Wall clock time and date at job start Tue Mar 31 2020 03:24:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 120.00083 * 2 1 4 4 H 1.48499 * 109.47375 * 269.99938 * 3 2 1 5 5 H 1.48498 * 109.47189 * 30.00464 * 3 2 1 6 6 H 1.48501 * 109.46732 * 150.00080 * 3 2 1 7 7 C 1.37876 * 119.99576 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99821 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00253 * 359.97438 * 7 2 1 10 10 N 1.46897 * 109.47099 * 175.35683 * 9 7 2 11 11 C 1.46899 * 110.99830 * 295.69660 * 10 9 7 12 12 C 1.53242 * 109.33903 * 187.25563 * 11 10 9 13 13 N 1.47085 * 108.52143 * 306.17461 * 12 11 10 14 14 C 1.34782 * 120.87761 * 231.19027 * 13 12 11 15 15 O 1.21274 * 120.00358 * 355.66958 * 14 13 12 16 16 C 1.50702 * 119.99351 * 175.95079 * 14 13 12 17 17 O 1.42896 * 109.47445 * 56.36293 * 16 14 13 18 18 C 1.52998 * 109.47341 * 296.35613 * 16 14 13 19 19 C 1.52999 * 109.47325 * 180.02562 * 18 16 14 20 20 C 1.53000 * 109.47115 * 60.00163 * 19 18 16 21 21 C 1.52997 * 109.47262 * 300.00067 * 20 19 18 22 22 C 1.52999 * 109.47110 * 59.99929 * 21 20 19 23 23 C 1.47073 * 118.23824 * 51.45472 * 13 12 11 24 24 C 1.46899 * 111.00075 * 60.00019 * 10 9 7 25 25 H 0.97000 * 119.99515 * 359.97438 * 1 2 3 26 26 H 1.09006 * 109.46792 * 55.35854 * 9 7 2 27 27 H 1.08995 * 109.47236 * 295.36046 * 9 7 2 28 28 H 1.08999 * 109.49347 * 67.29779 * 11 10 9 29 29 H 1.08994 * 109.49988 * 307.21201 * 11 10 9 30 30 H 1.09000 * 109.63310 * 186.46686 * 12 11 10 31 31 H 1.08998 * 109.78892 * 65.97594 * 12 11 10 32 32 H 0.96701 * 113.99613 * 311.75055 * 17 16 14 33 33 H 1.08997 * 109.47096 * 300.01031 * 18 16 14 34 34 H 1.09004 * 109.46751 * 60.00640 * 18 16 14 35 35 H 1.09001 * 109.47103 * 300.00046 * 19 18 16 36 36 H 1.09006 * 109.47092 * 180.02562 * 19 18 16 37 37 H 1.09003 * 109.46964 * 180.02562 * 20 19 18 38 38 H 1.09008 * 109.46923 * 60.00238 * 20 19 18 39 39 H 1.08995 * 109.47273 * 300.00280 * 21 20 19 40 40 H 1.08995 * 109.47341 * 179.97438 * 21 20 19 41 41 H 1.08998 * 109.47606 * 180.02562 * 22 21 20 42 42 H 1.08997 * 109.47500 * 59.99999 * 22 21 20 43 43 H 1.08996 * 109.63050 * 68.25361 * 23 13 12 44 44 H 1.09002 * 109.63035 * 188.83749 * 23 13 12 45 45 H 1.08994 * 109.49001 * 292.70416 * 24 10 9 46 46 H 1.08995 * 109.49130 * 52.76182 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4400 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 7 2.2014 -3.6135 -0.1133 11 6 2.9064 -3.5757 -1.4015 12 6 3.7494 -4.8460 -1.5561 13 7 4.6172 -4.9774 -0.3758 14 6 5.9436 -5.1751 -0.5109 15 8 6.4250 -5.3253 -1.6138 16 6 6.8274 -5.2157 0.7090 17 8 6.3542 -6.2217 1.6068 18 6 6.7969 -3.8544 1.4066 19 6 7.6946 -3.8954 2.6448 20 6 9.1292 -4.2208 2.2240 21 6 9.1598 -5.5821 1.5265 22 6 8.2620 -5.5411 0.2883 23 6 3.9983 -4.8933 0.9557 24 6 3.1464 -3.6152 1.0115 25 1 -0.4849 0.8401 0.0004 26 1 0.5630 -2.5215 -0.8458 27 1 0.6884 -2.5940 0.9282 28 1 3.5565 -2.7015 -1.4349 29 1 2.1800 -3.5205 -2.2122 30 1 4.3622 -4.7719 -2.4545 31 1 3.0964 -5.7157 -1.6290 32 1 5.4026 -6.1832 1.7743 33 1 7.1578 -3.0870 0.7217 34 1 5.7747 -3.6224 1.7060 35 1 7.3340 -4.6628 3.3298 36 1 7.6725 -2.9256 3.1420 37 1 9.7687 -4.2505 3.1062 38 1 9.4898 -3.4533 1.5390 39 1 8.7992 -6.3495 2.2113 40 1 10.1817 -5.8137 1.2263 41 1 8.2834 -6.5110 -0.2085 42 1 8.6226 -4.7737 -0.3967 43 1 3.3663 -5.7657 1.1216 44 1 4.7755 -4.8503 1.7188 45 1 3.7931 -2.7404 0.9444 46 1 2.5939 -3.5881 1.9506 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602207163.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:24:04 Heat of formation + Delta-G solvation = -97.875546 kcal Electronic energy + Delta-G solvation = -26035.068240 eV Core-core repulsion = 22537.619209 eV Total energy + Delta-G solvation = -3497.449031 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.20732 -39.65100 -38.78235 -36.67054 -35.79857 -34.30632 -32.45386 -31.64464 -31.06623 -29.86259 -27.32772 -25.11543 -24.74173 -23.72062 -23.54911 -21.95372 -20.86298 -20.55583 -18.72750 -18.17651 -17.73859 -17.23969 -16.76583 -16.46552 -16.10825 -15.95096 -15.56763 -15.41434 -15.22558 -15.14504 -14.61907 -14.30040 -13.98443 -13.68852 -13.60596 -13.32848 -13.26495 -13.13364 -12.96570 -12.92973 -12.60135 -12.56594 -12.31697 -12.21434 -11.98663 -11.92669 -11.83486 -11.65851 -11.59987 -11.40679 -10.85357 -10.63218 -10.46643 -9.87167 -9.08806 -8.18905 -6.37645 1.31765 1.33512 1.35608 1.44274 1.78931 2.34086 3.03793 3.07531 3.16159 3.27022 3.56339 3.67422 3.82035 3.99403 4.10037 4.15471 4.20523 4.23629 4.29556 4.39406 4.45719 4.51555 4.53208 4.61155 4.68519 4.82393 4.83719 4.96268 5.00241 5.05995 5.12766 5.18104 5.21213 5.23364 5.30861 5.31194 5.31793 5.37690 5.56054 5.71441 5.96051 6.12192 6.27647 6.41785 6.43269 6.82171 6.90446 7.34144 8.83664 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.018147 B = 0.004621 C = 0.004113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1542.543628 B = 6058.455988 C = 6805.995445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.017 3.983 3 Si 0.950 3.050 4 H -0.279 1.279 5 H -0.279 1.279 6 H -0.268 1.268 7 C -0.556 4.556 8 H 0.052 0.948 9 C 0.200 3.800 10 N -0.533 5.533 11 C 0.057 3.943 12 C 0.123 3.877 13 N -0.604 5.604 14 C 0.485 3.515 15 O -0.572 6.572 16 C 0.137 3.863 17 O -0.547 6.547 18 C -0.152 4.152 19 C -0.109 4.109 20 C -0.121 4.121 21 C -0.109 4.109 22 C -0.092 4.092 23 C 0.092 3.908 24 C 0.049 3.951 25 H 0.265 0.735 26 H 0.008 0.992 27 H 0.014 0.986 28 H 0.015 0.985 29 H 0.074 0.926 30 H 0.082 0.918 31 H 0.088 0.912 32 H 0.386 0.614 33 H 0.063 0.937 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.073 0.927 37 H 0.080 0.920 38 H 0.058 0.942 39 H 0.071 0.929 40 H 0.076 0.924 41 H 0.062 0.938 42 H 0.071 0.929 43 H 0.105 0.895 44 H 0.118 0.882 45 H 0.024 0.976 46 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.782 -10.890 6.311 19.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.183 4.183 3 Si 0.776 3.224 4 H -0.204 1.204 5 H -0.205 1.205 6 H -0.193 1.193 7 C -0.595 4.595 8 H 0.071 0.929 9 C 0.074 3.926 10 N -0.257 5.257 11 C -0.073 4.073 12 C 0.001 3.999 13 N -0.337 5.337 14 C 0.273 3.727 15 O -0.452 6.452 16 C 0.093 3.907 17 O -0.359 6.359 18 C -0.189 4.189 19 C -0.146 4.146 20 C -0.158 4.158 21 C -0.146 4.146 22 C -0.129 4.129 23 C -0.029 4.029 24 C -0.080 4.080 25 H 0.074 0.926 26 H 0.027 0.973 27 H 0.032 0.968 28 H 0.034 0.966 29 H 0.093 0.907 30 H 0.100 0.900 31 H 0.106 0.894 32 H 0.241 0.759 33 H 0.082 0.918 34 H 0.098 0.902 35 H 0.097 0.903 36 H 0.092 0.908 37 H 0.099 0.901 38 H 0.077 0.923 39 H 0.090 0.910 40 H 0.094 0.906 41 H 0.081 0.919 42 H 0.090 0.910 43 H 0.123 0.877 44 H 0.135 0.865 45 H 0.042 0.958 46 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 15.203 -11.470 5.764 19.898 hybrid contribution -0.470 2.277 -0.570 2.393 sum 14.734 -9.194 5.195 18.127 Atomic orbital electron populations 1.70041 1.07389 1.27861 1.50902 1.25711 0.95509 1.02495 0.94565 0.85681 0.78831 0.79734 0.78202 1.20444 1.20479 1.19302 1.21935 0.93132 0.93039 1.51398 0.92950 1.19442 0.91016 0.86269 0.95906 1.62416 1.16983 1.44614 1.01687 1.22185 0.96253 0.95575 0.93240 1.21704 0.92055 0.97936 0.88254 1.48356 1.06636 1.70084 1.08655 1.22070 0.82748 0.75613 0.92230 1.90643 1.74460 1.51045 1.29020 1.21322 0.94128 0.90061 0.85178 1.86633 1.30348 1.53935 1.65012 1.22420 1.02436 0.94869 0.99215 1.21434 0.94661 1.02654 0.95851 1.21586 0.96614 0.96787 1.00834 1.21454 0.99082 0.98262 0.95810 1.21359 0.90577 1.02295 0.98719 1.22662 0.97514 0.99533 0.83202 1.22379 0.94372 0.95724 0.95521 0.92563 0.97341 0.96828 0.96629 0.90715 0.89998 0.89420 0.75917 0.91796 0.90186 0.90323 0.90848 0.90109 0.92299 0.91016 0.90553 0.91934 0.91030 0.87684 0.86504 0.95755 0.89416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.12 13.29 21.45 0.28 -52.84 16 2 C 0.02 0.94 5.46 84.65 0.46 1.40 16 3 Si 0.95 42.86 29.54 68.60 2.03 44.89 16 4 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 5 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 6 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 7 C -0.56 -29.40 7.76 25.60 0.20 -29.20 16 8 H 0.05 2.76 5.88 -2.91 -0.02 2.75 16 9 C 0.20 9.86 5.11 85.56 0.44 10.30 16 10 N -0.53 -20.74 4.83 -898.89 -4.34 -25.08 16 11 C 0.06 2.12 5.24 86.38 0.45 2.57 16 12 C 0.12 3.81 6.58 86.35 0.57 4.38 16 13 N -0.60 -17.23 3.00 -817.04 -2.45 -19.69 16 14 C 0.49 14.66 6.73 87.66 0.59 15.25 16 15 O -0.57 -21.15 15.45 -3.01 -0.05 -21.20 16 16 C 0.14 3.26 0.66 -11.54 -0.01 3.25 16 17 O -0.55 -11.40 11.55 -148.98 -1.72 -13.12 16 18 C -0.15 -3.32 4.57 30.59 0.14 -3.18 16 19 C -0.11 -1.88 5.78 30.59 0.18 -1.70 16 20 C -0.12 -1.93 5.92 30.59 0.18 -1.75 16 21 C -0.11 -1.91 5.78 30.59 0.18 -1.73 16 22 C -0.09 -2.12 4.24 30.60 0.13 -1.99 16 23 C 0.09 2.17 4.33 86.51 0.37 2.54 16 24 C 0.05 1.60 4.99 86.54 0.43 2.03 16 25 H 0.27 14.46 8.31 -92.71 -0.77 13.69 16 26 H 0.01 0.46 8.08 -2.38 -0.02 0.44 16 27 H 0.01 0.71 8.14 -2.39 -0.02 0.69 16 28 H 0.02 0.66 7.07 -2.39 -0.02 0.64 16 29 H 0.07 2.82 8.06 -2.39 -0.02 2.80 16 30 H 0.08 2.65 7.09 -2.39 -0.02 2.64 16 31 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 32 H 0.39 6.34 5.19 -74.06 -0.38 5.95 16 33 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.08 1.77 4.91 -2.39 -0.01 1.76 16 35 H 0.08 1.28 7.68 -2.39 -0.02 1.26 16 36 H 0.07 1.18 8.14 -2.38 -0.02 1.16 16 37 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 38 H 0.06 0.97 8.14 -2.38 -0.02 0.95 16 39 H 0.07 1.29 7.68 -2.39 -0.02 1.27 16 40 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 41 H 0.06 1.58 8.13 -2.39 -0.02 1.56 16 42 H 0.07 1.77 8.06 -2.39 -0.02 1.75 16 43 H 0.11 2.06 8.14 -2.39 -0.02 2.04 16 44 H 0.12 2.15 2.97 -2.39 -0.01 2.15 16 45 H 0.02 0.91 6.39 -2.39 -0.02 0.89 16 46 H 0.09 2.75 8.11 -2.39 -0.02 2.73 16 Total: -1.00 -64.69 340.86 -1.34 -66.03 By element: Atomic # 1 Polarization: 18.26 SS G_CDS: 0.59 Total: 18.85 kcal Atomic # 6 Polarization: -2.15 SS G_CDS: 4.31 Total: 2.16 kcal Atomic # 7 Polarization: -91.10 SS G_CDS: -6.51 Total: -97.61 kcal Atomic # 8 Polarization: -32.56 SS G_CDS: -1.77 Total: -34.32 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.89 kcal Total: -64.69 -1.34 -66.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602207163.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.841 kcal (2) G-P(sol) polarization free energy of solvation -64.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds