3.05693 3.12354 3.34421 3.51462 3.55561 3.65592 4.14874 4.37454 4.44412 4.48866 4.52120 4.53281 4.56290 4.58114 4.61463 4.69777 4.72832 4.73835 4.89723 5.03427 5.12158 5.22264 5.24310 5.27921 5.32312 5.52270 5.61711 5.79344 5.93428 6.18753 6.81135 7.02696 7.21958 7.36654 7.52873 8.89564 Molecular weight = 296.17amu Principal moments of inertia in cm(-1) A = 0.031131 B = 0.002228 C = 0.002157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.201226 B =12564.421504 C =12977.658355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.162 3.838 3 C -0.156 4.156 4 C -0.155 4.155 5 N -0.115 5.115 6 N -0.071 5.071 7 N -0.297 5.297 8 C 0.145 3.855 9 C 0.247 3.753 10 N -0.731 5.731 11 C 0.707 3.293 12 O -0.630 6.630 13 N -0.732 5.732 14 C 0.160 3.840 15 C 0.022 3.978 16 C -0.543 4.543 17 H 0.061 0.939 18 C 0.005 3.995 19 N -0.928 5.928 20 Si 0.966 3.034 21 H -0.264 1.264 22 H -0.278 1.278 23 H -0.277 1.277 24 N -0.291 5.291 25 H 0.066 0.934 26 H 0.124 0.876 27 H 0.068 0.932 28 H 0.124 0.876 29 H 0.065 0.935 30 H 0.058 0.942 31 H 0.060 0.940 32 H 0.066 0.934 33 H 0.124 0.876 34 H 0.100 0.900 35 H 0.098 0.902 36 H 0.407 0.593 37 H 0.406 0.594 38 H 0.047 0.953 39 H 0.046 0.954 40 H 0.008 0.992 41 H 0.009 0.991 42 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.896 -2.837 25.062 31.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.083 3.917 3 C -0.215 4.215 4 C -0.213 4.213 5 N -0.031 5.031 6 N -0.063 5.063 7 N -0.167 5.167 8 C -0.137 4.137 9 C 0.120 3.880 10 N -0.389 5.389 11 C 0.407 3.593 12 O -0.511 6.511 13 N -0.386 5.386 14 C 0.036 3.964 15 C -0.015 4.015 16 C -0.582 4.582 17 H 0.079 0.921 18 C -0.194 4.194 19 N -0.568 5.568 20 Si 0.791 3.209 21 H -0.189 1.189 22 H -0.203 1.203 23 H -0.202 1.202 24 N -0.142 5.142 25 H 0.085 0.915 26 H 0.142 0.858 27 H 0.087 0.913 28 H 0.143 0.857 29 H 0.084 0.916 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.085 0.915 33 H 0.143 0.857 34 H 0.118 0.882 35 H 0.117 0.883 36 H 0.242 0.758 37 H 0.241 0.759 38 H 0.066 0.934 39 H 0.065 0.935 40 H 0.026 0.974 41 H 0.027 0.973 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -18.976 -3.538 25.192 31.738 hybrid contribution 0.747 0.711 -1.053 1.474 sum -18.230 -2.827 24.140 30.382 Atomic orbital electron populations 1.22152 0.88556 1.04525 1.05577 1.22057 0.97697 0.93293 0.78635 1.22279 1.02622 0.91234 1.05346 1.22275 1.02638 1.00984 0.95447 1.51123 1.00511 1.33243 1.18248 1.78913 1.21996 1.09426 0.95928 1.75891 1.01215 1.19226 1.20404 1.25441 0.95296 1.00393 0.92601 1.19093 0.88382 0.90149 0.90392 1.44753 1.29312 1.21993 1.42810 1.15899 0.80807 0.83390 0.79195 1.90883 1.57213 1.29985 1.73045 1.45213 1.31503 1.20008 1.41879 1.21116 0.85119 0.98874 0.91281 1.19143 0.96300 0.92269 0.93798 1.21503 1.11662 1.03039 1.21968 0.92116 1.25889 1.00228 0.94762 0.98483 1.70070 1.40973 1.07500 1.38224 0.85378 0.78844 0.78506 0.78203 1.18854 1.20333 1.20249 1.74630 1.04112 1.18900 1.16594 0.91538 0.85784 0.91329 0.85746 0.91551 0.92272 0.92055 0.91498 0.85736 0.88177 0.88347 0.75821 0.75887 0.93420 0.93525 0.97403 0.97306 0.92602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 7.91 71.98 0.57 -0.34 16 2 C 0.16 1.56 1.30 3.60 0.00 1.56 16 3 C -0.16 -1.15 8.66 71.98 0.62 -0.52 16 4 C -0.16 -0.99 8.67 71.98 0.62 -0.37 16 5 N -0.12 -2.13 3.73 -152.40 -0.57 -2.70 16 6 N -0.07 -1.62 12.24 37.02 0.45 -1.16 16 7 N -0.30 -7.74 12.50 -51.26 -0.64 -8.38 16 8 C 0.15 3.46 7.74 138.55 1.07 4.53 16 9 C 0.25 5.99 6.30 85.63 0.54 6.53 16 10 N -0.73 -19.45 5.55 -482.29 -2.68 -22.13 16 11 C 0.71 24.88 8.57 179.05 1.53 26.42 16 12 O -0.63 -26.91 16.34 -4.00 -0.07 -26.98 16 13 N -0.73 -26.25 5.56 -478.53 -2.66 -28.91 16 14 C 0.16 7.01 5.61 86.38 0.48 7.50 16 15 C 0.02 1.14 5.09 29.85 0.15 1.30 16 16 C -0.54 -30.56 9.11 25.60 0.23 -30.33 16 17 H 0.06 3.34 7.74 -2.91 -0.02 3.32 16 18 C 0.00 0.27 5.46 84.65 0.46 0.74 16 19 N -0.93 -54.81 13.29 21.45 0.28 -54.52 16 20 Si 0.97 43.97 29.54 68.60 2.03 45.99 16 21 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 22 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 23 H -0.28 -12.23 7.11 99.48 0.71 -11.53 16 24 N -0.29 -6.30 11.83 -51.20 -0.61 -6.90 16 25 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 26 H 0.12 -0.09 8.14 -2.39 -0.02 -0.11 16 27 H 0.07 0.54 8.14 -2.38 -0.02 0.52 16 28 H 0.12 0.07 8.14 -2.39 -0.02 0.05 16 29 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.06 0.56 8.14 -2.39 -0.02 0.55 16 31 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 32 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.12 -0.04 8.14 -2.39 -0.02 -0.06 16 34 H 0.10 2.35 8.14 -2.39 -0.02 2.33 16 35 H 0.10 2.43 8.14 -2.38 -0.02 2.41 16 36 H 0.41 9.24 8.48 -92.71 -0.79 8.45 16 37 H 0.41 12.56 8.49 -92.71 -0.79 11.77 16 38 H 0.05 2.16 8.14 -2.38 -0.02 2.14 16 39 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 40 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 41 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 42 H 0.27 14.68 8.31 -92.71 -0.77 13.90 16 Total: -1.00 -73.59 361.44 1.31 -72.28 By element: Atomic # 1 Polarization: 16.94 SS G_CDS: -0.54 Total: 16.41 kcal Atomic # 6 Polarization: 10.71 SS G_CDS: 6.30 Total: 17.01 kcal Atomic # 7 Polarization: -118.29 SS G_CDS: -6.41 Total: -124.71 kcal Atomic # 8 Polarization: -26.91 SS G_CDS: -0.07 Total: -26.98 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 45.99 kcal Total: -73.59 1.31 -72.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594235824.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.252 kcal (2) G-P(sol) polarization free energy of solvation -73.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.278 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds