Wall clock time and date at job start Tue Mar 31 2020 03:30:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31418 * 1 3 3 Si 1.86803 * 119.99606 * 2 1 4 4 H 1.48497 * 109.46656 * 239.99591 * 3 2 1 5 5 H 1.48499 * 109.47126 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.46736 * 120.00019 * 3 2 1 7 7 C 1.38943 * 119.99998 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00079 * 180.02562 * 7 2 1 9 9 N 1.37095 * 120.00257 * 359.97438 * 7 2 1 10 10 C 1.34775 * 120.00345 * 180.02562 * 9 7 2 11 11 O 1.21297 * 119.99662 * 359.97438 * 10 9 7 12 12 C 1.50703 * 120.00340 * 180.02562 * 10 9 7 13 13 N 1.46898 * 109.47292 * 179.97438 * 12 10 9 14 14 C 1.46847 * 110.99897 * 66.04550 * 13 12 10 15 15 C 1.53034 * 109.51345 * 174.16738 * 14 13 12 16 16 C 1.53099 * 109.29509 * 59.18740 * 15 14 13 17 17 C 1.53126 * 109.15071 * 302.33888 * 16 15 14 18 18 H 1.08994 * 109.50076 * 297.71308 * 17 16 15 19 19 C 1.52992 * 109.49999 * 177.59266 * 17 16 15 20 20 H 1.08999 * 109.48425 * 300.21717 * 19 17 16 21 21 C 1.53089 * 109.48493 * 60.25526 * 19 17 16 22 22 C 1.53176 * 109.16785 * 177.58898 * 21 19 17 23 23 C 1.53170 * 109.03628 * 303.02068 * 22 21 19 24 24 C 1.53094 * 109.16512 * 56.97710 * 23 22 21 25 25 O 1.42896 * 109.41551 * 302.39473 * 24 23 22 26 26 C 1.46854 * 110.99958 * 301.83688 * 13 12 10 27 27 H 0.96996 * 120.00315 * 0.02562 * 1 2 3 28 28 H 0.97001 * 119.99954 * 0.02562 * 9 7 2 29 29 H 1.09002 * 109.46720 * 60.00004 * 12 10 9 30 30 H 1.08995 * 109.47124 * 300.00478 * 12 10 9 31 31 H 1.09002 * 109.46481 * 294.17890 * 14 13 12 32 32 H 1.08994 * 109.46283 * 54.15743 * 14 13 12 33 33 H 1.09007 * 109.50453 * 179.12106 * 15 14 13 34 34 H 1.09009 * 109.50412 * 299.23146 * 15 14 13 35 35 H 1.08990 * 109.52931 * 182.43636 * 16 15 14 36 36 H 1.09001 * 109.52470 * 62.23762 * 16 15 14 37 37 H 1.08998 * 109.52117 * 297.50022 * 21 19 17 38 38 H 1.08999 * 109.52046 * 57.68315 * 21 19 17 39 39 H 1.09002 * 109.54414 * 183.14854 * 22 21 19 40 40 H 1.09003 * 109.61259 * 62.92831 * 22 21 19 41 41 H 1.09004 * 109.52380 * 297.07178 * 23 22 21 42 42 H 1.09000 * 109.52678 * 176.88664 * 23 22 21 43 43 H 1.09000 * 109.48089 * 182.40423 * 24 23 22 44 44 H 1.09000 * 109.47606 * 62.37745 * 24 23 22 45 45 H 1.08993 * 109.46229 * 305.85774 * 26 13 12 46 46 H 1.09008 * 109.45822 * 65.82829 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1018 1.6964 -1.2125 5 1 1.2830 2.7465 -0.0006 6 1 3.1018 1.6965 1.2125 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3235 -2.3906 0.0016 10 6 1.9973 -3.5578 0.0026 11 8 3.2103 -3.5577 0.0022 12 6 1.2439 -4.8629 0.0032 13 7 2.1985 -5.9795 0.0037 14 6 2.9635 -6.0172 1.2566 15 6 3.8399 -7.2714 1.2829 16 6 4.7908 -7.2494 0.0832 17 6 3.9703 -7.1611 -1.2066 18 1 3.3405 -8.0460 -1.2985 19 6 4.9143 -7.0781 -2.4077 20 1 5.5451 -6.1942 -2.3139 21 6 5.7935 -8.3305 -2.4538 22 6 6.6932 -8.2682 -3.6919 23 6 5.8164 -8.1273 -4.9399 24 6 4.9363 -6.8827 -4.7980 25 8 4.1482 -6.9911 -3.6109 26 6 3.0901 -5.9100 -1.1610 27 1 -0.4850 0.8400 -0.0004 28 1 0.3535 -2.3906 0.0016 29 1 0.6176 -4.9212 -0.8870 30 1 0.6168 -4.9201 0.8929 31 1 3.5951 -5.1313 1.3233 32 1 2.2755 -6.0371 2.1018 33 1 4.4193 -7.2913 2.2059 34 1 3.2080 -8.1581 1.2302 35 1 5.3869 -8.1617 0.0740 36 1 5.4491 -6.3837 0.1561 37 1 6.4110 -8.3752 -1.5567 38 1 5.1619 -9.2172 -2.5068 39 1 7.2820 -9.1828 -3.7612 40 1 7.3606 -7.4097 -3.6164 41 1 5.1852 -9.0099 -5.0432 42 1 6.4503 -8.0266 -5.8210 43 1 4.2797 -6.8011 -5.6642 44 1 5.5676 -5.9963 -4.7355 45 1 2.4941 -5.8518 -2.0717 46 1 3.7213 -5.0247 -1.0829 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595791448.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:30:03 Heat of formation + Delta-G solvation = -97.397169 kcal Electronic energy + Delta-G solvation = -25236.303618 eV Core-core repulsion = 21738.875331 eV Total energy + Delta-G solvation = -3497.428287 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.94975 -38.91443 -37.13060 -34.21834 -33.69259 -33.35141 -31.67424 -31.24008 -29.21471 -27.24829 -24.94471 -24.66742 -23.77531 -22.39048 -21.37553 -20.26073 -19.49723 -19.08231 -17.82162 -16.21782 -16.13612 -15.94683 -15.25549 -14.85811 -14.67850 -14.55093 -14.43497 -13.99965 -13.88437 -13.66385 -13.41108 -13.16002 -12.74703 -12.59569 -12.52079 -11.95761 -11.76177 -11.54317 -11.44959 -11.24013 -11.15957 -10.97828 -10.86122 -10.58886 -10.50072 -10.45213 -10.26142 -10.23177 -9.99750 -9.87261 -9.42634 -9.31580 -9.12067 -7.96901 -7.28623 -6.42940 -3.84310 3.17579 3.23974 3.28187 3.79668 3.87108 4.16308 4.35932 4.68844 4.73673 4.76840 4.91752 5.04712 5.12120 5.15340 5.23533 5.24852 5.27273 5.39903 5.49251 5.57605 5.67322 5.68737 5.76355 5.84462 5.86384 5.91421 5.94274 6.02638 6.05739 6.08504 6.12845 6.18373 6.21701 6.25878 6.37915 6.48462 6.55775 6.72514 6.93303 7.34984 7.52445 7.53205 7.63187 8.03921 8.59368 9.15513 9.52645 10.03790 10.73589 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.017558 B = 0.003805 C = 0.003403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1594.369238 B = 7357.048821 C = 8226.557660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.024 3.976 3 Si 0.930 3.070 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.274 1.274 7 C -0.302 4.302 8 H 0.101 0.899 9 N -0.557 5.557 10 C 0.408 3.592 11 O -0.593 6.593 12 C 0.042 3.958 13 N -0.515 5.515 14 C 0.040 3.960 15 C -0.110 4.110 16 C -0.112 4.112 17 C -0.070 4.070 18 H 0.076 0.924 19 C 0.098 3.902 20 H 0.057 0.943 21 C -0.149 4.149 22 C -0.123 4.123 23 C -0.156 4.156 24 C 0.060 3.940 25 O -0.373 6.373 26 C 0.044 3.956 27 H 0.273 0.727 28 H 0.393 0.607 29 H 0.088 0.912 30 H 0.086 0.914 31 H 0.066 0.934 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.063 0.937 35 H 0.059 0.941 36 H 0.063 0.937 37 H 0.074 0.926 38 H 0.070 0.930 39 H 0.064 0.936 40 H 0.062 0.938 41 H 0.069 0.931 42 H 0.069 0.931 43 H 0.091 0.909 44 H 0.048 0.952 45 H 0.068 0.932 46 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.044 -16.069 -4.581 18.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.178 4.178 3 Si 0.757 3.243 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.199 1.199 7 C -0.432 4.432 8 H 0.119 0.881 9 N -0.193 5.193 10 C 0.194 3.806 11 O -0.480 6.480 12 C -0.090 4.090 13 N -0.237 5.237 14 C -0.088 4.088 15 C -0.148 4.148 16 C -0.150 4.150 17 C -0.089 4.089 18 H 0.094 0.906 19 C 0.040 3.960 20 H 0.075 0.925 21 C -0.187 4.187 22 C -0.161 4.161 23 C -0.193 4.193 24 C -0.017 4.017 25 O -0.292 6.292 26 C -0.084 4.084 27 H 0.083 0.917 28 H 0.226 0.774 29 H 0.106 0.894 30 H 0.105 0.895 31 H 0.084 0.916 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.078 0.922 36 H 0.082 0.918 37 H 0.093 0.907 38 H 0.088 0.912 39 H 0.082 0.918 40 H 0.081 0.919 41 H 0.088 0.912 42 H 0.087 0.913 43 H 0.109 0.891 44 H 0.066 0.934 45 H 0.086 0.914 46 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 8.223 -16.339 -4.606 18.863 hybrid contribution 0.493 1.660 -0.040 1.732 sum 8.716 -14.679 -4.646 17.693 Atomic orbital electron populations 1.69604 1.05943 1.28338 1.50130 1.25273 0.95610 0.99751 0.97170 0.85935 0.78806 0.80541 0.79039 1.19922 1.20908 1.19921 1.19655 0.93323 0.82468 1.47743 0.88097 1.42056 1.09298 1.04910 1.63014 1.21158 0.88832 0.85992 0.84640 1.90381 1.13977 1.86896 1.56794 1.22027 0.95526 0.88151 1.03291 1.62412 1.18313 1.40058 1.02939 1.22213 0.96646 0.98206 0.91696 1.21504 0.97388 0.98597 0.97266 1.21600 0.97761 1.01402 0.94193 1.21106 0.95958 1.00033 0.91795 0.90556 1.22121 0.92563 0.96358 0.85008 0.92473 1.22243 0.98720 0.99401 0.98320 1.21595 0.97780 1.01979 0.94718 1.22191 0.99039 0.99837 0.98265 1.22526 0.94623 0.96196 0.88372 1.87963 1.33245 1.94284 1.13711 1.22346 0.95756 0.97698 0.92566 0.91748 0.77383 0.89372 0.89530 0.91558 0.92014 0.92016 0.91826 0.92233 0.91850 0.90729 0.91155 0.91774 0.91916 0.91198 0.91256 0.89100 0.93353 0.91375 0.89951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.56 13.05 55.50 0.72 -23.84 16 2 C 0.02 0.64 5.50 -17.47 -0.10 0.55 16 3 Si 0.93 21.10 29.55 -169.99 -5.02 16.08 16 4 H -0.27 -6.19 7.11 56.52 0.40 -5.78 16 5 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 6 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 7 C -0.30 -8.43 9.68 -14.94 -0.14 -8.57 16 8 H 0.10 2.95 7.16 -52.48 -0.38 2.57 16 9 N -0.56 -14.17 5.29 -10.96 -0.06 -14.23 16 10 C 0.41 9.55 7.20 -10.98 -0.08 9.48 16 11 O -0.59 -15.36 11.20 5.54 0.06 -15.30 16 12 C 0.04 0.78 5.86 -4.98 -0.03 0.75 16 13 N -0.51 -9.05 4.86 -236.11 -1.15 -10.20 16 14 C 0.04 0.68 5.10 -3.84 -0.02 0.66 16 15 C -0.11 -1.48 6.09 -26.66 -0.16 -1.64 16 16 C -0.11 -1.48 4.86 -26.62 -0.13 -1.61 16 17 C -0.07 -1.01 2.15 -90.54 -0.19 -1.21 16 18 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 19 C 0.10 1.31 2.22 -26.69 -0.06 1.25 16 20 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 21 C -0.15 -1.58 5.00 -26.59 -0.13 -1.71 16 22 C -0.12 -1.15 6.03 -26.55 -0.16 -1.31 16 23 C -0.16 -1.44 6.14 -26.59 -0.16 -1.60 16 24 C 0.06 0.68 6.84 37.21 0.25 0.93 16 25 O -0.37 -5.40 9.75 -35.23 -0.34 -5.74 16 26 C 0.04 0.79 4.10 -3.83 -0.02 0.77 16 27 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 28 H 0.39 9.63 7.90 -40.82 -0.32 9.30 16 29 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 30 H 0.09 1.46 8.06 -51.93 -0.42 1.04 16 31 H 0.07 1.34 6.00 -51.93 -0.31 1.03 16 32 H 0.06 0.98 8.06 -51.93 -0.42 0.56 16 33 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.06 0.82 8.14 -51.92 -0.42 0.39 16 35 H 0.06 0.65 6.64 -51.93 -0.34 0.31 16 36 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 37 H 0.07 0.72 6.64 -51.93 -0.34 0.38 16 38 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 44 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.07 1.28 7.69 -51.93 -0.40 0.88 16 46 H 0.08 1.77 5.36 -51.92 -0.28 1.49 16 LS Contribution 349.45 15.07 5.27 5.27 Total: -1.00 -29.95 349.45 -9.50 -39.45 By element: Atomic # 1 Polarization: 19.63 SS G_CDS: -7.85 Total: 11.79 kcal Atomic # 6 Polarization: -2.14 SS G_CDS: -1.13 Total: -3.27 kcal Atomic # 7 Polarization: -47.79 SS G_CDS: -0.48 Total: -48.27 kcal Atomic # 8 Polarization: -20.76 SS G_CDS: -0.28 Total: -21.04 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -29.95 -9.50 -39.45 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595791448.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.949 kcal (2) G-P(sol) polarization free energy of solvation -29.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds