Wall clock time and date at job start Tue Mar 31 2020 03:30:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31418 * 1 3 3 Si 1.86803 * 119.99606 * 2 1 4 4 H 1.48497 * 109.46656 * 239.99591 * 3 2 1 5 5 H 1.48499 * 109.47126 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.46736 * 120.00019 * 3 2 1 7 7 C 1.38943 * 119.99998 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00079 * 180.02562 * 7 2 1 9 9 N 1.37095 * 120.00257 * 359.97438 * 7 2 1 10 10 C 1.34775 * 120.00345 * 180.02562 * 9 7 2 11 11 O 1.21297 * 119.99662 * 359.97438 * 10 9 7 12 12 C 1.50703 * 120.00340 * 180.02562 * 10 9 7 13 13 N 1.46898 * 109.47292 * 179.97438 * 12 10 9 14 14 C 1.46847 * 110.99897 * 66.04550 * 13 12 10 15 15 C 1.53034 * 109.51345 * 174.16738 * 14 13 12 16 16 C 1.53099 * 109.29509 * 59.18740 * 15 14 13 17 17 C 1.53126 * 109.15071 * 302.33888 * 16 15 14 18 18 H 1.08994 * 109.50076 * 297.71308 * 17 16 15 19 19 C 1.52992 * 109.49999 * 177.59266 * 17 16 15 20 20 H 1.08999 * 109.48425 * 300.21717 * 19 17 16 21 21 C 1.53089 * 109.48493 * 60.25526 * 19 17 16 22 22 C 1.53176 * 109.16785 * 177.58898 * 21 19 17 23 23 C 1.53170 * 109.03628 * 303.02068 * 22 21 19 24 24 C 1.53094 * 109.16512 * 56.97710 * 23 22 21 25 25 O 1.42896 * 109.41551 * 302.39473 * 24 23 22 26 26 C 1.46854 * 110.99958 * 301.83688 * 13 12 10 27 27 H 0.96996 * 120.00315 * 0.02562 * 1 2 3 28 28 H 0.97001 * 119.99954 * 0.02562 * 9 7 2 29 29 H 1.09002 * 109.46720 * 60.00004 * 12 10 9 30 30 H 1.08995 * 109.47124 * 300.00478 * 12 10 9 31 31 H 1.09002 * 109.46481 * 294.17890 * 14 13 12 32 32 H 1.08994 * 109.46283 * 54.15743 * 14 13 12 33 33 H 1.09007 * 109.50453 * 179.12106 * 15 14 13 34 34 H 1.09009 * 109.50412 * 299.23146 * 15 14 13 35 35 H 1.08990 * 109.52931 * 182.43636 * 16 15 14 36 36 H 1.09001 * 109.52470 * 62.23762 * 16 15 14 37 37 H 1.08998 * 109.52117 * 297.50022 * 21 19 17 38 38 H 1.08999 * 109.52046 * 57.68315 * 21 19 17 39 39 H 1.09002 * 109.54414 * 183.14854 * 22 21 19 40 40 H 1.09003 * 109.61259 * 62.92831 * 22 21 19 41 41 H 1.09004 * 109.52380 * 297.07178 * 23 22 21 42 42 H 1.09000 * 109.52678 * 176.88664 * 23 22 21 43 43 H 1.09000 * 109.48089 * 182.40423 * 24 23 22 44 44 H 1.09000 * 109.47606 * 62.37745 * 24 23 22 45 45 H 1.08993 * 109.46229 * 305.85774 * 26 13 12 46 46 H 1.09008 * 109.45822 * 65.82829 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1018 1.6964 -1.2125 5 1 1.2830 2.7465 -0.0006 6 1 3.1018 1.6965 1.2125 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3235 -2.3906 0.0016 10 6 1.9973 -3.5578 0.0026 11 8 3.2103 -3.5577 0.0022 12 6 1.2439 -4.8629 0.0032 13 7 2.1985 -5.9795 0.0037 14 6 2.9635 -6.0172 1.2566 15 6 3.8399 -7.2714 1.2829 16 6 4.7908 -7.2494 0.0832 17 6 3.9703 -7.1611 -1.2066 18 1 3.3405 -8.0460 -1.2985 19 6 4.9143 -7.0781 -2.4077 20 1 5.5451 -6.1942 -2.3139 21 6 5.7935 -8.3305 -2.4538 22 6 6.6932 -8.2682 -3.6919 23 6 5.8164 -8.1273 -4.9399 24 6 4.9363 -6.8827 -4.7980 25 8 4.1482 -6.9911 -3.6109 26 6 3.0901 -5.9100 -1.1610 27 1 -0.4850 0.8400 -0.0004 28 1 0.3535 -2.3906 0.0016 29 1 0.6176 -4.9212 -0.8870 30 1 0.6168 -4.9201 0.8929 31 1 3.5951 -5.1313 1.3233 32 1 2.2755 -6.0371 2.1018 33 1 4.4193 -7.2913 2.2059 34 1 3.2080 -8.1581 1.2302 35 1 5.3869 -8.1617 0.0740 36 1 5.4491 -6.3837 0.1561 37 1 6.4110 -8.3752 -1.5567 38 1 5.1619 -9.2172 -2.5068 39 1 7.2820 -9.1828 -3.7612 40 1 7.3606 -7.4097 -3.6164 41 1 5.1852 -9.0099 -5.0432 42 1 6.4503 -8.0266 -5.8210 43 1 4.2797 -6.8011 -5.6642 44 1 5.5676 -5.9963 -4.7355 45 1 2.4941 -5.8518 -2.0717 46 1 3.7213 -5.0247 -1.0829 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595791448.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:30:02 Heat of formation + Delta-G solvation = -117.748660 kcal Electronic energy + Delta-G solvation = -25237.186125 eV Core-core repulsion = 21738.875331 eV Total energy + Delta-G solvation = -3498.310794 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.25323 -40.31262 -38.64505 -36.06333 -34.89744 -34.48624 -33.33510 -32.80025 -30.31896 -28.84516 -26.54896 -25.91710 -24.87097 -23.70785 -22.55589 -21.22428 -21.05830 -20.61636 -19.80790 -17.80942 -17.27557 -17.15933 -16.66432 -16.43249 -16.15086 -15.71696 -15.64288 -15.51593 -15.42404 -15.10053 -14.66177 -14.31153 -13.94844 -13.87592 -13.61617 -13.45192 -13.19646 -13.10702 -12.96680 -12.54307 -12.47862 -12.34287 -12.15652 -12.04390 -11.89016 -11.77250 -11.51951 -11.49018 -11.31858 -11.17167 -10.99799 -10.92689 -10.29444 -10.01371 -8.97549 -8.47812 -5.98497 1.35498 1.37770 1.48935 1.99336 2.26829 2.81575 2.99909 3.17320 3.25064 3.75738 3.86793 3.94630 3.99865 4.01916 4.08704 4.13454 4.28884 4.35110 4.41250 4.47210 4.51501 4.60840 4.63389 4.67762 4.74403 4.77535 4.87660 4.94490 4.95972 5.03421 5.04777 5.10240 5.14122 5.15839 5.20776 5.29322 5.33935 5.37348 5.40562 5.58185 5.90630 6.09516 6.17981 6.36166 6.56705 7.09017 7.52367 8.07642 8.67283 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.017558 B = 0.003805 C = 0.003403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1594.369238 B = 7357.048821 C = 8226.557660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.012 4.012 3 Si 0.992 3.008 4 H -0.273 1.273 5 H -0.269 1.269 6 H -0.271 1.271 7 C -0.335 4.335 8 H 0.077 0.923 9 N -0.570 5.570 10 C 0.408 3.592 11 O -0.620 6.620 12 C 0.048 3.952 13 N -0.504 5.504 14 C 0.038 3.962 15 C -0.104 4.104 16 C -0.108 4.108 17 C -0.063 4.063 18 H 0.083 0.917 19 C 0.097 3.903 20 H 0.035 0.965 21 C -0.142 4.142 22 C -0.124 4.124 23 C -0.149 4.149 24 C 0.050 3.950 25 O -0.400 6.400 26 C 0.051 3.949 27 H 0.278 0.722 28 H 0.396 0.604 29 H 0.103 0.897 30 H 0.110 0.890 31 H 0.026 0.974 32 H 0.073 0.927 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.093 0.907 36 H 0.043 0.957 37 H 0.086 0.914 38 H 0.075 0.925 39 H 0.085 0.915 40 H 0.059 0.941 41 H 0.072 0.928 42 H 0.088 0.912 43 H 0.100 0.900 44 H 0.041 0.959 45 H 0.053 0.947 46 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.589 -17.917 -4.570 20.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.212 4.212 3 Si 0.815 3.185 4 H -0.198 1.198 5 H -0.193 1.193 6 H -0.197 1.197 7 C -0.465 4.465 8 H 0.095 0.905 9 N -0.206 5.206 10 C 0.195 3.805 11 O -0.508 6.508 12 C -0.084 4.084 13 N -0.226 5.226 14 C -0.090 4.090 15 C -0.141 4.141 16 C -0.146 4.146 17 C -0.082 4.082 18 H 0.101 0.899 19 C 0.039 3.961 20 H 0.054 0.946 21 C -0.180 4.180 22 C -0.161 4.161 23 C -0.187 4.187 24 C -0.026 4.026 25 O -0.319 6.319 26 C -0.077 4.077 27 H 0.088 0.912 28 H 0.229 0.771 29 H 0.121 0.879 30 H 0.128 0.872 31 H 0.045 0.955 32 H 0.091 0.909 33 H 0.100 0.900 34 H 0.099 0.901 35 H 0.111 0.889 36 H 0.062 0.938 37 H 0.105 0.895 38 H 0.094 0.906 39 H 0.104 0.896 40 H 0.078 0.922 41 H 0.091 0.909 42 H 0.107 0.893 43 H 0.118 0.882 44 H 0.059 0.941 45 H 0.071 0.929 46 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 8.763 -18.208 -4.596 20.723 hybrid contribution 0.318 2.213 -0.071 2.237 sum 9.081 -15.995 -4.667 18.976 Atomic orbital electron populations 1.69668 1.06850 1.29430 1.50022 1.26046 0.96525 1.02430 0.96166 0.85009 0.77812 0.76744 0.78890 1.19846 1.19296 1.19662 1.19613 0.92613 0.84221 1.50069 0.90522 1.42129 1.09349 1.04978 1.64194 1.22148 0.88790 0.87082 0.82488 1.90394 1.15586 1.87600 1.57183 1.22133 0.95632 0.85534 1.05078 1.62532 1.18191 1.38601 1.03313 1.22279 0.96727 0.98495 0.91483 1.21509 0.97213 0.97132 0.98284 1.21597 0.97548 1.02136 0.93277 1.21070 0.95853 0.97987 0.93260 0.89902 1.22103 0.92323 0.97197 0.84473 0.94647 1.22190 0.98527 0.97596 0.99677 1.21631 0.97620 1.02923 0.93959 1.22150 0.98885 0.98502 0.99165 1.22741 0.95028 0.97291 0.87570 1.87915 1.34702 1.94542 1.14767 1.22196 0.95318 0.98103 0.92061 0.91216 0.77067 0.87924 0.87153 0.95520 0.90904 0.90045 0.90136 0.88899 0.93815 0.89523 0.90594 0.89640 0.92221 0.90919 0.89324 0.88196 0.94057 0.92886 0.94037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.43 13.05 21.66 0.28 -50.15 16 2 C -0.01 -0.63 5.50 84.92 0.47 -0.17 16 3 Si 0.99 43.56 29.55 68.60 2.03 45.59 16 4 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 5 H -0.27 -11.06 7.11 99.48 0.71 -10.36 16 6 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 7 C -0.34 -19.38 9.68 84.04 0.81 -18.57 16 8 H 0.08 4.71 7.16 -2.91 -0.02 4.69 16 9 N -0.57 -29.98 5.29 -306.98 -1.62 -31.60 16 10 C 0.41 19.79 7.20 87.66 0.63 20.42 16 11 O -0.62 -33.81 11.20 -3.08 -0.03 -33.84 16 12 C 0.05 1.79 5.86 85.56 0.50 2.29 16 13 N -0.50 -17.65 4.86 -900.92 -4.38 -22.03 16 14 C 0.04 1.27 5.10 86.32 0.44 1.71 16 15 C -0.10 -2.59 6.09 30.64 0.19 -2.40 16 16 C -0.11 -2.70 4.86 30.67 0.15 -2.55 16 17 C -0.06 -1.79 2.15 -10.74 -0.02 -1.81 16 18 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 19 C 0.10 2.59 2.22 30.62 0.07 2.66 16 20 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 21 C -0.14 -2.72 5.00 30.68 0.15 -2.57 16 22 C -0.12 -2.02 6.03 30.71 0.19 -1.84 16 23 C -0.15 -2.48 6.14 30.68 0.19 -2.29 16 24 C 0.05 1.12 6.84 72.01 0.49 1.61 16 25 O -0.40 -11.65 9.75 -148.98 -1.45 -13.11 16 26 C 0.05 1.89 4.10 86.32 0.35 2.24 16 27 H 0.28 14.30 8.31 -92.71 -0.77 13.53 16 28 H 0.40 19.91 7.90 -92.71 -0.73 19.18 16 29 H 0.10 3.54 8.14 -2.39 -0.02 3.52 16 30 H 0.11 3.61 8.06 -2.39 -0.02 3.59 16 31 H 0.03 1.11 6.00 -2.39 -0.01 1.09 16 32 H 0.07 2.23 8.06 -2.39 -0.02 2.21 16 33 H 0.08 1.74 8.14 -2.38 -0.02 1.72 16 34 H 0.08 1.79 8.14 -2.38 -0.02 1.77 16 35 H 0.09 1.73 6.64 -2.39 -0.02 1.71 16 36 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.09 1.44 6.64 -2.39 -0.02 1.42 16 38 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 39 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 40 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 41 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 42 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 43 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 44 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 45 H 0.05 2.07 7.69 -2.39 -0.02 2.05 16 46 H 0.04 1.90 5.36 -2.38 -0.01 1.88 16 Total: -1.00 -67.11 349.45 -0.34 -67.45 By element: Atomic # 1 Polarization: 38.72 SS G_CDS: 0.23 Total: 38.94 kcal Atomic # 6 Polarization: -5.86 SS G_CDS: 4.61 Total: -1.25 kcal Atomic # 7 Polarization: -98.06 SS G_CDS: -5.72 Total: -103.78 kcal Atomic # 8 Polarization: -45.46 SS G_CDS: -1.49 Total: -46.95 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.59 kcal Total: -67.11 -0.34 -67.45 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595791448.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.298 kcal (2) G-P(sol) polarization free energy of solvation -67.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds