Wall clock time and date at job start Tue Mar 31 2020 03:35:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.50706 * 109.52134 * 2 1 4 4 O 1.21277 * 119.99617 * 240.64961 * 3 2 1 5 5 N 1.34777 * 120.00239 * 60.65108 * 3 2 1 6 6 C 1.47074 * 120.88116 * 174.65340 * 5 3 2 7 7 C 1.53242 * 108.52228 * 231.20424 * 6 5 3 8 8 N 1.46900 * 109.34017 * 306.17322 * 7 6 5 9 9 C 1.46899 * 111.00010 * 187.25466 * 8 7 6 10 10 C 1.50700 * 109.47345 * 170.00101 * 9 8 7 11 11 H 1.07997 * 119.99859 * 359.97438 * 10 9 8 12 12 C 1.37874 * 119.99965 * 179.97438 * 10 9 8 13 13 N 1.31512 * 120.00196 * 359.97438 * 12 10 9 14 14 Si 1.86795 * 119.99888 * 180.02562 * 12 10 9 15 15 H 1.48502 * 109.47552 * 59.99641 * 14 12 10 16 16 H 1.48499 * 109.47116 * 299.99819 * 14 12 10 17 17 H 1.48500 * 109.47213 * 180.02562 * 14 12 10 18 18 C 1.46894 * 111.26922 * 63.10260 * 8 7 6 19 19 C 1.47084 * 120.87951 * 354.67570 * 5 3 2 20 20 C 1.53179 * 109.52488 * 120.12122 * 2 1 3 21 21 C 1.53305 * 108.97101 * 176.89022 * 20 2 1 22 22 C 1.53095 * 109.19593 * 303.06112 * 21 20 2 23 23 O 1.42903 * 109.41241 * 57.60731 * 22 21 20 24 24 C 1.42907 * 114.09702 * 298.84057 * 23 22 21 25 25 H 1.09004 * 109.47092 * 69.75185 * 1 2 3 26 26 H 1.09002 * 109.47222 * 189.75149 * 1 2 3 27 27 H 1.09006 * 109.47456 * 309.75436 * 1 2 3 28 28 H 1.09003 * 109.62503 * 111.49471 * 6 5 3 29 29 H 1.08998 * 109.79246 * 351.01200 * 6 5 3 30 30 H 1.09005 * 109.49078 * 186.21412 * 7 6 5 31 31 H 1.08999 * 109.50949 * 66.14631 * 7 6 5 32 32 H 1.08998 * 109.47294 * 49.99817 * 9 8 7 33 33 H 1.09005 * 109.47018 * 290.00211 * 9 8 7 34 34 H 0.97004 * 120.00121 * 359.97438 * 13 12 10 35 35 H 1.09001 * 109.49401 * 56.85467 * 18 8 7 36 36 H 1.09001 * 109.49360 * 176.93594 * 18 8 7 37 37 H 1.08993 * 109.62811 * 248.50808 * 19 5 3 38 38 H 1.08999 * 109.62665 * 9.08823 * 19 5 3 39 39 H 1.09004 * 109.54673 * 296.82424 * 20 2 1 40 40 H 1.09009 * 109.53971 * 57.08273 * 20 2 1 41 41 H 1.09001 * 109.51004 * 183.14520 * 21 20 2 42 42 H 1.09004 * 109.55549 * 63.00272 * 21 20 2 43 43 H 1.08995 * 109.47850 * 297.62586 * 22 21 20 44 44 H 1.09001 * 109.49094 * 177.59770 * 22 21 20 45 45 H 1.09000 * 109.48021 * 301.17518 * 24 23 22 46 46 H 1.08998 * 109.48912 * 181.15304 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0335 1.4204 0.0000 4 8 2.7213 1.8199 -0.9155 5 7 1.7195 2.2468 1.0174 6 6 2.2943 3.5982 1.0971 7 6 2.8961 3.7897 2.4933 8 7 1.8776 3.4870 3.5077 9 6 2.3595 3.8228 4.8542 10 6 1.2174 3.7338 5.8333 11 1 0.2320 3.4560 5.4896 12 6 1.4306 4.0071 7.1678 13 7 2.6307 4.3449 7.5863 14 14 0.0150 3.8960 8.3815 15 1 -0.5306 2.5149 8.3808 16 1 -1.0521 4.8500 7.9860 17 1 0.5022 4.2356 9.7426 18 6 1.4543 2.0823 3.4352 19 6 0.7934 1.8208 2.0776 20 6 2.0419 -0.7245 1.2488 21 6 3.5728 -0.7854 1.1971 22 6 4.0056 -1.4793 -0.0971 23 8 3.4695 -0.7723 -1.2173 24 6 2.0416 -0.7242 -1.2479 25 1 -0.3633 0.3557 -0.9642 26 1 -0.3634 -1.0128 0.1741 27 1 -0.3634 0.6572 0.7901 28 1 1.5122 4.3391 0.9306 29 1 3.0735 3.7129 0.3436 30 1 3.2281 4.8216 2.6078 31 1 3.7454 3.1182 2.6189 32 1 2.7601 4.8365 4.8544 33 1 3.1428 3.1226 5.1449 34 1 3.3660 4.4014 6.9562 35 1 2.3235 1.4342 3.5474 36 1 0.7407 1.8757 4.2329 37 1 -0.1329 2.3907 2.0054 38 1 0.5811 0.7568 1.9726 39 1 1.7269 -0.1818 2.1401 40 1 1.6376 -1.7365 1.2746 41 1 3.9439 -1.3482 2.0537 42 1 3.9793 0.2257 1.2217 43 1 3.6337 -2.5039 -0.1021 44 1 5.0938 -1.4873 -0.1592 45 1 1.6440 -1.7389 -1.2680 46 1 1.7148 -0.1881 -2.1389 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602204565.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:35:44 Heat of formation + Delta-G solvation = -62.817498 kcal Electronic energy + Delta-G solvation = -26135.811128 eV Core-core repulsion = 22639.882328 eV Total energy + Delta-G solvation = -3495.928800 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.16526 -38.70952 -37.34974 -35.33114 -34.18968 -32.52248 -32.28517 -30.80565 -28.13181 -27.21073 -25.40338 -25.36501 -23.36244 -23.27444 -22.14949 -21.49733 -20.11466 -18.60013 -16.87632 -16.58537 -16.43686 -16.23618 -15.56852 -15.36739 -14.80314 -14.65021 -14.35828 -14.27556 -13.99212 -13.85020 -13.70466 -13.19105 -12.90696 -12.61386 -12.41076 -12.34158 -12.09440 -12.01381 -11.69430 -11.42889 -11.29672 -11.20614 -10.99624 -10.80639 -10.76033 -10.62241 -10.54608 -10.26681 -10.11323 -9.65677 -9.30366 -8.83715 -8.44994 -8.41958 -7.46132 -6.43608 -4.13604 2.75730 3.07922 3.39075 3.41862 3.60205 3.80130 4.26844 4.38988 4.44825 4.53643 4.64716 4.72771 4.80977 4.99813 5.13273 5.20580 5.22148 5.26251 5.32884 5.35442 5.40300 5.42508 5.51217 5.54703 5.57850 5.60734 5.67742 5.72651 5.76144 5.90027 5.94669 6.00688 6.04457 6.17705 6.34051 6.34581 6.64494 6.89967 6.98448 7.12290 7.54331 7.67482 7.85510 8.21543 8.32411 8.48424 8.78757 9.57582 10.95341 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.023997 B = 0.003982 C = 0.003899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.512572 B = 7030.242577 C = 7180.041710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.116 4.116 3 C 0.528 3.472 4 O -0.533 6.533 5 N -0.607 5.607 6 C 0.120 3.880 7 C 0.040 3.960 8 N -0.528 5.528 9 C 0.183 3.817 10 C -0.590 4.590 11 H 0.057 0.943 12 C 0.015 3.985 13 N -0.912 5.912 14 Si 1.072 2.928 15 H -0.288 1.288 16 H -0.287 1.287 17 H -0.283 1.283 18 C 0.050 3.950 19 C 0.089 3.911 20 C -0.125 4.125 21 C -0.158 4.158 22 C 0.059 3.941 23 O -0.364 6.364 24 C 0.090 3.910 25 H 0.064 0.936 26 H 0.069 0.931 27 H 0.082 0.918 28 H 0.071 0.929 29 H 0.087 0.913 30 H 0.079 0.921 31 H 0.025 0.975 32 H 0.021 0.979 33 H -0.020 1.020 34 H 0.267 0.733 35 H 0.024 0.976 36 H 0.097 0.903 37 H 0.075 0.925 38 H 0.102 0.898 39 H 0.089 0.911 40 H 0.075 0.925 41 H 0.077 0.923 42 H 0.070 0.930 43 H 0.048 0.952 44 H 0.092 0.908 45 H 0.055 0.945 46 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.155 -12.113 -14.382 19.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.120 4.120 3 C 0.316 3.684 4 O -0.409 6.409 5 N -0.341 5.341 6 C -0.003 4.003 7 C -0.089 4.089 8 N -0.252 5.252 9 C 0.058 3.942 10 C -0.629 4.629 11 H 0.076 0.924 12 C -0.189 4.189 13 N -0.548 5.548 14 Si 0.900 3.100 15 H -0.215 1.215 16 H -0.213 1.213 17 H -0.208 1.208 18 C -0.079 4.079 19 C -0.033 4.033 20 C -0.162 4.162 21 C -0.196 4.196 22 C -0.018 4.018 23 O -0.282 6.282 24 C 0.013 3.987 25 H 0.083 0.917 26 H 0.088 0.912 27 H 0.100 0.900 28 H 0.089 0.911 29 H 0.105 0.895 30 H 0.098 0.902 31 H 0.043 0.957 32 H 0.039 0.961 33 H -0.002 1.002 34 H 0.077 0.923 35 H 0.042 0.958 36 H 0.115 0.885 37 H 0.093 0.907 38 H 0.120 0.880 39 H 0.107 0.893 40 H 0.094 0.906 41 H 0.095 0.905 42 H 0.089 0.911 43 H 0.067 0.933 44 H 0.110 0.890 45 H 0.073 0.927 46 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -3.459 -11.322 -13.511 17.964 hybrid contribution 0.976 -0.689 -1.011 1.566 sum -2.483 -12.011 -14.522 19.009 Atomic orbital electron populations 1.22209 0.92044 1.03577 1.03866 1.21500 0.97731 0.93810 0.98912 1.20197 0.80041 0.86574 0.81610 1.90687 1.38474 1.76586 1.35142 1.48125 1.46316 1.15137 1.24531 1.21688 0.98640 0.82747 0.97207 1.22433 0.93471 1.01088 0.91923 1.61980 1.37950 1.19082 1.06230 1.19829 0.95525 0.94927 0.83913 1.21931 0.96022 1.51186 0.93749 0.92438 1.25854 1.01504 0.93771 0.97747 1.70800 1.00850 1.44620 1.38572 0.83494 0.74229 0.76430 0.75849 1.21463 1.21333 1.20824 1.22368 0.99588 0.89880 0.96077 1.22589 0.92912 1.00839 0.86981 1.22055 0.96058 1.00979 0.97101 1.22217 0.95986 1.02563 0.98800 1.22582 0.99188 0.94184 0.85857 1.88061 1.19574 1.76024 1.44546 1.22375 0.81627 0.98324 0.96419 0.91695 0.91176 0.89980 0.91079 0.89479 0.90216 0.95693 0.96054 1.00237 0.92309 0.95801 0.88452 0.90660 0.88030 0.89287 0.90589 0.90459 0.91122 0.93338 0.89025 0.92710 0.88486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.42 8.10 37.15 0.30 -1.12 16 2 C -0.12 -1.32 0.50 -155.53 -0.08 -1.40 16 3 C 0.53 7.99 5.26 -10.98 -0.06 7.93 16 4 O -0.53 -9.86 14.86 -10.87 -0.16 -10.02 16 5 N -0.61 -9.15 3.00 -172.46 -0.52 -9.67 16 6 C 0.12 1.91 6.57 -3.60 -0.02 1.89 16 7 C 0.04 0.72 5.62 -3.70 -0.02 0.70 16 8 N -0.53 -10.87 4.62 -235.76 -1.09 -11.96 16 9 C 0.18 4.59 4.04 -4.98 -0.02 4.57 16 10 C -0.59 -16.03 8.41 -34.44 -0.29 -16.32 16 11 H 0.06 1.54 7.13 -52.49 -0.37 1.17 16 12 C 0.02 0.42 5.46 -17.82 -0.10 0.33 16 13 N -0.91 -27.22 13.65 55.43 0.76 -26.46 16 14 Si 1.07 24.44 29.90 -169.99 -5.08 19.36 16 15 H -0.29 -6.20 7.11 56.52 0.40 -5.80 16 16 H -0.29 -6.28 7.11 56.52 0.40 -5.88 16 17 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 18 C 0.05 0.89 5.20 -3.70 -0.02 0.87 16 19 C 0.09 1.24 4.12 -3.60 -0.01 1.23 16 20 C -0.12 -1.31 4.48 -26.48 -0.12 -1.43 16 21 C -0.16 -1.81 5.87 -26.52 -0.16 -1.97 16 22 C 0.06 0.64 6.84 37.21 0.25 0.90 16 23 O -0.36 -5.02 9.84 -51.67 -0.51 -5.53 16 24 C 0.09 1.03 5.06 37.20 0.19 1.21 16 25 H 0.06 0.56 8.12 -51.93 -0.42 0.14 16 26 H 0.07 0.48 8.12 -51.93 -0.42 0.06 16 27 H 0.08 0.76 4.60 -51.93 -0.24 0.52 16 28 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 29 H 0.09 1.40 7.11 -51.93 -0.37 1.03 16 30 H 0.08 1.40 7.99 -51.93 -0.41 0.98 16 31 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.02 0.57 7.84 -51.93 -0.41 0.16 16 33 H -0.02 -0.53 7.99 -51.93 -0.41 -0.95 16 34 H 0.27 7.96 7.22 -40.82 -0.29 7.67 16 35 H 0.02 0.44 7.76 -51.93 -0.40 0.03 16 36 H 0.10 1.86 6.67 -51.93 -0.35 1.51 16 37 H 0.08 1.04 8.10 -51.93 -0.42 0.62 16 38 H 0.10 1.15 2.75 -51.93 -0.14 1.01 16 39 H 0.09 1.01 4.35 -51.93 -0.23 0.78 16 40 H 0.08 0.64 8.14 -51.92 -0.42 0.21 16 41 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.07 1.02 7.40 -51.93 -0.38 0.64 16 43 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 45 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 46 H 0.10 1.14 8.03 -51.93 -0.42 0.72 16 LS Contribution 340.90 15.07 5.14 5.14 Total: -1.00 -32.55 340.90 -9.07 -41.62 By element: Atomic # 1 Polarization: 7.60 SS G_CDS: -7.45 Total: 0.15 kcal Atomic # 6 Polarization: -2.48 SS G_CDS: -0.15 Total: -2.63 kcal Atomic # 7 Polarization: -47.24 SS G_CDS: -0.85 Total: -48.09 kcal Atomic # 8 Polarization: -14.87 SS G_CDS: -0.67 Total: -15.54 kcal Atomic # 14 Polarization: 24.44 SS G_CDS: -5.08 Total: 19.36 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -32.55 -9.07 -41.62 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602204565.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.200 kcal (2) G-P(sol) polarization free energy of solvation -32.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds