Wall clock time and date at job start Tue Mar 31 2020 03:35:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.50706 * 109.52134 * 2 1 4 4 O 1.21277 * 119.99617 * 240.64961 * 3 2 1 5 5 N 1.34777 * 120.00239 * 60.65108 * 3 2 1 6 6 C 1.47074 * 120.88116 * 174.65340 * 5 3 2 7 7 C 1.53242 * 108.52228 * 231.20424 * 6 5 3 8 8 N 1.46900 * 109.34017 * 306.17322 * 7 6 5 9 9 C 1.46899 * 111.00010 * 187.25466 * 8 7 6 10 10 C 1.50700 * 109.47345 * 170.00101 * 9 8 7 11 11 H 1.07997 * 119.99859 * 359.97438 * 10 9 8 12 12 C 1.37874 * 119.99965 * 179.97438 * 10 9 8 13 13 N 1.31512 * 120.00196 * 359.97438 * 12 10 9 14 14 Si 1.86795 * 119.99888 * 180.02562 * 12 10 9 15 15 H 1.48502 * 109.47552 * 59.99641 * 14 12 10 16 16 H 1.48499 * 109.47116 * 299.99819 * 14 12 10 17 17 H 1.48500 * 109.47213 * 180.02562 * 14 12 10 18 18 C 1.46894 * 111.26922 * 63.10260 * 8 7 6 19 19 C 1.47084 * 120.87951 * 354.67570 * 5 3 2 20 20 C 1.53179 * 109.52488 * 120.12122 * 2 1 3 21 21 C 1.53305 * 108.97101 * 176.89022 * 20 2 1 22 22 C 1.53095 * 109.19593 * 303.06112 * 21 20 2 23 23 O 1.42903 * 109.41241 * 57.60731 * 22 21 20 24 24 C 1.42907 * 114.09702 * 298.84057 * 23 22 21 25 25 H 1.09004 * 109.47092 * 69.75185 * 1 2 3 26 26 H 1.09002 * 109.47222 * 189.75149 * 1 2 3 27 27 H 1.09006 * 109.47456 * 309.75436 * 1 2 3 28 28 H 1.09003 * 109.62503 * 111.49471 * 6 5 3 29 29 H 1.08998 * 109.79246 * 351.01200 * 6 5 3 30 30 H 1.09005 * 109.49078 * 186.21412 * 7 6 5 31 31 H 1.08999 * 109.50949 * 66.14631 * 7 6 5 32 32 H 1.08998 * 109.47294 * 49.99817 * 9 8 7 33 33 H 1.09005 * 109.47018 * 290.00211 * 9 8 7 34 34 H 0.97004 * 120.00121 * 359.97438 * 13 12 10 35 35 H 1.09001 * 109.49401 * 56.85467 * 18 8 7 36 36 H 1.09001 * 109.49360 * 176.93594 * 18 8 7 37 37 H 1.08993 * 109.62811 * 248.50808 * 19 5 3 38 38 H 1.08999 * 109.62665 * 9.08823 * 19 5 3 39 39 H 1.09004 * 109.54673 * 296.82424 * 20 2 1 40 40 H 1.09009 * 109.53971 * 57.08273 * 20 2 1 41 41 H 1.09001 * 109.51004 * 183.14520 * 21 20 2 42 42 H 1.09004 * 109.55549 * 63.00272 * 21 20 2 43 43 H 1.08995 * 109.47850 * 297.62586 * 22 21 20 44 44 H 1.09001 * 109.49094 * 177.59770 * 22 21 20 45 45 H 1.09000 * 109.48021 * 301.17518 * 24 23 22 46 46 H 1.08998 * 109.48912 * 181.15304 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0335 1.4204 0.0000 4 8 2.7213 1.8199 -0.9155 5 7 1.7195 2.2468 1.0174 6 6 2.2943 3.5982 1.0971 7 6 2.8961 3.7897 2.4933 8 7 1.8776 3.4870 3.5077 9 6 2.3595 3.8228 4.8542 10 6 1.2174 3.7338 5.8333 11 1 0.2320 3.4560 5.4896 12 6 1.4306 4.0071 7.1678 13 7 2.6307 4.3449 7.5863 14 14 0.0150 3.8960 8.3815 15 1 -0.5306 2.5149 8.3808 16 1 -1.0521 4.8500 7.9860 17 1 0.5022 4.2356 9.7426 18 6 1.4543 2.0823 3.4352 19 6 0.7934 1.8208 2.0776 20 6 2.0419 -0.7245 1.2488 21 6 3.5728 -0.7854 1.1971 22 6 4.0056 -1.4793 -0.0971 23 8 3.4695 -0.7723 -1.2173 24 6 2.0416 -0.7242 -1.2479 25 1 -0.3633 0.3557 -0.9642 26 1 -0.3634 -1.0128 0.1741 27 1 -0.3634 0.6572 0.7901 28 1 1.5122 4.3391 0.9306 29 1 3.0735 3.7129 0.3436 30 1 3.2281 4.8216 2.6078 31 1 3.7454 3.1182 2.6189 32 1 2.7601 4.8365 4.8544 33 1 3.1428 3.1226 5.1449 34 1 3.3660 4.4014 6.9562 35 1 2.3235 1.4342 3.5474 36 1 0.7407 1.8757 4.2329 37 1 -0.1329 2.3907 2.0054 38 1 0.5811 0.7568 1.9726 39 1 1.7269 -0.1818 2.1401 40 1 1.6376 -1.7365 1.2746 41 1 3.9439 -1.3482 2.0537 42 1 3.9793 0.2257 1.2217 43 1 3.6337 -2.5039 -0.1021 44 1 5.0938 -1.4873 -0.1592 45 1 1.6440 -1.7389 -1.2680 46 1 1.7148 -0.1881 -2.1389 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602204565.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:35:43 Heat of formation + Delta-G solvation = -85.143903 kcal Electronic energy + Delta-G solvation = -26136.779273 eV Core-core repulsion = 22639.882328 eV Total energy + Delta-G solvation = -3496.896945 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.24188 -39.90529 -38.71585 -36.57455 -35.63780 -34.34830 -33.15540 -32.15915 -29.81809 -27.96992 -27.16888 -26.26188 -24.74521 -24.68762 -23.54545 -22.73095 -21.37330 -19.81676 -18.91397 -17.70243 -17.57926 -17.14680 -16.73462 -16.36851 -16.32711 -16.07078 -15.77004 -15.55753 -15.46033 -15.06984 -14.98857 -14.57177 -14.01693 -13.81640 -13.68592 -13.40154 -13.29743 -13.15434 -13.07841 -12.90454 -12.71482 -12.49673 -12.41405 -12.19034 -12.12493 -11.95818 -11.87089 -11.63321 -11.24295 -10.83747 -10.70493 -10.57404 -10.31832 -9.80314 -9.19950 -8.67771 -6.39328 1.56419 1.59160 1.64726 1.83556 1.89791 2.57526 2.95720 3.03975 3.16825 3.29081 3.54934 3.70537 3.77947 3.88404 3.91759 3.94760 4.09033 4.13108 4.20343 4.29254 4.36367 4.41847 4.51006 4.60326 4.61862 4.65239 4.67913 4.72068 4.75336 4.80190 4.81957 4.85248 4.92762 4.98568 5.00561 5.11812 5.17076 5.26323 5.38910 5.71798 5.92314 6.28219 6.29892 6.34206 6.42213 6.57427 7.13131 7.42234 8.70962 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.023997 B = 0.003982 C = 0.003899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.512572 B = 7030.242577 C = 7180.041710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.111 4.111 3 C 0.524 3.476 4 O -0.572 6.572 5 N -0.611 5.611 6 C 0.127 3.873 7 C 0.045 3.955 8 N -0.532 5.532 9 C 0.195 3.805 10 C -0.595 4.595 11 H 0.063 0.937 12 C -0.037 4.037 13 N -0.940 5.940 14 Si 1.122 2.878 15 H -0.263 1.263 16 H -0.270 1.270 17 H -0.289 1.289 18 C 0.051 3.949 19 C 0.102 3.898 20 C -0.123 4.123 21 C -0.158 4.158 22 C 0.057 3.943 23 O -0.398 6.398 24 C 0.086 3.914 25 H 0.067 0.933 26 H 0.102 0.898 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.084 0.916 30 H 0.078 0.922 31 H 0.012 0.988 32 H -0.003 1.003 33 H -0.047 1.047 34 H 0.251 0.749 35 H 0.015 0.985 36 H 0.087 0.913 37 H 0.084 0.916 38 H 0.137 0.863 39 H 0.080 0.920 40 H 0.113 0.887 41 H 0.091 0.909 42 H 0.029 0.971 43 H 0.079 0.921 44 H 0.090 0.910 45 H 0.091 0.909 46 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.823 -14.508 -14.864 21.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.115 4.115 3 C 0.313 3.687 4 O -0.451 6.451 5 N -0.344 5.344 6 C 0.004 3.996 7 C -0.084 4.084 8 N -0.256 5.256 9 C 0.068 3.932 10 C -0.633 4.633 11 H 0.081 0.919 12 C -0.234 4.234 13 N -0.577 5.577 14 Si 0.942 3.058 15 H -0.188 1.188 16 H -0.195 1.195 17 H -0.214 1.214 18 C -0.078 4.078 19 C -0.020 4.020 20 C -0.160 4.160 21 C -0.196 4.196 22 C -0.019 4.019 23 O -0.316 6.316 24 C 0.009 3.991 25 H 0.086 0.914 26 H 0.121 0.879 27 H 0.097 0.903 28 H 0.098 0.902 29 H 0.102 0.898 30 H 0.097 0.903 31 H 0.031 0.969 32 H 0.016 0.984 33 H -0.029 1.029 34 H 0.061 0.939 35 H 0.034 0.966 36 H 0.105 0.895 37 H 0.103 0.897 38 H 0.154 0.846 39 H 0.098 0.902 40 H 0.131 0.869 41 H 0.109 0.891 42 H 0.048 0.952 43 H 0.097 0.903 44 H 0.109 0.891 45 H 0.109 0.891 46 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -6.139 -13.735 -14.026 20.569 hybrid contribution 1.897 0.064 -0.928 2.113 sum -4.242 -13.671 -14.953 20.700 Atomic orbital electron populations 1.22232 0.89586 1.05592 1.03989 1.21573 0.99541 0.90780 0.99594 1.21010 0.79060 0.87967 0.80613 1.90666 1.40172 1.77597 1.36653 1.48220 1.46421 1.14756 1.24969 1.21517 0.98806 0.84007 0.95241 1.22429 0.92734 1.00736 0.92530 1.61935 1.38183 1.21208 1.04310 1.19536 0.94358 0.92923 0.86356 1.22240 0.96553 1.50268 0.94262 0.91862 1.27438 1.02920 0.92724 1.00327 1.70937 1.01537 1.46938 1.38323 0.82878 0.71628 0.78096 0.73171 1.18823 1.19506 1.21437 1.22417 0.99164 0.87862 0.98372 1.22647 0.92129 1.03161 0.84070 1.22101 0.95152 1.02736 0.95998 1.22212 0.96996 1.00484 0.99935 1.22709 0.99369 0.95248 0.84615 1.88018 1.21108 1.76831 1.45664 1.22535 0.80699 1.00069 0.95829 0.91440 0.87930 0.90276 0.90225 0.89812 0.90319 0.96948 0.98448 1.02904 0.93942 0.96634 0.89473 0.89739 0.84609 0.90183 0.86911 0.89083 0.95220 0.90278 0.89141 0.89137 0.89548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.15 8.10 71.98 0.58 -1.56 16 2 C -0.11 -2.24 0.50 -52.84 -0.03 -2.26 16 3 C 0.52 15.40 5.26 87.66 0.46 15.86 16 4 O -0.57 -21.35 14.86 12.69 0.19 -21.17 16 5 N -0.61 -17.94 3.00 -817.94 -2.46 -20.39 16 6 C 0.13 4.10 6.57 86.35 0.57 4.66 16 7 C 0.04 1.67 5.62 86.38 0.49 2.15 16 8 N -0.53 -22.30 4.62 -899.81 -4.16 -26.46 16 9 C 0.19 10.13 4.04 85.56 0.35 10.48 16 10 C -0.60 -32.59 8.41 25.60 0.22 -32.37 16 11 H 0.06 3.34 7.13 -2.91 -0.02 3.32 16 12 C -0.04 -2.07 5.46 84.65 0.46 -1.61 16 13 N -0.94 -57.42 13.65 21.45 0.29 -57.12 16 14 Si 1.12 48.30 29.90 68.60 2.05 50.35 16 15 H -0.26 -10.24 7.11 99.48 0.71 -9.54 16 16 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 17 H -0.29 -12.65 7.11 99.48 0.71 -11.94 16 18 C 0.05 1.78 5.20 86.39 0.45 2.23 16 19 C 0.10 2.64 4.12 86.35 0.36 3.00 16 20 C -0.12 -2.20 4.48 30.76 0.14 -2.06 16 21 C -0.16 -3.43 5.87 30.73 0.18 -3.25 16 22 C 0.06 1.14 6.84 72.01 0.49 1.63 16 23 O -0.40 -10.45 9.84 -133.27 -1.31 -11.76 16 24 C 0.09 1.73 5.06 72.01 0.36 2.09 16 25 H 0.07 0.93 8.12 -2.38 -0.02 0.91 16 26 H 0.10 0.80 8.12 -2.39 -0.02 0.78 16 27 H 0.08 1.13 4.60 -2.38 -0.01 1.12 16 28 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 29 H 0.08 2.77 7.11 -2.39 -0.02 2.75 16 30 H 0.08 2.89 7.99 -2.38 -0.02 2.87 16 31 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 32 H 0.00 -0.14 7.84 -2.39 -0.02 -0.16 16 33 H -0.05 -2.63 7.99 -2.38 -0.02 -2.65 16 34 H 0.25 15.70 7.22 -92.71 -0.67 15.03 16 35 H 0.02 0.57 7.76 -2.39 -0.02 0.55 16 36 H 0.09 3.26 6.67 -2.39 -0.02 3.24 16 37 H 0.08 2.11 8.10 -2.39 -0.02 2.09 16 38 H 0.14 2.64 2.75 -2.39 -0.01 2.64 16 39 H 0.08 1.58 4.35 -2.38 -0.01 1.57 16 40 H 0.11 1.27 8.14 -2.38 -0.02 1.25 16 41 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 42 H 0.03 0.87 7.40 -2.38 -0.02 0.85 16 43 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 44 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 45 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 46 H 0.09 1.90 8.03 -2.39 -0.02 1.88 16 Total: -1.00 -73.36 340.90 0.74 -72.61 By element: Atomic # 1 Polarization: 13.88 SS G_CDS: 1.06 Total: 14.94 kcal Atomic # 6 Polarization: -6.09 SS G_CDS: 5.07 Total: -1.01 kcal Atomic # 7 Polarization: -97.65 SS G_CDS: -6.32 Total: -103.97 kcal Atomic # 8 Polarization: -31.80 SS G_CDS: -1.12 Total: -32.92 kcal Atomic # 14 Polarization: 48.30 SS G_CDS: 2.05 Total: 50.35 kcal Total: -73.36 0.74 -72.61 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602204565.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.529 kcal (2) G-P(sol) polarization free energy of solvation -73.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds