Wall clock time and date at job start Tue Mar 31 2020 03:24:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99824 * 2 1 4 4 H 1.48498 * 109.47142 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46993 * 299.99961 * 3 2 1 6 6 H 1.48504 * 109.47150 * 59.99826 * 3 2 1 7 7 C 1.37879 * 120.00199 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99507 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99858 * 359.97438 * 7 2 1 10 10 N 1.46900 * 109.46830 * 179.97438 * 9 7 2 11 11 C 1.46900 * 111.00033 * 170.00163 * 10 9 7 12 12 C 1.53234 * 109.34355 * 187.25446 * 11 10 9 13 13 N 1.47086 * 108.52178 * 306.17321 * 12 11 10 14 14 C 1.34777 * 120.87790 * 231.18496 * 13 12 11 15 15 O 1.21279 * 120.00432 * 355.22170 * 14 13 12 16 16 C 1.50703 * 119.99548 * 175.22179 * 14 13 12 17 17 C 1.52999 * 109.46976 * 275.21784 * 16 14 13 18 18 C 1.52998 * 109.47131 * 180.02562 * 17 16 14 19 19 C 1.52997 * 109.47304 * 59.99933 * 18 17 16 20 20 O 1.42906 * 109.46634 * 60.00123 * 19 18 17 21 21 C 1.53002 * 109.47094 * 300.00484 * 19 18 17 22 22 C 1.52994 * 109.46934 * 155.22344 * 16 14 13 23 23 C 1.47081 * 118.23717 * 51.45600 * 13 12 11 24 24 C 1.46902 * 111.00108 * 294.30470 * 10 9 7 25 25 H 0.97000 * 120.00617 * 0.02562 * 1 2 3 26 26 H 1.09006 * 109.47011 * 60.00418 * 9 7 2 27 27 H 1.08990 * 109.47486 * 300.00274 * 9 7 2 28 28 H 1.09004 * 109.49381 * 67.29365 * 11 10 9 29 29 H 1.09000 * 109.49188 * 307.21885 * 11 10 9 30 30 H 1.08996 * 109.63080 * 186.45903 * 12 11 10 31 31 H 1.09001 * 109.62893 * 65.87939 * 12 11 10 32 32 H 1.08994 * 109.47337 * 35.22146 * 16 14 13 33 33 H 1.08994 * 109.47383 * 300.00334 * 17 16 14 34 34 H 1.09007 * 109.46934 * 60.00674 * 17 16 14 35 35 H 1.09006 * 109.47043 * 299.99908 * 18 17 16 36 36 H 1.09002 * 109.47404 * 180.02562 * 18 17 16 37 37 H 1.08995 * 109.47506 * 179.97438 * 19 18 17 38 38 H 0.96697 * 113.99948 * 60.00611 * 20 19 18 39 39 H 1.09001 * 109.46794 * 299.99240 * 21 19 18 40 40 H 1.09006 * 109.46836 * 179.97438 * 21 19 18 41 41 H 1.09002 * 109.46936 * 299.99926 * 22 16 14 42 42 H 1.08999 * 109.47681 * 59.99971 * 22 16 14 43 43 H 1.09001 * 109.62949 * 68.24948 * 23 13 12 44 44 H 1.08999 * 109.62938 * 188.83353 * 23 13 12 45 45 H 1.08994 * 109.48909 * 292.70432 * 24 10 9 46 46 H 1.08996 * 109.49366 * 52.76368 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 7 2.2058 -3.6157 -0.0018 11 6 1.5216 -4.8936 0.2363 12 6 2.5642 -6.0033 0.4078 13 7 3.4613 -5.9858 -0.7577 14 6 3.7111 -7.1116 -1.4553 15 8 3.2639 -8.1727 -1.0746 16 6 4.5462 -7.0519 -2.7083 17 6 3.6566 -6.6820 -3.8969 18 6 4.5043 -6.6220 -5.1692 19 6 5.1470 -7.9878 -5.4187 20 8 4.1246 -8.9741 -5.5737 21 6 6.0366 -8.3576 -4.2301 22 6 5.1893 -8.4174 -2.9582 23 6 4.0832 -4.7083 -1.1380 24 6 2.9760 -3.6484 -1.2523 25 1 -0.4851 0.8400 -0.0004 26 1 0.6241 -2.5567 -0.8904 27 1 0.6248 -2.5571 0.8896 28 1 0.8793 -5.1261 -0.6132 29 1 0.9170 -4.8196 1.1402 30 1 2.0638 -6.9696 0.4702 31 1 3.1406 -5.8270 1.3161 32 1 5.3258 -6.2994 -2.5899 33 1 2.8771 -7.4345 -4.0153 34 1 3.1985 -5.7090 -3.7189 35 1 5.2841 -5.8695 -5.0510 36 1 3.8706 -6.3580 -6.0159 37 1 5.7506 -7.9451 -6.3253 38 1 3.5219 -8.8035 -6.3104 39 1 6.8164 -7.6053 -4.1120 40 1 6.4941 -9.3309 -4.4078 41 1 5.8230 -8.6810 -2.1114 42 1 4.4098 -9.1700 -3.0766 43 1 4.8026 -4.4099 -0.3755 44 1 4.5873 -4.8180 -2.0982 45 1 2.3135 -3.8983 -2.0809 46 1 3.4259 -2.6713 -1.4280 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602205424.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:24:02 Heat of formation + Delta-G solvation = -116.663824 kcal Electronic energy + Delta-G solvation = -25176.270837 eV Core-core repulsion = 21678.007085 eV Total energy + Delta-G solvation = -3498.263752 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.62809 -39.76961 -38.79228 -36.03768 -35.88124 -34.39148 -32.42354 -31.73254 -30.94231 -29.87705 -27.31646 -24.99733 -24.47099 -23.67777 -23.44583 -21.92191 -20.80110 -19.67982 -18.49243 -18.39980 -17.57482 -17.26320 -16.67725 -16.46109 -16.29867 -16.01999 -15.62789 -15.41844 -15.29612 -14.93848 -14.49401 -14.25893 -14.04498 -13.98097 -13.57446 -13.19362 -13.09090 -13.04539 -13.02880 -12.73745 -12.61580 -12.41981 -12.36330 -12.22825 -12.10128 -11.93735 -11.79991 -11.45169 -11.27078 -11.14567 -10.76817 -10.62298 -10.47339 -9.77443 -9.06995 -8.19852 -6.30358 1.43699 1.45148 1.55714 1.58119 1.95671 2.41706 3.12703 3.21466 3.35495 3.52774 3.75827 3.77987 3.93355 4.00971 4.11314 4.17453 4.22409 4.23692 4.26610 4.41283 4.42365 4.45766 4.58223 4.58845 4.71053 4.78731 4.82275 4.93033 4.94346 4.99251 5.07920 5.09884 5.18807 5.20133 5.24686 5.25192 5.31637 5.43387 5.52868 5.64596 6.02168 6.22931 6.43063 6.54921 6.85980 6.98131 7.12032 7.39948 8.91807 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.021763 B = 0.003511 C = 0.003239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.252581 B = 7971.914088 C = 8642.984548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C 0.000 4.000 3 Si 0.971 3.029 4 H -0.257 1.257 5 H -0.280 1.280 6 H -0.283 1.283 7 C -0.519 4.519 8 H 0.071 0.929 9 C 0.208 3.792 10 N -0.538 5.538 11 C 0.045 3.955 12 C 0.126 3.874 13 N -0.611 5.611 14 C 0.514 3.486 15 O -0.587 6.587 16 C -0.098 4.098 17 C -0.101 4.101 18 C -0.143 4.143 19 C 0.101 3.899 20 O -0.586 6.586 21 C -0.110 4.110 22 C -0.093 4.093 23 C 0.118 3.882 24 C 0.051 3.949 25 H 0.264 0.736 26 H -0.041 1.041 27 H 0.003 0.997 28 H 0.013 0.987 29 H 0.080 0.920 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.118 0.882 33 H 0.050 0.950 34 H 0.062 0.938 35 H 0.094 0.906 36 H 0.080 0.920 37 H 0.077 0.923 38 H 0.388 0.612 39 H 0.101 0.899 40 H 0.071 0.929 41 H 0.059 0.941 42 H 0.049 0.951 43 H 0.086 0.914 44 H 0.119 0.881 45 H 0.016 0.984 46 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.924 -12.806 -11.634 22.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.198 4.198 3 Si 0.796 3.204 4 H -0.180 1.180 5 H -0.206 1.206 6 H -0.209 1.209 7 C -0.557 4.557 8 H 0.089 0.911 9 C 0.082 3.918 10 N -0.263 5.263 11 C -0.084 4.084 12 C 0.003 3.997 13 N -0.344 5.344 14 C 0.304 3.696 15 O -0.468 6.468 16 C -0.119 4.119 17 C -0.139 4.139 18 C -0.181 4.181 19 C 0.042 3.958 20 O -0.394 6.394 21 C -0.148 4.148 22 C -0.131 4.131 23 C -0.004 4.004 24 C -0.078 4.078 25 H 0.072 0.928 26 H -0.023 1.023 27 H 0.021 0.979 28 H 0.031 0.969 29 H 0.098 0.902 30 H 0.102 0.898 31 H 0.099 0.901 32 H 0.136 0.864 33 H 0.069 0.931 34 H 0.080 0.920 35 H 0.113 0.887 36 H 0.099 0.901 37 H 0.095 0.905 38 H 0.237 0.763 39 H 0.119 0.881 40 H 0.089 0.911 41 H 0.077 0.923 42 H 0.068 0.932 43 H 0.104 0.896 44 H 0.137 0.863 45 H 0.034 0.966 46 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 14.177 -13.431 -10.527 22.185 hybrid contribution -1.560 1.069 -0.668 2.006 sum 12.617 -12.361 -11.196 20.912 Atomic orbital electron populations 1.70105 1.07948 1.27857 1.51892 1.25950 0.95671 1.03363 0.94796 0.85302 0.79260 0.78391 0.77468 1.18041 1.20599 1.20897 1.21481 0.93875 0.90549 1.49838 0.91058 1.19384 0.90104 0.88994 0.93350 1.62008 1.27012 1.02365 1.34920 1.22407 0.95529 0.90155 1.00301 1.21575 0.91474 0.98028 0.88666 1.48367 1.46630 1.09378 1.29992 1.21350 0.80516 0.82451 0.85282 1.90635 1.54632 1.30499 1.71003 1.21407 0.98187 1.01098 0.91203 1.21336 0.97812 1.00985 0.93760 1.22240 1.00463 0.98546 0.96827 1.21926 0.88790 0.86865 0.98196 1.86532 1.45574 1.50581 1.56748 1.21612 0.97307 1.03328 0.92506 1.21202 0.98946 0.94768 0.98179 1.22188 0.94658 0.80646 1.02944 1.22462 0.95555 1.00116 0.89695 0.92766 1.02314 0.97907 0.96856 0.90207 0.89775 0.90092 0.86402 0.93106 0.91963 0.88714 0.90129 0.90502 0.76265 0.88092 0.91054 0.92272 0.93241 0.89552 0.86347 0.96577 0.89328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.57 13.29 21.45 0.28 -55.28 16 2 C 0.00 0.00 5.46 84.66 0.46 0.46 16 3 Si 0.97 42.55 29.54 68.60 2.03 44.57 16 4 H -0.26 -10.54 7.11 99.48 0.71 -9.83 16 5 H -0.28 -11.99 7.11 99.48 0.71 -11.29 16 6 H -0.28 -12.30 7.11 99.48 0.71 -11.60 16 7 C -0.52 -28.11 8.41 25.60 0.22 -27.90 16 8 H 0.07 3.69 7.13 -2.91 -0.02 3.67 16 9 C 0.21 10.84 4.72 85.56 0.40 11.24 16 10 N -0.54 -22.36 4.62 -898.88 -4.15 -26.51 16 11 C 0.05 1.67 5.62 86.38 0.49 2.15 16 12 C 0.13 3.98 6.58 86.35 0.57 4.55 16 13 N -0.61 -17.90 3.00 -817.03 -2.45 -20.35 16 14 C 0.51 15.26 6.81 87.66 0.60 15.85 16 15 O -0.59 -22.01 15.57 -3.02 -0.05 -22.06 16 16 C -0.10 -2.07 1.70 -11.54 -0.02 -2.09 16 17 C -0.10 -2.00 4.92 30.59 0.15 -1.84 16 18 C -0.14 -1.81 5.64 30.59 0.17 -1.63 16 19 C 0.10 1.32 3.77 30.59 0.12 1.44 16 20 O -0.59 -10.17 11.97 -148.98 -1.78 -11.95 16 21 C -0.11 -1.58 5.66 30.58 0.17 -1.41 16 22 C -0.09 -1.97 4.58 30.58 0.14 -1.83 16 23 C 0.12 3.01 6.45 86.51 0.56 3.57 16 24 C 0.05 1.76 5.47 86.54 0.47 2.23 16 25 H 0.26 14.68 8.31 -92.71 -0.77 13.91 16 26 H -0.04 -2.34 8.12 -2.38 -0.02 -2.36 16 27 H 0.00 0.16 7.97 -2.39 -0.02 0.14 16 28 H 0.01 0.52 8.14 -2.38 -0.02 0.50 16 29 H 0.08 2.91 7.99 -2.39 -0.02 2.89 16 30 H 0.08 2.73 7.09 -2.39 -0.02 2.71 16 31 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 32 H 0.12 1.83 6.33 -2.39 -0.02 1.82 16 33 H 0.05 1.25 7.68 -2.39 -0.02 1.23 16 34 H 0.06 1.31 7.90 -2.38 -0.02 1.29 16 35 H 0.09 0.88 8.14 -2.38 -0.02 0.86 16 36 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 37 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 38 H 0.39 3.82 9.08 -74.06 -0.67 3.15 16 39 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 40 H 0.07 1.04 8.14 -2.38 -0.02 1.02 16 41 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 42 H 0.05 1.39 7.41 -2.39 -0.02 1.37 16 43 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 44 H 0.12 2.17 5.25 -2.39 -0.01 2.16 16 45 H 0.02 0.58 8.14 -2.39 -0.02 0.57 16 46 H 0.09 3.23 6.67 -2.39 -0.02 3.22 16 Total: -1.00 -71.81 353.46 -1.34 -73.15 By element: Atomic # 1 Polarization: 13.34 SS G_CDS: 0.29 Total: 13.63 kcal Atomic # 6 Polarization: 0.31 SS G_CDS: 4.50 Total: 4.80 kcal Atomic # 7 Polarization: -95.82 SS G_CDS: -6.32 Total: -102.14 kcal Atomic # 8 Polarization: -32.18 SS G_CDS: -1.83 Total: -34.01 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 2.03 Total: 44.57 kcal Total: -71.81 -1.34 -73.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602205424.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.515 kcal (2) G-P(sol) polarization free energy of solvation -71.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds