Wall clock time and date at job start Tue Mar 31 2020 03:31:45
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31518 * 1
3 3 Si 1.86803 * 120.00092 * 2 1
4 4 H 1.48499 * 109.47057 * 179.97438 * 3 2 1
5 5 H 1.48498 * 109.47094 * 300.00631 * 3 2 1
6 6 H 1.48499 * 109.46794 * 60.00688 * 3 2 1
7 7 C 1.37885 * 119.99864 * 180.02562 * 2 1 3
8 8 H 1.08003 * 119.99794 * 185.06731 * 7 2 1
9 9 C 1.50697 * 119.99721 * 5.06585 * 7 2 1
10 10 C 1.52992 * 115.54960 * 279.39749 * 9 7 2
11 11 N 1.46900 * 109.47575 * 320.39567 * 10 9 7
12 12 C 1.46899 * 111.00211 * 184.87708 * 11 10 9
13 13 H 1.08993 * 109.47279 * 30.65733 * 12 11 10
14 14 C 1.53002 * 109.46855 * 270.66249 * 12 11 10
15 15 C 1.50707 * 109.47092 * 303.21041 * 14 12 11
16 16 N 1.34770 * 119.99910 * 185.54884 * 15 14 12
17 17 O 1.21276 * 119.99835 * 5.54989 * 15 14 12
18 18 C 1.52996 * 109.47228 * 150.66337 * 12 11 10
19 19 C 1.53179 * 109.54362 * 299.55170 * 18 12 11
20 20 C 1.53093 * 109.16567 * 183.15265 * 19 18 12
21 21 O 1.42905 * 109.41251 * 57.61103 * 20 19 18
22 22 C 1.42904 * 114.09658 * 298.83824 * 21 20 19
23 23 C 1.53095 * 109.41512 * 61.16206 * 22 21 20
24 24 C 1.52999 * 117.49789 * 65.07468 * 9 7 2
25 25 C 1.53000 * 60.03437 * 107.49718 * 24 9 7
26 26 H 0.96994 * 119.99947 * 359.97438 * 1 2 3
27 27 H 1.09004 * 109.47581 * 80.39543 * 10 9 7
28 28 H 1.09005 * 109.47179 * 200.39474 * 10 9 7
29 29 H 1.00902 * 110.99751 * 308.82821 * 11 10 9
30 30 H 1.08995 * 109.47477 * 63.20772 * 14 12 11
31 31 H 1.08997 * 109.47504 * 183.21625 * 14 12 11
32 32 H 0.97000 * 120.00333 * 359.97438 * 16 15 14
33 33 H 0.97002 * 119.99953 * 179.97438 * 16 15 14
34 34 H 1.08998 * 109.54702 * 59.82330 * 18 12 11
35 35 H 1.08998 * 109.52493 * 303.06273 * 19 18 12
36 36 H 1.08997 * 109.51992 * 63.24585 * 19 18 12
37 37 H 1.08996 * 109.47887 * 297.63085 * 20 19 18
38 38 H 1.08993 * 109.48146 * 177.58831 * 20 19 18
39 39 H 1.08994 * 109.48343 * 301.17783 * 22 21 20
40 40 H 1.09002 * 109.48375 * 181.14374 * 22 21 20
41 41 H 1.08996 * 109.52693 * 182.48292 * 23 22 21
42 42 H 1.09003 * 109.57164 * 62.32438 * 23 22 21
43 43 H 1.09006 * 117.49474 * 214.99372 * 24 9 7
44 44 H 1.08998 * 117.50004 * 359.97438 * 24 9 7
45 45 H 1.08998 * 117.50485 * 107.49310 * 25 24 9
46 46 H 1.09001 * 117.49960 * 252.52272 * 25 24 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2492 1.6177 0.0000
4 1 3.7092 1.3464 0.0006
5 1 1.8904 2.3965 -1.2124
6 1 1.8906 2.3963 1.2126
7 6 2.0046 -1.1941 -0.0005
8 1 3.0814 -1.1960 0.0821
9 6 1.2554 -2.4966 -0.1164
10 6 0.6284 -3.0146 1.1795
11 7 1.5485 -2.7739 2.2991
12 6 1.0307 -3.3619 3.5417
13 1 0.4390 -4.2464 3.3062
14 6 0.1520 -2.3378 4.2630
15 6 0.9482 -1.0840 4.5185
16 7 0.4130 -0.0819 5.2434
17 8 2.0706 -0.9769 4.0717
18 6 2.2005 -3.7565 4.4454
19 6 3.0752 -4.7901 3.7292
20 6 4.1972 -5.2372 4.6699
21 8 3.6287 -5.7691 5.8683
22 6 2.8390 -4.8331 6.6048
23 6 1.6624 -4.3697 5.7419
24 6 0.5040 -2.7656 -1.4217
25 6 1.7894 -3.5337 -1.1076
26 1 -0.4850 0.8400 0.0004
27 1 -0.3110 -2.4929 1.3626
28 1 0.4384 -4.0842 1.0889
29 1 2.4714 -3.1243 2.0904
30 1 -0.7119 -2.0993 3.6427
31 1 -0.1858 -2.7533 5.2123
32 1 -0.4849 -0.1674 5.6004
33 1 0.9256 0.7250 5.4082
34 1 2.7948 -2.8732 4.6792
35 1 2.4679 -5.6515 3.4514
36 1 3.5071 -4.3438 2.8335
37 1 4.8281 -4.3828 4.9150
38 1 4.7975 -6.0043 4.1809
39 1 3.4522 -3.9735 6.8752
40 1 2.4609 -5.3090 7.5096
41 1 1.0839 -3.6228 6.2854
42 1 1.0256 -5.2220 5.5047
43 1 -0.4371 -3.3119 -1.3572
44 1 0.5512 -2.0004 -2.1965
45 1 1.6941 -4.5851 -0.8363
46 1 2.6827 -3.2737 -1.6756
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000602809394.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:31:45
Heat of formation + Delta-G solvation = -61.638584 kcal
Electronic energy + Delta-G solvation = -26000.038073 eV
Core-core repulsion = 22504.160395 eV
Total energy + Delta-G solvation = -3495.877678 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 296.189 amu
Computer time = 0.49 seconds
Orbital eigenvalues (eV)
-39.89414 -38.52769 -36.95030 -35.55388 -33.03466 -32.36992 -31.69005 -31.17861
-29.53408 -26.02751 -25.19795 -23.93857 -23.15596 -21.57012 -20.99059 -20.18207
-19.27961 -18.82919 -16.72391 -16.46941 -16.25668 -15.93296 -15.70808 -14.93646
-14.62836 -14.47894 -14.37016 -14.08366 -13.66803 -13.35219 -13.14131 -13.04540
-12.46975 -12.37737 -12.10254 -11.68382 -11.44827 -11.33522 -11.27985 -11.14547
-10.82965 -10.62395 -10.45325 -10.38567 -10.25976 -10.11788 -10.03173 -9.46965
-9.24127 -9.09849 -8.99776 -8.70433 -8.22021 -7.92658 -7.13901 -5.81103
-3.79662 3.40896 3.43651 3.50532 3.56601 3.90395 4.08529 4.61658
4.74563 4.82181 4.96170 5.06035 5.11920 5.27902 5.41010 5.44116
5.50623 5.53057 5.57059 5.60250 5.71532 5.78916 5.88636 5.93224
5.98610 6.06470 6.16325 6.22218 6.32084 6.37485 6.38954 6.59643
6.68712 6.71450 6.79934 7.08294 7.17823 7.21676 7.29461 7.53293
7.58416 7.87633 8.11105 8.25380 8.48957 8.69116 8.98692 9.15113
9.83187 11.29705
Molecular weight = 296.19amu
Principal moments of inertia in cm(-1)
A = 0.014963 B = 0.005744 C = 0.004878
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1870.824115 B = 4873.522631 C = 5738.747293
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.885 5.885
2 C 0.078 3.922
3 Si 0.887 3.113
4 H -0.275 1.275
5 H -0.291 1.291
6 H -0.288 1.288
7 C -0.456 4.456
8 H 0.055 0.945
9 C 0.050 3.950
10 C 0.109 3.891
11 N -0.634 5.634
12 C 0.109 3.891
13 H 0.037 0.963
14 C -0.130 4.130
15 C 0.521 3.479
16 N -0.874 5.874
17 O -0.495 6.495
18 C -0.098 4.098
19 C -0.152 4.152
20 C 0.063 3.937
21 O -0.388 6.388
22 C 0.063 3.937
23 C -0.150 4.150
24 C -0.162 4.162
25 C -0.219 4.219
26 H 0.252 0.748
27 H 0.066 0.934
28 H -0.012 1.012
29 H 0.336 0.664
30 H 0.091 0.909
31 H 0.078 0.922
32 H 0.391 0.609
33 H 0.393 0.607
34 H 0.099 0.901
35 H 0.065 0.935
36 H 0.080 0.920
37 H 0.051 0.949
38 H 0.090 0.910
39 H 0.048 0.952
40 H 0.088 0.912
41 H 0.071 0.929
42 H 0.068 0.932
43 H 0.059 0.941
44 H 0.079 0.921
45 H 0.060 0.940
46 H 0.075 0.925
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.151 -7.410 13.266 15.196
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.523 5.523
2 C -0.123 4.123
3 Si 0.716 3.284
4 H -0.200 1.200
5 H -0.218 1.218
6 H -0.215 1.215
7 C -0.494 4.494
8 H 0.073 0.927
9 C 0.049 3.951
10 C -0.020 4.020
11 N -0.266 5.266
12 C -0.002 4.002
13 H 0.055 0.945
14 C -0.171 4.171
15 C 0.305 3.695
16 N -0.439 5.439
17 O -0.367 6.367
18 C -0.117 4.117
19 C -0.190 4.190
20 C -0.013 4.013
21 O -0.307 6.307
22 C -0.014 4.014
23 C -0.188 4.188
24 C -0.200 4.200
25 C -0.256 4.256
26 H 0.061 0.939
27 H 0.085 0.915
28 H 0.006 0.994
29 H 0.157 0.843
30 H 0.109 0.891
31 H 0.096 0.904
32 H 0.218 0.782
33 H 0.222 0.778
34 H 0.117 0.883
35 H 0.084 0.916
36 H 0.098 0.902
37 H 0.069 0.931
38 H 0.108 0.892
39 H 0.066 0.934
40 H 0.106 0.894
41 H 0.089 0.911
42 H 0.086 0.914
43 H 0.077 0.923
44 H 0.097 0.903
45 H 0.078 0.922
46 H 0.093 0.907
Dipole moment (debyes) X Y Z Total
from point charges 0.234 -6.981 13.047 14.800
hybrid contribution -0.084 0.734 -0.129 0.750
sum 0.150 -6.247 12.919 14.351
Atomic orbital electron populations
1.70010 1.05741 1.25469 1.51130 1.24761 0.94560 0.98293 0.94698
0.86625 0.80423 0.84575 0.76768 1.20000 1.21777 1.21489 1.20145
0.92166 0.88222 1.48909 0.92714 1.18932 0.96770 0.93397 0.85959
1.21528 0.96165 0.93134 0.91158 1.60283 1.04770 1.61205 1.00316
1.21189 0.93924 0.93035 0.92052 0.94505 1.21770 0.99894 0.94573
1.00898 1.20380 0.87509 0.84702 0.76921 1.43994 1.20332 1.20926
1.58612 1.90738 1.19192 1.80199 1.46576 1.21527 0.97285 0.98734
0.94155 1.22249 0.98080 0.99252 0.99411 1.22561 0.94710 0.98867
0.85190 1.87882 1.67554 1.38520 1.36732 1.22536 0.91911 0.92840
0.94135 1.22287 0.98434 1.00947 0.97150 1.22514 0.92424 1.01579
1.03533 1.23070 0.98120 0.95482 1.08962 0.93871 0.91521 0.99430
0.84268 0.89071 0.90353 0.78202 0.77761 0.88308 0.91616 0.90159
0.93100 0.89158 0.93369 0.89384 0.91088 0.91352 0.92264 0.90272
0.92158 0.90653
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.89 -25.47 13.09 55.43 0.73 -24.74 16
2 C 0.08 2.21 5.42 -17.82 -0.10 2.11 16
3 Si 0.89 22.65 29.54 -169.99 -5.02 17.62 16
4 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16
5 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16
6 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16
7 C -0.46 -12.62 8.14 -34.44 -0.28 -12.90 16
8 H 0.05 1.57 7.82 -52.48 -0.41 1.16 16
9 C 0.05 1.23 1.58 -155.63 -0.25 0.99 16
10 C 0.11 2.43 5.65 -3.83 -0.02 2.41 16
11 N -0.63 -12.89 4.10 -106.73 -0.44 -13.33 16
12 C 0.11 1.76 1.84 -67.71 -0.12 1.64 16
13 H 0.04 0.59 7.66 -51.93 -0.40 0.19 16
14 C -0.13 -1.94 5.36 -27.88 -0.15 -2.09 16
15 C 0.52 8.85 7.58 -10.99 -0.08 8.76 16
16 N -0.87 -11.35 8.87 31.22 0.28 -11.07 16
17 O -0.50 -10.59 13.93 5.56 0.08 -10.51 16
18 C -0.10 -1.40 1.68 -90.44 -0.15 -1.55 16
19 C -0.15 -2.07 5.14 -26.59 -0.14 -2.21 16
20 C 0.06 0.79 6.84 37.21 0.25 1.04 16
21 O -0.39 -5.13 10.77 -35.23 -0.38 -5.51 16
22 C 0.06 0.70 6.84 37.21 0.25 0.96 16
23 C -0.15 -1.73 4.97 -26.59 -0.13 -1.87 16
24 C -0.16 -3.86 9.68 -26.73 -0.26 -4.12 16
25 C -0.22 -4.83 9.89 -26.69 -0.26 -5.09 16
26 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16
27 H 0.07 1.63 7.95 -51.93 -0.41 1.22 16
28 H -0.01 -0.25 7.74 -51.93 -0.40 -0.65 16
29 H 0.34 6.93 6.16 -39.29 -0.24 6.69 16
30 H 0.09 1.46 7.95 -51.93 -0.41 1.05 16
31 H 0.08 0.88 6.34 -51.93 -0.33 0.55 16
32 H 0.39 3.73 8.83 -40.82 -0.36 3.37 16
33 H 0.39 4.93 8.93 -40.82 -0.36 4.57 16
34 H 0.10 1.65 6.01 -51.93 -0.31 1.34 16
35 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16
36 H 0.08 1.18 6.37 -51.93 -0.33 0.85 16
37 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16
38 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16
39 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16
40 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16
41 H 0.07 0.74 6.55 -51.93 -0.34 0.40 16
42 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16
43 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16
44 H 0.08 2.00 8.14 -51.93 -0.42 1.58 16
45 H 0.06 1.20 8.08 -51.93 -0.42 0.78 16
46 H 0.07 1.65 8.14 -51.93 -0.42 1.23 16
LS Contribution 360.19 15.07 5.43 5.43
Total: -1.00 -32.21 360.19 -8.44 -40.65
By element:
Atomic # 1 Polarization: 21.06 SS G_CDS: -7.67 Total: 13.38 kcal
Atomic # 6 Polarization: -10.48 SS G_CDS: -1.44 Total: -11.92 kcal
Atomic # 7 Polarization: -49.71 SS G_CDS: 0.57 Total: -49.15 kcal
Atomic # 8 Polarization: -15.72 SS G_CDS: -0.30 Total: -16.02 kcal
Atomic # 14 Polarization: 22.65 SS G_CDS: -5.02 Total: 17.62 kcal
Total LS contribution 5.43 Total: 5.43 kcal
Total: -32.21 -8.44 -40.65 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000602809394.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -20.988 kcal
(2) G-P(sol) polarization free energy of solvation -32.212 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.199 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.439 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.651 kcal
(6) G-S(sol) free energy of system = (1) + (5) -61.639 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.49 seconds